Psat4g003600.4
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: TPRL3_ERYCB (Tropinone reductase-like 3 OS=Erythroxylum coca OX=289672 PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 6.574e-57 Identity = 99/125 (79.20%), Postives = 116/125 (92.80%), Query Frame = 1 Query: 7 IPKRFKGKVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLLK 381
I +RF+GKVAIVTASTQGIGF+IA RLGLEGA+VVISSR+QKNVD A EKL+A+GI+V VVCHVSN +QRK+LID TV+KYGKIDVVVSNAAANPS +++L+TQESVLDK+WEINVKASILLL+
Sbjct: 9 IGRRFEGKVAIVTASTQGIGFAIAYRLGLEGAAVVISSRKQKNVDEAVEKLKAQGIEVLGVVCHVSNSKQRKNLIDTTVKKYGKIDVVVSNAAANPSTDALLETQESVLDKIWEINVKASILLLQ 133
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: SDRA_ARATH (Short-chain dehydrogenase/reductase SDRA OS=Arabidopsis thaliana OX=3702 GN=SDRA PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 6.132e-54 Identity = 89/126 (70.63%), Postives = 110/126 (87.30%), Query Frame = 1 Query: 4 EIPKRFKGKVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLLK 381
++P+R +GKVAIVTASTQGIGF I ER GLEGASVV+SSR+Q NVD A KL++KGID + +VCHVSN Q R++L++KTVQKYGKID+VV NAAANPS + IL ++E+VLDKLWEINVK+SILLL+
Sbjct: 4 KLPRRLEGKVAIVTASTQGIGFGITERFGLEGASVVVSSRKQANVDEAVAKLKSKGIDAYGIVCHVSNAQHRRNLVEKTVQKYGKIDIVVCNAAANPSTDPILSSKEAVLDKLWEINVKSSILLLQ 129
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: DHRS4_CAEEL (Dehydrogenase/reductase SDR family member 4 OS=Caenorhabditis elegans OX=6239 GN=dhrs-4 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.223e-29 Identity = 65/126 (51.59%), Postives = 92/126 (73.02%), Query Frame = 1 Query: 13 KRFKGKVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGID-VFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLLKVI 387
+RF+GKVAIVTA+T+GIG +IAERL EGASVVI SR QKNVD A E L+ KG+ V + H+++ +K L+D T+QK+GKI+++V+N NP+ IL+ + V DKL+E+NVKA + K++
Sbjct: 6 RRFEGKVAIVTAATKGIGLAIAERLLDEGASVVIGSRNQKNVDEAIEYLKNKGLTKVAGIAGHIASTDDQKKLVDFTLQKFGKINILVNNHGINPAFGHILEVSDQVWDKLFEVNVKAGFQMTKLV 131
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus OX=9913 GN=DHRS4 PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 3.133e-26 Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 1 Query: 28 KVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLLKVI 387
KVA+VTAST GIGF+IA RL +GA VV+SSR+Q+NVD A L+ +G+ V VCHV + R+ L+ V+ +G +D+++SNAA +P S++ E V DK+ ++NVKA+ LL K +
Sbjct: 34 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAV 153
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens OX=9606 GN=DHRS4 PE=1 SV=3) HSP 1 Score: 102.064 bits (253), Expect = 4.363e-26 Identity = 61/120 (50.83%), Postives = 81/120 (67.50%), Query Frame = 1 Query: 28 KVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLLKVI 387
KVA+VTAST GIGF+IA RL +GA VV+SSR+Q+NVD A L+ +G+ V VCHV + R+ L+ V+ +G ID++VSNAA NP SI+ E V DK +INVKA L+ K +
Sbjct: 33 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAV 152
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: DHRS2_HUMAN (Dehydrogenase/reductase SDR family member 2, mitochondrial OS=Homo sapiens OX=9606 GN=DHRS2 PE=1 SV=4) HSP 1 Score: 101.679 bits (252), Expect = 5.141e-26 Identity = 57/117 (48.72%), Postives = 79/117 (67.52%), Query Frame = 1 Query: 28 KVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLL 378
+VA+VT ST GIGF+IA RL +GA VVISSR+Q+NVD A KL+ +G+ V +VCHV + R+ L+ K ++ G +D +V +A NP V S L T E + DK+ +NVK+ LLL
Sbjct: 37 RVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLL 153
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii OX=9601 GN=DHRS4 PE=2 SV=3) HSP 1 Score: 100.908 bits (250), Expect = 1.008e-25 Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = 1 Query: 28 KVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLLKVI 387
KVA+VTAST GIGF+IA RL +GA VV+SSR+Q+NVD A L+ +G+ V VCHV + R+ L+ V+ +G ID++VSNAA NP S++ E V DK +INVKA L+ K +
Sbjct: 33 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAV 152
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=DHRS4 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.076e-24 Identity = 60/120 (50.00%), Postives = 80/120 (66.67%), Query Frame = 1 Query: 28 KVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLLKVI 387
KVAIVTAST GIG +IA RL +GA VVISSR+Q+NVD A L+A+G+ V VCHV + R+ L+ + +G ID++VSNAA NP ++ E V DK+ +INVKA L+ K +
Sbjct: 15 KVAIVTASTDGIGLAIARRLAQDGAHVVISSRKQQNVDRAVAALQAEGLSVTGTVCHVGKAEDRERLVATALNLHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAV 134
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa OX=9823 GN=DHRS4 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 1.356e-24 Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 1 Query: 13 KRFKGKVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLLKVI 387
K + KVA+VTAST GIG +IA RL +GA VV+SSR+Q+NVD L+ +G+ V VCHV + R+ L+ V +G +D++VSNAA NP +I+ E V DK+ +NVKA++L+ K +
Sbjct: 29 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAV 153
BLAST of Psat4g003600.4 vs. DB:Swiss
Match: DR4L2_HUMAN (Dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens OX=9606 GN=DHRS4L2 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.554e-24 Identity = 59/123 (47.97%), Postives = 80/123 (65.04%), Query Frame = 1 Query: 19 FKGKVAIVTASTQGIGFSIAERLGLEGASVVISSRRQKNVDVAAEKLRAKGIDVFAVVCHVSNGQQRKDLIDKTVQKYGKIDXXXXXXXXXXXXESILQTQESVLDKLWEINVKASILLLKVI 387
KVA+VTAST GIGF+IA RL + A VV+SSR+Q+NVD A L+ +G+ V VCHV + R+ L+ V+ +G ID++VSNAA NP S++ E V DK +INVKA L+ K +
Sbjct: 28 LTNKVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAV 150 The following BLAST results are available for this feature:
BLAST of Psat4g003600.4 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g003600.4_Ps_Cameor_v1a ID=Psat4g003600.4_Ps_Cameor_v1a; Name=Psat4g003600.4; organism=Pisum sativum; type=mRNA; length=3675bpback to top protein sequence of Psat4g003600.4_Ps_Cameor_v1a >Psat4g003600.4_Ps_Cameor_v1a ID=Psat4g003600.4_Ps_Cameor_v1a; Name=Psat4g003600.4_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=132bpback to top mRNA from alignment at chr4LG4:4034916..4038590- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat4g003600.4_Ps_Cameor_v1a ID=Psat4g003600.4_Ps_Cameor_v1a; Name=Psat4g003600.4; organism=Pisum sativum; type=mRNA; length=3675bp; location=Sequence derived from: chr4LG4:4034916..4038590- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr4LG4:4034916..4038590- >Psat4g003600.4_Ps_Cameor_v1a ID=Psat4g003600.4_Ps_Cameor_v1a; Name=Psat4g003600.4; organism=Pisum sativum; type=CDS; length=792bp; location=Sequence derived from: chr4LG4:4034916..4038590- (Pisum sativumback to top |