Transcript Overview
| Name | Psat4g003200.2 |
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| Unique Name | Psat4g003200.2_Ps_Cameor_v1a |
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| Type | mRNA |
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| Organism | Pisum sativum (pea) |
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| Sequence length | 1255 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003200.2 | Psat4g003200.2_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat4g003200.2_Ps_Cameor_v1a | Psat4g003200.2_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003200.2.five_prime_utr1 | Psat4g003200.2.five_prime_utr1_Ps_Cameor_v1a | Pisum sativum | five_prime_UTR |
| Psat4g003200.2.five_prime_utr2 | Psat4g003200.2.five_prime_utr2_Ps_Cameor_v1a | Pisum sativum | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003200.2.exon1 | Psat4g003200.2.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
| Psat4g003200.2.exon2 | Psat4g003200.2.exon2_Ps_Cameor_v1a | Pisum sativum | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003200.2.cds1 | Psat4g003200.2.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g003200.2.three_prime_utr1 | Psat4g003200.2.three_prime_utr1_Ps_Cameor_v1a | Pisum sativum | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 75..95 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 97..117 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 103..117 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g003200.2_Ps_Cameor_v1a ID=Psat4g003200.2_Ps_Cameor_v1a; Name=Psat4g003200.2; organism=Pisum sativum; type=mRNA; length=1255bp
AAACCGAAAGAAAAAAAAAAGGAAGAGATATTAATATGTAATGTGAGAGG
GTTTTGGTTGGGGGTTTGCAAATTGCAAGTGCAGTTTGAAGCGTCTTCTT
TTTACATTATAAGTATGAATCATAAACGGAACCCTTTTTCTTAACCAATC
ACCACCTTTCAGATTCAGCATCACAAACACAATCCGGTGAGTCTATTTTC
CTTTTTGCTTGCTTTAAATCAAGAAAAACTATGGAACCTAAACAATTATC
GCTTAATTGCCCCCTTAAAAAATCTCAATTTTTGGGAACAAATTTAGGTT
ATTTGGTAGACCTAGGTTTCAAATTGGGCCGATAAGAGCTGCGTCTTGGT
GTCATCAGGCAGCGTCAACATTGCTCAGATTGAGCATCAGACGTGTTAGA
ATTGGCCATAGTGATTCACTACCCATTTCTTCATTCATTCATAGCTTTTC
ATTTTGTCTTAAATAGGGATCAATTGTTGAATAGTGCTTGATGCTAGGTT
TTTTCTAATGTCATTCTCTTCTATTTTCTCAAATTATACTGTACTGAAAA
GTGTCATTGATTATGCAGTTTTTAAATTATCATACCTGGAACACTCAAGC
TAAGAACATGGCAAATCAACCAAATAATCCGCCAAGTTCTGCAGCACTTA
TCCAGAAAACTGGTGAGGATCAAGTAATCAGTGTCCCTTCTGCTGCGGGC
TTTATAGATTCATTGGAACAACGGTATCAAAAAATCAAAGAGCACGCAGA
AGCTTATCCATATGTATGGGCTTCCTATATTGTTGTATATGGTGGCTTTG
GTCTCTGGACTACCTATAGATGGAGAAAGCTTCGCAGGACAGAGGACAGT
GTACGCAAACTTCAACGAAGACTACGTGACCTCATTGAAGCTGAACAACC
TGCTAGTTCTGCCAAAGTGGTTGAAAAGGGTTCCACATCTTCTGTGAAAC
CTTCCAAGTAGAGCCTACAACATTCTAATATTCCTTACCAGTTACAAAAG
CCAGGTAGATATTACTTTTCTTAATTTGAATCTTATTTTTCCTTCCAAAG
TTTTGTGGGTATTATTTTTTACCCAATCATTAGATGTACTATACTGCATA
CTCTTGTATGAGGAGACATGTTATGTATAAAACCATTATTTGTTCTCACC
AAACCATTTGAGATTTTAAGTTCATGGTAGATTTTTTATAGCTCATAAAC
TGGCTAATGTACCCGTTCATTCAATGAATCATGATACAAAAGAAATGTTG
GCTTC back to topprotein sequence of Psat4g003200.2_Ps_Cameor_v1a >Psat4g003200.2_Ps_Cameor_v1a ID=Psat4g003200.2_Ps_Cameor_v1a; Name=Psat4g003200.2_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=118bp
MANQPNNPPSSAALIQKTGEDQVISVPSAAGFIDSLEQRYQKIKEHAEAY
PYVWASYIVVYGGFGLWTTYRWRKLRRTEDSVRKLQRRLRDLIEAEQPAS
SAKVVEKGSTSSVKPSK* back to topmRNA from alignment at chr4LG4:3822171..3823425- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Psat4g003200.2_Ps_Cameor_v1a ID=Psat4g003200.2_Ps_Cameor_v1a; Name=Psat4g003200.2; organism=Pisum sativum; type=mRNA; length=1255bp; location=Sequence derived from: chr4LG4:3822171..3823425- (Pisum sativum
AAACCGAAAGAAAAAAAAAAGGAAGAGATATTAATATGTAATGTGAGAGG
GTTTTGGTTGGGGGTTTGCAAATTGCAAGTGCAGTTTGAAGCGTCTTCTT
TTTACATTATAAGTATGAATCATAAACGGAACCCTTTTTCTTAACCAATC
ACCACCTTTCAGATTCAGCATCACAAACACAATCCGGTGAGTCTATTTTC
CTTTTTGCTTGCTTTAAATCAAGAAAAACTATGGAACCTAAACAATTATC
GCTTAATTGCCCCCTTAAAAAATCTCAATTTTTGGGAACAAATTTAGGTT
ATTTGGTAGACCTAGGTTTCAAATTGGGCCGATAAGAGCTGCGTCTTGGT
GTCATCAGGCAGCGTCAACATTGCTCAGATTGAGCATCAGACGTGTTAGA
ATTGGCCATAGTGATTCACTACCCATTTCTTCATTCATTCATAGCTTTTC
ATTTTGTCTTAAATAGGGATCAATTGTTGAATAGTGCTTGATGCTAGGTT
TTTTCTAATGTCATTCTCTTCTATTTTCTCAAATTATACTGTACTGAAAA
GTGTCATTGATTATGCAGTTTTTAAATTATCATACCTGGAACACTCAAGC
TAAGAACATGGCAAATCAACCAAATAATCCGCCAAGTTCTGCAGCACTTA
TCCAGAAAACTGGTGAGGATCAAGTAATCAGTGTCCCTTCTGCTGCGGGC
TTTATAGATTCATTGGAACAACGGTATCAAAAAATCAAAGAGCACGCAGA
AGCTTATCCATATGTATGGGCTTCCTATATTGTTGTATATGGTGGCTTTG
GTCTCTGGACTACCTATAGATGGAGAAAGCTTCGCAGGACAGAGGACAGT
GTACGCAAACTTCAACGAAGACTACGTGACCTCATTGAAGCTGAACAACC
TGCTAGTTCTGCCAAAGTGGTTGAAAAGGGTTCCACATCTTCTGTGAAAC
CTTCCAAGTAGAGCCTACAACATTCTAATATTCCTTACCAGTTACAAAAG
CCAGGTAGATATTACTTTTCTTAATTTGAATCTTATTTTTCCTTCCAAAG
TTTTGTGGGTATTATTTTTTACCCAATCATTAGATGTACTATACTGCATA
CTCTTGTATGAGGAGACATGTTATGTATAAAACCATTATTTGTTCTCACC
AAACCATTTGAGATTTTAAGTTCATGGTAGATTTTTTATAGCTCATAAAC
TGGCTAATGTACCCGTTCATTCAATGAATCATGATACAAAAGAAATGTTG
GCTTC back to topCoding sequence (CDS) from alignment at chr4LG4:3822171..3823425- >Psat4g003200.2_Ps_Cameor_v1a ID=Psat4g003200.2_Ps_Cameor_v1a; Name=Psat4g003200.2; organism=Pisum sativum; type=CDS; length=708bp; location=Sequence derived from: chr4LG4:3822171..3823425- (Pisum sativum
ATGGCAAATCAACCAAATAATCCGCCAAGTTCTGCAGCACTTATCCAGAA
AACTGGTGAGGATCAAGTAATCAGTGTCCCTTCTGCTGCGGGCTTTATAG
ATTCATTGGAACAACGGTATCAAAAAATCAAAGAGCACGCAGAAGCTTAT
CCATATGTATGGGCTTCCTATATTGTTGTATATGGTGGCTTTGGTCTCTG
GACTACCTATAGATGGAGAAAGCTTCGCAGGACAGAGGACAGTGTACGCA
AACTTCAACGAAGACTACGTGACCTCATTGAAGCTGAACAACCTGCTAGT
TCTGCCAAAGTGGTTGAAAAGGGTTCCACATCTTCTGTGAAACCTTCCAA
GTAGATGGCAAATCAACCAAATAATCCGCCAAGTTCTGCAGCACTTATCC
AGAAAACTGGTGAGGATCAAGTAATCAGTGTCCCTTCTGCTGCGGGCTTT
ATAGATTCATTGGAACAACGGTATCAAAAAATCAAAGAGCACGCAGAAGC
TTATCCATATGTATGGGCTTCCTATATTGTTGTATATGGTGGCTTTGGTC
TCTGGACTACCTATAGATGGAGAAAGCTTCGCAGGACAGAGGACAGTGTA
CGCAAACTTCAACGAAGACTACGTGACCTCATTGAAGCTGAACAACCTGC
TAGTTCTGCCAAAGTGGTTGAAAAGGGTTCCACATCTTCTGTGAAACCTT
CCAAGTAG back to top
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