Vfaba.Tiffany.R1.5g125080.1

Transcript Overview


Name	Vfaba.Tiffany.R1.5g125080.1
Unique Name	Vfaba.Tiffany.R1.5g125080.1_tif_v1
Type	mRNA
Organism	Vicia faba (Faba bean)
Sequence length	501

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:1110908004..1110908681 +	Vicia faba cv. Tiffany genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vicia faba cv. Tiffany genome v1.0	2023-05-02
InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot	2023-05-10
Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11	2023-05-10

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
tifzwsR443	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
astifL146	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
astifL432	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
astifL522	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
catifL222	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
catifL347	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
catifL519	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
crtifL273	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
pvtifL054	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
tiftifL210	Vicia faba cv. Tiffany genome v1.0	Vicia faba
pstifL242	Pisum sativum Cameor genome v1a	Pisum sativum
pstifL254	Pisum sativum Cameor genome v1a	Pisum sativum
pvtifL661	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
tifvuR581	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
tifvfhR349	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvfhR361	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
tifvuR604	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
tifvuR639	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
caitifL266	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
antifL0585	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL0907	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
antifL1236	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
tifvrvR558	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
tifvrvR560	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
tifvrvR602	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
tifvuaR488	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
tifvuaR509	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
tifvuaR537	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
tifvssR641	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
tifvssR664	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
cantifL183	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
cantifL288	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Psat03G0114300-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
jg31586.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Psat3g027040.1	Pisum sativum Cameor genome v1a	Pisum sativum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g125080	Vfaba.Tiffany.R1.5g125080_tif_v1	Vicia faba	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g125080.1_tif_v1-exon	Vfaba.Tiffany.R1.5g125080.1_tif_v1-exon-chr5_tif_v1:1110908004..1110908289	Vicia faba	exon
Vfaba.Tiffany.R1.5g125080.1_tif_v1-exon	Vfaba.Tiffany.R1.5g125080.1_tif_v1-exon-chr5_tif_v1:1110908385..1110908491	Vicia faba	exon
Vfaba.Tiffany.R1.5g125080.1_tif_v1-exon	Vfaba.Tiffany.R1.5g125080.1_tif_v1-exon-chr5_tif_v1:1110908574..1110908681	Vicia faba	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g125080.1_tif_v1-cds	Vfaba.Tiffany.R1.5g125080.1_tif_v1-cds-chr5_tif_v1:1110908004..1110908289	Vicia faba	CDS
Vfaba.Tiffany.R1.5g125080.1_tif_v1-cds	Vfaba.Tiffany.R1.5g125080.1_tif_v1-cds-chr5_tif_v1:1110908385..1110908491	Vicia faba	CDS
Vfaba.Tiffany.R1.5g125080.1_tif_v1-cds	Vfaba.Tiffany.R1.5g125080.1_tif_v1-cds-chr5_tif_v1:1110908574..1110908681	Vicia faba	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vfaba.Tiffany.R1.5g125080.1_tif_v1	Vfaba.Tiffany.R1.5g125080.1_tif_v1	Vicia faba	polypeptide
Vfaba.Tiffany.R1.5g125080.1_tif_v1	Vfaba.Tiffany.R1.5g125080.1_tif_v1-protein	Vicia faba	polypeptide

Homology

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BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YBU2|A0A1S2YBU2_CICAR (RNA-binding protein Musashi homolog 2 OS=Cicer arietinum OX=3827 GN=LOC101502883 PE=4 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 4.076e-69
Identity = 126/175 (72.00%), Postives = 139/175 (79.43%), Query Frame = 0

Query:    4 SWMRGARLISL--------SSRCRNHTINYSPSFHATTIFTN---QPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNI--GNLNR 165
             WMRGARLISL         SR R   I  SP+F A+TIFT    Q  PSH QCRF++SS S + SPS S   SNKLFVGGLSWSVDEKSLKDAFSSFG+VTEVRIVYDKD+GR+RGFGFVIFSNE+ AKSAKD+MDGKALLGRPLRINFAL+K RG PVVVPRFS+I  G+LNR
Sbjct:    8 EWMRGARLISLFSGRCRIEKSRLRTLMIVKSPTFFASTIFTKLQLQHPPSHFQCRFYSSSPSPSPSPSPS---SNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDTGRSRGFGFVIFSNEEHAKSAKDSMDGKALLGRPLRINFALDKVRGGPVVVPRFSDIGVGHLNR 179

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NMH9|A0A2K3NMH9_TRIPR (Glycine-rich RNA-binding protein mitochondrial-like OS=Trifolium pratense OX=57577 GN=L195_g000664 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.093e-67
Identity = 113/160 (70.62%), Postives = 120/160 (75.00%), Query Frame = 0

Query:    6 MRGARLISLSSRCRNHTINYSPSFHATTIFTNQPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNR 165
            MRG  LISL S  R+  +                   HSQCRFFNSS+S         PSSNKLF+GGLSWSVDEKSLKDAFSSFG+VTEVRIVYDKDSGRARGFGFVIF+NEDDAKSAKDAMDGKALLGRPLRINFALEK RG PVVVPRFS+ G  NR
Sbjct:    1 MRGTSLISLFSLSRHRIL-------------------HSQCRFFNSSASE--------PSSNKLFIGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFTNEDDAKSAKDAMDGKALLGRPLRINFALEKARGGPVVVPRFSDNGRFNR 133

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R4L5|A0A0S3R4L5_PHAAN (RRM domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G338600 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.073e-62
Identity = 108/143 (75.52%), Postives = 115/143 (80.42%), Query Frame = 0

Query:   26 SPSFHATTIFTN--QPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNRR 166
            S +F AT I T    P P   Q RF+ SS S         PSSNKLFVGGLSWSVDEKSLKDAFSSFG+VTEVRIVYDKDSGR+RGFGFVIFSNEDDAK AK+AMDGKALLGRPLRIN ALEK RGVPVVVPR S+IG+LNRR
Sbjct:    4 SLAFVATAISTRFRVPLP-QIQYRFYCSSPSH--------PSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKEAMDGKALLGRPLRINIALEKARGVPVVVPRLSDIGHLNRR 137

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9T5H6|A0A0L9T5H6_PHAAN (RRM domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan123s000600 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.073e-62
Identity = 108/143 (75.52%), Postives = 115/143 (80.42%), Query Frame = 0

Query:   26 SPSFHATTIFTN--QPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNRR 166
            S +F AT I T    P P   Q RF+ SS S         PSSNKLFVGGLSWSVDEKSLKDAFSSFG+VTEVRIVYDKDSGR+RGFGFVIFSNEDDAK AK+AMDGKALLGRPLRIN ALEK RGVPVVVPR S+IG+LNRR
Sbjct:    4 SLAFVATAISTRFRVPLP-QIQYRFYCSSPSH--------PSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKEAMDGKALLGRPLRINIALEKARGVPVVVPRLSDIGHLNRR 137

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445JZX2|A0A445JZX2_GLYSO (Glycine-rich RNA-binding protein 4, mitochondrial isoform B OS=Glycine soja OX=3848 GN=D0Y65_018579 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-61
Identity = 103/139 (74.10%), Postives = 114/139 (82.01%), Query Frame = 0

Query:   28 SFHATTIFTN-QPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNR 165
            +F ATTI+      P  +QCRF+       S PS +  SSNKLFVGGLSWSVD KSLK+AFSSFG+VTEV IVYDKDSGR+RGFGFVIFSNEDDAK AKDAMDGKALLGRPLRINFALEK RGVPVVVPR S+IG++NR
Sbjct:    6 AFLATTIWKRFHVSPPQTQCRFY------CSPPSHA--SSNKLFVGGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGHVNR 136

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|K7L326|K7L326_SOYBN (RRM domain-containing protein OS=Glycine max OX=3847 GN=100810104 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.196e-61
Identity = 103/139 (74.10%), Postives = 114/139 (82.01%), Query Frame = 0

Query:   28 SFHATTIFTN-QPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNR 165
            +F ATTI+      P  +QCRF+       S PS +  SSNKLFVGGLSWSVD KSLK+AFSSFG+VTEV IVYDKDSGR+RGFGFVIFSNEDDAK AKDAMDGKALLGRPLRINFALEK RGVPVVVPR S+IG++NR
Sbjct:    6 AFLATTIWKRFHVSPPQTQCRFY------CSPPSHA--SSNKLFVGGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGHVNR 136

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UNP7|A0A1S3UNP7_VIGRR (glycine-rich RNA-binding protein 4, mitochondrial OS=Vigna radiata var. radiata OX=3916 GN=LOC106767233 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.235e-61
Identity = 106/141 (75.18%), Postives = 114/141 (80.85%), Query Frame = 0

Query:   28 SFHATTIFTN--QPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNRR 166
            +F AT I T    P P   Q RF+ SS S         PSSNKLFVGGLSWSVDEKSLKDAFSSFG+VTEVRIVYDKDSGR+RGFGFVIFSNEDDAK AK+AMDGKALLGRPLRI+ ALEK RGVPVVVPR S+IG+LNRR
Sbjct:    7 AFVATAISTRFRVPLP-QIQYRFYCSSPSH--------PSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKEAMDGKALLGRPLRISIALEKARGVPVVVPRLSDIGHLNRR 138

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7GLW0|A0A1J7GLW0_LUPAN (RRM domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25710 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.515e-61
Identity = 104/140 (74.29%), Postives = 113/140 (80.71%), Query Frame = 0

Query:   26 SPSFHATTIFTNQPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNR 165
            S +F A TI T + H    Q RF  S+SS        PPS+NKLFVGGLSWSVDEKSL DAFSSFG+VTEVRIVYDKDSGR+RGFGFVIFSNED+AK AKDAMDGKALLGRPLRINFALEK RG PVVVPR S+IG+L R
Sbjct:    9 SMAFVAKTIST-KLHVPLLQYRFLCSNSS--------PPSTNKLFVGGLSWSVDEKSLVDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDNAKCAKDAMDGKALLGRPLRINFALEKARGSPVVVPRLSDIGHLKR 139

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|G7J6Q3|G7J6Q3_MEDTR (Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Medicago truncatula OX=3880 GN=11438930 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.249e-60
Identity = 113/160 (70.62%), Postives = 122/160 (76.25%), Query Frame = 0

Query:    6 MRGARLISLSSRCRNHTINYSPSFHATTIFTNQPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNR 165
            M+G RLISL S+      +  PS             SH Q RFFNSSSSS SS        NKLFVGGLSWSVDEKSLKDAFSSFG+VTEVRIVYDKDSGRARGFGFVIFSNED AKSAKDAMDGKALLGRPLRINFALEK RG+PVVVPRF++ G+ N+
Sbjct:    1 MKGTRLISLFSKQ-----HLRPS-------------SHPQFRFFNSSSSSASS--------NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAMDGKALLGRPLRINFALEKPRGIPVVVPRFTDNGHFNK 134

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4NYR1|A0A6A4NYR1_LUPAL (Putative RNA recognition motif domain-containing protein OS=Lupinus albus OX=3870 GN=Lalb_Chr19g0129931 PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.486e-57
Identity = 101/140 (72.14%), Postives = 113/140 (80.71%), Query Frame = 0

Query:   26 SPSFHATTIFTNQPHPSHSQCRFFNSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSNIGNLNR 165
            S +F A +I T + H    QCRF +S SS +S+        NKLFVGGLSWSVDEKSL DAFSSFG+VTEVRIVYDKDSGR+RGFGFVIFSNED+AK AKDAMDGKALLGRPLRINFALEK RG PVVVPR S++G+L R
Sbjct:    5 SMAFVAKSIST-KLHVPLLQCRFLSSHSSPSST--------NKLFVGGLSWSVDEKSLIDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDNAKCAKDAMDGKALLGRPLRINFALEKARGSPVVVPRLSDLGHLKR 135

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LIS2|RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.455e-29
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 0

Query:   66 SNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKT 147
            S+KLFVGGLSW  D+ SLK AF+SFGEVTE  ++ D+++GR+RGFGFV FS ED A +A   MDGK L GR +R+N A E++
Sbjct:   34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 115

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FNR1|RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.216e-23
Identity = 40/83 (48.19%), Postives = 68/83 (81.93%), Query Frame = 0

Query:   65 SSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKT 147
            SS+KLF+GG+++S+DE SL++AF+ +GEV + R++ D+++GR+RGFGFV F++ + A SA  A+DG+ L GR +++N+A ++T
Sbjct:   38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SVM8|RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.996e-23
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 0

Query:   50 NSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRIN 141
            N +   TS   S    S KLF+GGLSW  D+ SL+DAF+ FG+V + +++ D+++GR+RGFGFV F++E  A +A   MDGK L GR +R+N
Sbjct:   18 NGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|P98179|RBM3_HUMAN (RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=RBM3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.312e-21
Identity = 40/83 (48.19%), Postives = 63/83 (75.90%), Query Frame = 0

Query:   68 KLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGV 150
            KLFVGGL+++ DE++L+D FSSFG ++EV +V D+++ R+RGFGF+ F+N + A  A  AM+G++L GR +R++ A +  RG 
Sbjct:    7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSARGT 89

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|W8E7I1|RBM3_CAPHI (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.772e-21
Identity = 40/82 (48.78%), Postives = 64/82 (78.05%), Query Frame = 0

Query:   68 KLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRG 149
            KLFVGGL+++ DE++L+D FSSFG ++EV +V D+++ R+RGFGF+ F+N + A +A  AM+G++L GR +R++ A +  RG
Sbjct:    7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q5RF83|CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii OX=9601 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.328e-21
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = 0

Query:   68 KLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFA 143
            KLFVGGLS+  +E+SL+  FS +G+++EV +V D+++ R+RGFGFV F N DDAK A  AM+GK++ GR +R++ A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q14011|CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.328e-21
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = 0

Query:   68 KLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFA 143
            KLFVGGLS+  +E+SL+  FS +G+++EV +V D+++ R+RGFGFV F N DDAK A  AM+GK++ GR +R++ A
Sbjct:    7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|P49311|GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.093e-21
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 0

Query:   61 SSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFA 143
            +SP    + FVGGL+W+ DE+SL+ AFS FGE+ + +I+ D+++GR+RGFGFV F +E   K A + M+G+ L GR + +N A
Sbjct:    2 ASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEA 84

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9DED4|CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.506e-21
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 0

Query:   68 KLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFA 143
            KLF+GGL++  +E+SL+  FS +G+++EV +V D+++ R+RGFGFV F N DDAK A  AM+GKA+ GR +R++ A
Sbjct:    6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q925G0|RBM3_RAT (RNA-binding protein 3 OS=Rattus norvegicus OX=10116 GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.777e-21
Identity = 39/83 (46.99%), Postives = 62/83 (74.70%), Query Frame = 0

Query:   68 KLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGV 150
            KLFVGGL+++ DE++L+D FSSFG ++EV +V D+++ R+RGFGF+ F+N + A     AM+G++L GR +R++ A +  RG 
Sbjct:    7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSARGT 89

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT3G08000.1 (| RNA-binding (RRM/RBD/RNP motifs) family protein | Chr3:2555034-2555829 REVERSE LENGTH=143 | 201606)

HSP 1 Score: 151.369 bits (381), Expect = 2.453e-47
Identity = 73/92 (79.35%), Postives = 79/92 (85.87%), Query Frame = 0

Query:   68 KLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGVPVVVPRFSN 159
            KLF+GGLSWSVDE+SLKDAFSSFGEV EVRI YDK SGR+RGFGFV F+ E DA SAKDAMDGK LLGRPLRI+FALE+ RG PVVVPR   
Sbjct:   42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGK 133

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT3G23830.2 (| glycine-rich RNA-binding protein 4 | Chr3:8606762-8607677 REVERSE LENGTH=136 | 201606)

HSP 1 Score: 106.686 bits (265), Expect = 5.581e-30
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 0

Query:   66 SNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKT 147
            S+KLFVGGLSW  D+ SLK AF+SFGEVTE  ++ D+++GR+RGFGFV FS ED A +A   MDGK L GR +R+N A E++
Sbjct:   34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 115

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT3G23830.1 (| glycine-rich RNA-binding protein 4 | Chr3:8606762-8607677 REVERSE LENGTH=136 | 201606)

HSP 1 Score: 106.686 bits (265), Expect = 5.581e-30
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 0

Query:   66 SNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKT 147
            S+KLFVGGLSW  D+ SLK AF+SFGEVTE  ++ D+++GR+RGFGFV FS ED A +A   MDGK L GR +R+N A E++
Sbjct:   34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 115

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT4G13850.4 (| glycine-rich RNA-binding protein 2 | Chr4:8021314-8022065 FORWARD LENGTH=129 | 201606)

HSP 1 Score: 92.4337 bits (228), Expect = 1.658e-24
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 0

Query:   50 NSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRIN 141
            N +   TS   S    S KLF+GGLSW  D+ SL+DAF+ FG+V + +++ D+++GR+RGFGFV F++E  A +A   MDGK L GR +R+N
Sbjct:   18 NGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT5G61030.2 (| glycine-rich RNA-binding protein 3 | Chr5:24560870-24562152 FORWARD LENGTH=309 | 201606)

HSP 1 Score: 96.6709 bits (239), Expect = 2.267e-24
Identity = 40/83 (48.19%), Postives = 68/83 (81.93%), Query Frame = 0

Query:   65 SSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKT 147
            SS+KLF+GG+++S+DE SL++AF+ +GEV + R++ D+++GR+RGFGFV F++ + A SA  A+DG+ L GR +++N+A ++T
Sbjct:   38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT5G61030.1 (| glycine-rich RNA-binding protein 3 | Chr5:24560870-24562152 FORWARD LENGTH=309 | 201606)

HSP 1 Score: 96.6709 bits (239), Expect = 2.267e-24
Identity = 40/83 (48.19%), Postives = 68/83 (81.93%), Query Frame = 0

Query:   65 SSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKT 147
            SS+KLF+GG+++S+DE SL++AF+ +GEV + R++ D+++GR+RGFGFV F++ + A SA  A+DG+ L GR +++N+A ++T
Sbjct:   38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT4G13850.3 (| glycine-rich RNA-binding protein 2 | Chr4:8021314-8022065 FORWARD LENGTH=144 | 201606)

HSP 1 Score: 92.4337 bits (228), Expect = 2.846e-24
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 0

Query:   50 NSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRIN 141
            N +   TS   S    S KLF+GGLSW  D+ SL+DAF+ FG+V + +++ D+++GR+RGFGFV F++E  A +A   MDGK L GR +R+N
Sbjct:   18 NGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT4G13850.2 (| glycine-rich RNA-binding protein 2 | Chr4:8021314-8022065 FORWARD LENGTH=153 | 201606)

HSP 1 Score: 92.4337 bits (228), Expect = 3.597e-24
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 0

Query:   50 NSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRIN 141
            N +   TS   S    S KLF+GGLSW  D+ SL+DAF+ FG+V + +++ D+++GR+RGFGFV F++E  A +A   MDGK L GR +R+N
Sbjct:   18 NGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT4G13850.1 (| glycine-rich RNA-binding protein 2 | Chr4:8021314-8022065 FORWARD LENGTH=158 | 201606)

HSP 1 Score: 92.4337 bits (228), Expect = 4.089e-24
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 0

Query:   50 NSSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRIN 141
            N +   TS   S    S KLF+GGLSW  D+ SL+DAF+ FG+V + +++ D+++GR+RGFGFV F++E  A +A   MDGK L GR +R+N
Sbjct:   18 NGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109

[Close]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Match: AT1G74230.1 (| glycine-rich RNA-binding protein 5 | Chr1:27915346-27916857 FORWARD LENGTH=289 | 201606)

HSP 1 Score: 88.9669 bits (219), Expect = 1.382e-21
Identity = 45/104 (43.27%), Postives = 73/104 (70.19%), Query Frame = 0

Query:   47 RFFNSSSSSTSSPSSSPPS-----SNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALE 145
            R F+ +SS  ++ SS   S     S+K+FVGG+S+S DE  L++AFS +GEV + +I+ D+++GR+RGF FV F++ ++A +A   +DG+ L GR +R+N+A E
Sbjct:    9 RLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYATE 111

The following BLAST results are available for this feature:

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A1S2YBU2\|A0A1S2YBU2_CICAR	4.076e-69	72.00	RNA-binding protein Musashi homolog 2 OS=Cicer ari...	[more]
tr\|A0A2K3NMH9\|A0A2K3NMH9_TRIPR	4.093e-67	70.63	Glycine-rich RNA-binding protein mitochondrial-lik...	[more]
tr\|A0A0S3R4L5\|A0A0S3R4L5_PHAAN	2.073e-62	75.52	RRM domain-containing protein OS=Vigna angularis v...	[more]
tr\|A0A0L9T5H6\|A0A0L9T5H6_PHAAN	2.073e-62	75.52	RRM domain-containing protein OS=Phaseolus angular...	[more]
tr\|A0A445JZX2\|A0A445JZX2_GLYSO	1.196e-61	74.10	Glycine-rich RNA-binding protein 4, mitochondrial ...	[more]
tr\|K7L326\|K7L326_SOYBN	1.196e-61	74.10	RRM domain-containing protein OS=Glycine max OX=38...	[more]
tr\|A0A1S3UNP7\|A0A1S3UNP7_VIGRR	1.235e-61	75.18	glycine-rich RNA-binding protein 4, mitochondrial ...	[more]
tr\|A0A1J7GLW0\|A0A1J7GLW0_LUPAN	7.515e-61	74.29	RRM domain-containing protein OS=Lupinus angustifo...	[more]
tr\|G7J6Q3\|G7J6Q3_MEDTR	4.249e-60	70.63	Putative nucleotide-binding alpha-beta plait domai...	[more]
tr\|A0A6A4NYR1\|A0A6A4NYR1_LUPAL	3.486e-57	72.14	Putative RNA recognition motif domain-containing p...	[more]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
sp\|Q9LIS2\|RBG4_ARATH	5.455e-29	59.76	Glycine-rich RNA-binding protein 4, mitochondrial ...	[more]
sp\|Q9FNR1\|RBG3_ARATH	2.216e-23	48.19	Glycine-rich RNA-binding protein 3, mitochondrial ...	[more]
sp\|Q9SVM8\|RBG2_ARATH	3.996e-23	47.83	Glycine-rich RNA-binding protein 2, mitochondrial ...	[more]
sp\|P98179\|RBM3_HUMAN	2.312e-21	48.19	RNA-binding protein 3 OS=Homo sapiens OX=9606 GN=R...	[more]
sp\|W8E7I1\|RBM3_CAPHI	2.772e-21	48.78	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=R...	[more]
sp\|Q5RF83\|CIRBP_PONAB	3.328e-21	52.63	Cold-inducible RNA-binding protein OS=Pongo abelii...	[more]
sp\|Q14011\|CIRBP_HUMAN	3.328e-21	52.63	Cold-inducible RNA-binding protein OS=Homo sapiens...	[more]
sp\|P49311\|GRP2_SINAL	4.093e-21	46.99	Glycine-rich RNA-binding protein GRP2A OS=Sinapis ...	[more]
sp\|Q9DED4\|CIRBB_XENLA	6.506e-21	51.32	Cold-inducible RNA-binding protein B OS=Xenopus la...	[more]
sp\|Q925G0\|RBM3_RAT	9.777e-21	46.99	RNA-binding protein 3 OS=Rattus norvegicus OX=1011...	[more]

BLAST of Vfaba.Tiffany.R1.5g125080.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 10


Match Name	E-value	Identity	Description
AT3G08000.1	2.453e-47	79.35	\| RNA-binding (RRM/RBD/RNP motifs) family protein ...	[more]
AT3G23830.2	5.581e-30	59.76	\| glycine-rich RNA-binding protein 4 \| Chr3:860676...	[more]
AT3G23830.1	5.581e-30	59.76	\| glycine-rich RNA-binding protein 4 \| Chr3:860676...	[more]
AT4G13850.4	1.658e-24	47.83	\| glycine-rich RNA-binding protein 2 \| Chr4:802131...	[more]
AT5G61030.2	2.267e-24	48.19	\| glycine-rich RNA-binding protein 3 \| Chr5:245608...	[more]
AT5G61030.1	2.267e-24	48.19	\| glycine-rich RNA-binding protein 3 \| Chr5:245608...	[more]
AT4G13850.3	2.846e-24	47.83	\| glycine-rich RNA-binding protein 2 \| Chr4:802131...	[more]
AT4G13850.2	3.597e-24	47.83	\| glycine-rich RNA-binding protein 2 \| Chr4:802131...	[more]
AT4G13850.1	4.089e-24	47.83	\| glycine-rich RNA-binding protein 2 \| Chr4:802131...	[more]
AT1G74230.1	1.382e-21	43.27	\| glycine-rich RNA-binding protein 5 \| Chr1:279153...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 69..139 e-value: 3.4E-22 score: 78.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 67..145 score: 21.633808
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 36..149 e-value: 3.7E-33 score: 116.7
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 23..148
None	No IPR available	CDD	cd21608	RRM2_NsCP33_like	coord: 68..143 e-value: 2.73423E-34 score: 113.803
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 55..151

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1110908004..1110908681+

mRNA sequence

>Vfaba.Tiffany.R1.5g125080.1_tif_v1 ID=Vfaba.Tiffany.R1.5g125080.1_tif_v1; Name=Vfaba.Tiffany.R1.5g125080.1; organism=Vicia faba; type=mRNA; length=501bp
ATGGTAAGAAGCTGGATGAGAGGGGCGAGGTTGATATCATTGTCCTCGCG
CTGCCGAAACCATACGATCAACTATTCTCCCTCGTTTCATGCTACAACCA
TTTTCACAAACCAGCCGCATCCTTCTCACTCTCAATGCCGATTCTTCAAC
TCTTCTTCTTCTTCAACTTCTTCACCATCATCATCACCACCTTCCTCTAA
CAAGCTCTTCGTAGGAGGTCTATCATGGTCCGTAGATGAAAAATCCCTCA
AAGACGCTTTCTCTTCTTTCGGCGAAGTCACCGAAGTGAGGATAGTTTAT
GATAAAGACAGTGGTAGAGCTAGAGGCTTTGGGTTTGTTATCTTTTCAAA
CGAAGATGATGCAAAGTCCGCTAAAGATGCAATGGACGGAAAGGCATTGT
TAGGTAGACCATTGAGGATAAATTTTGCTCTCGAAAAAACTCGTGGGGTA
CCTGTTGTAGTTCCTCGGTTTTCAAATATTGGAAACTTAAACAGGCGCTG
A

protein sequence of Vfaba.Tiffany.R1.5g125080.1_tif_v1

>Vfaba.Tiffany.R1.5g125080.1_tif_v1 ID=Vfaba.Tiffany.R1.5g125080.1_tif_v1; Name=Vfaba.Tiffany.R1.5g125080.1_tif_v1; organism=Vicia faba; type=polypeptide; length=166bp
MVRSWMRGARLISLSSRCRNHTINYSPSFHATTIFTNQPHPSHSQCRFFN
SSSSSTSSPSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVY
DKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKTRGV
PVVVPRFSNIGNLNRR

mRNA from alignment at chr5:1110908004..1110908681+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vfaba.Tiffany.R1.5g125080.1_tif_v1 ID=Vfaba.Tiffany.R1.5g125080.1_tif_v1; Name=Vfaba.Tiffany.R1.5g125080.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1110908004..1110908681+ (Vicia faba

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Search form

Vfaba.Tiffany.R1.5g125080.1