Psat3g025560.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 1.601e-29 Identity = 62/127 (48.82%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 40 FIWKIESFSEQNTKNLRSKSFRIGGYKWRILLHPLRKNVEHFSLYLMVAD--SLPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGYRSWG-SLFLNLSDFHDSKQGYLVNNTCIIEAHINVQ 411
F W I +FS QNT+ S F +GGYKWRIL+ P NV+H S+YL V+D SLP YGWSR A F L +VNQ +V KET +FN WG + F+ LS+ +D +GYLVN+T ++EA + V+
Sbjct: 57 FTWTIPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDAASLP-YGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVR 182
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 5.908e-28 Identity = 59/127 (46.46%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 40 FIWKIESFSEQNTKNLRSKSFRIGGYKWRILLHPLRKNVEHFSLYLMVADS--LPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGYRSWG-SLFLNLSDFHDSKQGYLVNNTCIIEAHINVQ 411
F W I F+ NT+ S F +GGYKWRIL+ P NV+H S+YL VAD+ LP YGWSR + F L +VNQ ++ S+ KET +FN WG + F+ LS+ ++ +GYLVN+T +IEA + V+
Sbjct: 56 FTWTIPMFTRLNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADAANLP-YGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVR 181
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: MCC16_ARATH (MATH domain and coiled-coil domain-containing protein At3g58210 OS=Arabidopsis thaliana OX=3702 GN=At3g58210 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.786e-19 Identity = 77/267 (28.84%), Postives = 117/267 (43.82%), Query Frame = 1
Query: 40 FIWKIESFSEQNTKNLRSKSFRIGGYKWRILLHP--LRKNVEHFSLYLMVAD--SLPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGYRSWG-SLFLNLSDFHDSKQGYLVNNTCIIEAHINVQASSHRESSKQEDVNEASDESSTIGS-----------FDSNXXXXXXXXXXXXXXXXXXXXXXAVYVPLLEEACVWHPSLIRSQSKRTQRFKSWAFSSLGQVLHILKTSKVKDMNEEVSNNLRGLWEELVMASGFNLDW 792
F W I++FS ++ + S F IGG KWR+L++P K+ +H SL+L VAD SLP GWSR A + L +VNQ D S E + FN WG S + L+ H G+LVN+ I A +NV E + DV E S+E + + +SN+ ++ L + V ++ HP + + + + + L ++ L K NE++ L V SGF +DW
Sbjct: 9 FTWVIQNFSSSQSRVVPSNQFVIGGCKWRLLVYPEGFNKSGDHLSLFLEVADPRSLPP-GWSRHARYLLTIVNQHSDKISKRNEATKWFNQKIPGWGLSAMIPLTKLHAKDGGFLVNDELKIVAEVNV-----LEVIGKLDVPEESEEETQVTQPMKKVKVDYDHVESNDLMINETPPVSELMDVNGFQVLPSQVDFVKRIFEKHPDIAKDFRPKNPHLRKACMNFLLSLMETLCQPPQKLSNEDLVEADNAL--TYVKVSGFKVDW 267
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: MCC29_ARATH (MATH domain and coiled-coil domain-containing protein At3g58410 OS=Arabidopsis thaliana OX=3702 GN=At3g58410 PE=4 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 4.436e-18 Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 40 FIWKIESFSEQNTKNLRSKSFRIGGYKWRILLHPLRKNVEHFSLYLMVAD--SLPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGYRSWGSLF-LNLSDFHDSKQGYLVNNTCIIEAHINV 408
F W I++FS K S F+IG KWR+ ++P N ++ SL+L VAD SLP+ GW R +L +V Q +++++TH+ F+ WG L+ L L+ HD K+G+LVN +I A ++
Sbjct: 9 FAWVIKNFSSLQCKKFYSVPFQIGDCKWRLSIYPKGNNCDYLSLFLEVADFKSLPS-GWRRYVKLRLYIVKQL---STLIRKTHRWFDQEMWGWGFLYMLPLTKLHDEKEGFLVNGELMIVAEVDA 130
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: MCC21_ARATH (MATH domain and coiled-coil domain-containing protein At3g58270 OS=Arabidopsis thaliana OX=3702 GN=At3g58270 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 7.803e-18 Identity = 80/281 (28.47%), Postives = 132/281 (46.98%), Query Frame = 1
Query: 40 FIWKIESFSEQNTKNLRSKSFRIGGYKWRILLHPLRKNVEHFSLYLMVADS--LPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGYRSWG-SLFLNLSDFHDSKQGYLVN-------NTCIIE--AHINVQASSHRESSK------QEDVNEASDESS-TIGSFDSNXXXXXXXXXXXXXXXXXXXXXXAVYV-PLLEE--ACVW--HPSLIRSQSKRTQRFKSWAFSSLGQVLHILKTSKVKDMNEEVSNNLRGLWEELVMASGFNLDWLKPYVE 810
F W I++FS Q ++ S F + G KWR+L P VE SLYL VA S LP GW R A+F +VNQ D S +ET F+ WG + L+L HD G+LVN + ++E ++V S ++K + DV E S+E++ + D N+ S+ +L++ ++ D V P E +C++ HP + + Q +S + L ++ + S + +++S+ L + +G NL+WL+ +E
Sbjct: 9 FTWVIKNFSSQQSRKNYSDEFFVDGCKWRLLAFPKGNGVEKLSLYLAVAGSEFLPD-GWRRHAYFHFSVVNQLSDELSQARETKNWFDASTSDWGFTSMLSLKKLHDKDGGFLVNGELKIVVDVSVLEVIGKLDVPVESEETTTKALSELEENDVPEESEETTKALSKVDENDGAESNDSLKEASSVKESMDVNGFRVLPSQVETVSCIFERHPDIASEFGPKNQHLRSAYMNVLLSLIKTMCQSTQELSKDDLSDADAAL--AYLTDAGLNLNWLEEKLE 286
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: MCC20_ARATH (MATH domain and coiled-coil domain-containing protein At3g58260 OS=Arabidopsis thaliana OX=3702 GN=At3g58260 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.250e-16 Identity = 48/130 (36.92%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 40 FIWKIESFSEQNTKNLRSKSFRIGGYKWRILLHPLRKNVEHF---SLYLMVAD---SLPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGYRSWG-SLFLNLSDFHDSKQGYLVNNTCIIEAHINV 408
F W I++ S +RSK F +GG KWR++ +P + + + S+YL V D SLP+ GW R A F L +VNQ + S V+ET F+ WG LNL D D G+LVN+ ++ ++V
Sbjct: 9 FTWVIKNLSTLQGLEVRSKIFVVGGCKWRLIAYPEVNDADGYLSLSVYLGVPDCCESLPS-GWKRHAKFSLTIVNQLSEGLSQVQETQAWFDENAPGWGFPPMLNLKDVSDKYGGFLVNDEVMVAVAVDV 137
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: MCC23_ARATH (MATH domain and coiled-coil domain-containing protein At3g58340 OS=Arabidopsis thaliana OX=3702 GN=At3g58340 PE=4 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 2.796e-14 Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 1
Query: 40 FIWKIESFSEQNTKNLRSKSFRIGGYKWRILLHPLRKNVEHFSLYLMVAD--SLPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGYRSWG-SLFLNLSDFHDSKQGYLVNNTCIIEAHI 402
F W+I++FS N++ S IG KWR++ P ++ SLYL VAD SLP+ GW R F+ +VNQ SV +ET + F+ WG L L++ + G+LVN +I A +
Sbjct: 9 FCWEIKNFSSLNSERCHSVPVVIGDCKWRLVAFPKGYKADYLSLYLEVADFKSLPS-GWRRYVKFRACIVNQLSQELSVQQETQRWFDQNAPGWGFENMLLLTELNAKDGGFLVNGQVMIVAEV 131
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: MCC03_ARATH (MATH domain and coiled-coil domain-containing protein At2g01790 OS=Arabidopsis thaliana OX=3702 GN=At2g01790 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.826e-13 Identity = 92/306 (30.07%), Postives = 134/306 (43.79%), Query Frame = 1
Query: 43 IWKIESFSEQNTKNLRSKSFRIGGYKWRILLHPLRKN---VEHFSLYLMVADS--LPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGY--------RSWGSLFLNLSDFHDSKQGYLVNNTCIIEAHINVQASSHRESSKQEDVNEASDESSTIGSFDSNXXXXXXXXXXXXXXXXXXXXXXAVYVPLLEEACVWHPSLIRSQSKRTQRFKSWAFSSLGQVLHILKTSKVKDMNEEVSN-NLRGLWEEL--VMASGFNLDWL-KPYVESALSMEKHLERVLKVNELKGSIVDLETKMKKLR 909
+W I +FS ++ + S F +GG KW +L P N ++FSLYL V DS LP+ GW R+A +VNQ V E Q+ G Y + +GS+F L F S +G+LVN I A ++V E + DV+E S+ S DSN D A V + +P +T R K SL ++L K++K E+SN +L + L V +GF LDWL K E+ S + +E LK +LK D++ ++ LR
Sbjct: 10 LWVINNFSFLDSDRVYSDIFVVGGCKWCLLALPEGNNNYIYDYFSLYLCVPDSEYLPS-GWRRRAKVSFTMVNQ------VTGELSQQQEGVYWFDEKNTTQGFGSMF-RLLVFQSSYKGFLVNGEVDIVAEVDV-----VEVIGKLDVSEESE------SIDSN-----------------GFDVLASQVESVNSLFGKYPCFASKLCPKTPRLKKNVVQSLNEIL--CKSTK------ELSNGDLAEAYSALRFVTKAGFKLDWLEKKLKETGKSRLQEIEEDLK--DLKVKCADMDALLEFLR 269
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: MCC25_ARATH (MATH domain and coiled-coil domain-containing protein At3g58360 OS=Arabidopsis thaliana OX=3702 GN=At3g58360 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.447e-13 Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 1
Query: 46 WKIESFSEQNTKNLRSKSFRIGGYKWRILLHPLRKNVEHFSLYLMVAD--SLPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGYRSWGSL-FLNLSDFHDSKQGYLVNNTCIIEAHINV 408
W IE+FS ++K + S F +GG KWR L++P NV++ LYL VAD SL + W R A + L +VNQ +S E + F+ WG L L++ + G+LVN I A I V
Sbjct: 11 WAIENFSSLHSKKIYSDPFIVGGCKWRFLVYPKGNNVDYLFLYLEVADYESL-SPEWRRHARYLLNVVNQNSVKRSKQNEEQKWFDVQSPRWGRLSMFPLNEINAKDSGFLVNGELKIVAEIEV 133
BLAST of Psat3g025560.1 vs. DB:Swiss
Match: MCC13_ARATH (MATH domain and coiled-coil domain-containing protein At3g44790 OS=Arabidopsis thaliana OX=3702 GN=At3g44790 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.717e-13 Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = 1
Query: 25 INFEPFIWKIESFSEQNTKNLRSKSFRIGGYKWRILLHPLRKNVEHFSLYLMVADS--LPAYGWSRKAHFKLVLVNQTDDNKSVVKETHQKFNGGYRSWGSL-FLNLSDFHDSKQGYLVNNTCIIEAHINV 408
+ +E F W I++FS +K + S F IGG KW + + +N + SL+LMVA S LP GW R F+L +VNQ D S +ET F+ G+ ++L+ + K G+LVNN I ++V
Sbjct: 1 MGYEKFTWVIKNFSSLQSKYINSDKFVIGGCKWFLKGY---QNANYLSLFLMVATSKTLPC-GWRRYTRFRLTVVNQLSDELSQQRETETWFDQNVVLSGNRHMISLTKLNAKKGGFLVNNEVKIVVEVDV 127 The following BLAST results are available for this feature:
BLAST of Psat3g025560.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat3g025560.1_Ps_Cameor_v1a ID=Psat3g025560.1_Ps_Cameor_v1a; Name=Psat3g025560.1; organism=Pisum sativum; type=mRNA; length=1776bpback to top protein sequence of Psat3g025560.1_Ps_Cameor_v1a >Psat3g025560.1_Ps_Cameor_v1a ID=Psat3g025560.1_Ps_Cameor_v1a; Name=Psat3g025560.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=342bpback to top mRNA from alignment at chr3LG5:53849618..53851393- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat3g025560.1_Ps_Cameor_v1a ID=Psat3g025560.1_Ps_Cameor_v1a; Name=Psat3g025560.1; organism=Pisum sativum; type=mRNA; length=1776bp; location=Sequence derived from: chr3LG5:53849618..53851393- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr3LG5:53849618..53851393- >Psat3g025560.1_Ps_Cameor_v1a ID=Psat3g025560.1_Ps_Cameor_v1a; Name=Psat3g025560.1; organism=Pisum sativum; type=CDS; length=2052bp; location=Sequence derived from: chr3LG5:53849618..53851393- (Pisum sativumback to top |