Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Psat4g004080.1 Psat4g004080.1_Ps_Cameor_v1a-protein Pisum sativum polypeptide
Psat4g004080.1_Ps_Cameor_v1a Psat4g004080.1_Ps_Cameor_v1a Pisum sativum polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat4g004080.1.five_prime_utr1 Psat4g004080.1.five_prime_utr1_Ps_Cameor_v1a Pisum sativum five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat4g004080.1.cds1 Psat4g004080.1.cds1_Ps_Cameor_v1a Pisum sativum CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat4g004080.1.exon1 Psat4g004080.1.exon1_Ps_Cameor_v1a Pisum sativum exon
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat4g004080.1.three_prime_utr1 Psat4g004080.1.three_prime_utr1_Ps_Cameor_v1a Pisum sativum three_prime_UTR
Homology
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYT5_ARATH (Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana OX=3702 GN=CYS5 PE=2 SV=2)
HSP 1 Score: 106.686 bits (265), Expect = 8.768e-30
Identity = 48/91 (52.75%), Postives = 68/91 (74.73%), Query Frame = 1
Query: 76 QAGGYSPIEDINDSHVIEIANFAVTQYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGEGS-VSKIYEAVVYEKLWLHFRNLTSFEPAQ 345
+ GG+SPI ++ D V+EI FAV++Y+K+S + LK V+ GE+QVV+GTNY L ++A +G VSK Y A+V++K W+ FRNLTSFEPA
Sbjct: 27 RVGGWSPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRNLTSFEPAN 117
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYT1_ACTDE (Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa OX=3627 PE=1 SV=1)
HSP 1 Score: 103.605 bits (257), Expect = 1.119e-28
Identity = 48/96 (50.00%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 49 VSARKLSSPQAGGYSPIEDINDSHVIEIANFAVTQYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGEGSVSKIYEAVVYEKLWLHFRNLTSFE 336
V RKL + AGG+ PIE +N + V ++A FAV++++KQ+ +L+ V++G +QVVAGTNY L ++A +G+V YEAVV++K W+HFRNLTSF
Sbjct: 21 VGGRKLVA--AGGWRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYTQVVAGTNYRLVIAAKDGAVVGNYEAVVWDKPWMHFRNLTSFR 114
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0803200 PE=1 SV=2)
HSP 1 Score: 88.1965 bits (217), Expect = 2.561e-22
Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = 1
Query: 61 KLSS---PQAGGYSPIEDINDSHVIEIANFAVTQYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGEGSVSKIYEAVVYEKLWLHFRNLTSFEPAQA 348
K+SS P GG P+ + ND H++++A FAVT+++K++ + L+ K++ + QVVAGT Y+ T+ EG K+YEA V+EK W+ F+ L F+P A
Sbjct: 38 KMSSDGGPVLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDA 136
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYT8_ORYSJ (Cysteine proteinase inhibitor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0429000 PE=2 SV=1)
HSP 1 Score: 84.7297 bits (208), Expect = 3.470e-21
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 49 VSARKLSSPQAGGYSPIEDINDSHVIEIANFAVTQYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGE-GSVSKIYEAVVYEKLWLHFRNLTSFEPAQA 348
V + P GG+SPI D+ D H+ E+ +AV ++ S L+ +V GE QVV+G NY L +SA + + Y AVVYE+ W + R LTSF+PA A
Sbjct: 22 VGGNRGHGPLVGGWSPITDVGDPHIQELGGWAVERHASLSSDGLRFRRVTSGEQQVVSGMNYRLVVSASDPAGATASYVAVVYEQSWTNTRQLTSFKPAAA 122
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYT1_MAIZE (Cystatin-1 OS=Zea mays OX=4577 GN=RAMDAZC7 PE=2 SV=1)
HSP 1 Score: 78.1814 bits (191), Expect = 1.976e-18
Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 79 AGGYSPIEDI----NDSHVIEIANFAVTQYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGEGSVSKIYEAVVYEKLWLHFRNLTSFEPAQ 345
AGG I+D+ ND + E+A FAV ++++++ A L K++K ++QVVAGT Y+LT+ +G V K+YEA V+EK W +F+ L F+P +
Sbjct: 41 AGG---IKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKDGEVKKLYEAKVWEKPWENFKQLQEFKPVE 130
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYT4_ARATH (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=2)
HSP 1 Score: 76.6406 bits (187), Expect = 5.084e-18
Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 94 PIEDINDSHVIEIANFAVTQYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGEGSVS-KIYEAVVYEKLWLHFRNLTSFE 336
PI++++D V+ +A +A+ +++K+S KL KV++G +QVV+GT Y L ++A +G K YEAVV EKLWLH ++L SF+
Sbjct: 34 PIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEGTTQVVSGTKYDLKIAAKDGGGKIKNYEAVVVEKLWLHSKSLESFK 115
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYT1_HORVU (Cysteine proteinase inhibitor OS=Hordeum vulgare OX=4513 GN=ICY PE=1 SV=1)
HSP 1 Score: 73.9442 bits (180), Expect = 4.009e-17
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 91 SPIEDINDSHVIEIANFAVTQYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGEGSVSKIYEAVVYEKLWLHFRNLTSFEPA 342
+P ND IE+A FAV +++ ++ A L+ K++K QVVAG ++ T+ EG K+YEA V+EK W +F+ L F+PA
Sbjct: 23 APAGRENDLETIELARFAVAEHNAKANALLEFEKLVKVRQQVVAGCMHYFTIEVKEGGAKKLYEAKVWEKAWENFKQLQEFKPA 106
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYT6_ORYSJ (Cysteine proteinase inhibitor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0210200 PE=3 SV=1)
HSP 1 Score: 71.633 bits (174), Expect = 4.213e-16
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 85 GYSPIEDINDSHVIEIANFAVTQYDKQSGA-KLKLNKVIKGESQVVAGTNYHLTLSA--GEGSVSKIYEAVVYEKLWLHFRNLTSFE 336
G+SPI++I+D H+ E+ +A+T+ ++ S + +L ++V GE QVV+G NY L + A G G V+ Y AVV+E+ W + R L SF+
Sbjct: 22 GWSPIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVSGMNYRLEIEAASGGGDVTGSYGAVVFEQEWSNTRKLISFD 108
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYT3_ARATH (Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana OX=3702 GN=CYS3 PE=2 SV=2)
HSP 1 Score: 71.2478 bits (173), Expect = 6.873e-16
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 82 GGYSPIEDINDSHVIE-IANFAVTQYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGEGSVSKIYEAVVYEKLWLHFRNLTSFEPA 342
GG + +S IE +A FA+ +++KQ L+ K++K QVVAGT YHLTL A EG +K +EA V+ K W++F+ L F+ +
Sbjct: 36 GGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAKEGDQTKNFEAKVWVKPWMNFKQLQEFKES 123
BLAST of Psat4g004080.1 vs. DB:Swiss
Match:
CYTA_HELAN (Cysteine proteinase inhibitor A OS=Helianthus annuus OX=4232 PE=1 SV=1)
HSP 1 Score: 67.781 bits (164), Expect = 5.128e-15
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 118 HVIEIANFAVTQYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGEGSVSKIYEAVVYEKLWLHFRNLTSFEPAQA 348
+ E+A FAV +++K+ A L+ KV+ + QVVAG Y++TL A G V K YEA V+ K W +F+ L F+P A
Sbjct: 3 EIDELARFAVDEHNKKQNALLEFGKVVNTKEQVVAGKMYYITLEATNGGVKKTYEAKVWVKPWENFKELQEFKPVDA 79
The following BLAST results are available for this feature:
BLAST of Psat4g004080.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (
BLAST: P. sativum Cameor genome v1a vs. Swissprot )
Total hits: 10
100 200 300 400 500 600 700 800 900 1000 1100 1200 Expect = 8.77e-30 / Id = 52.75 Expect = 1.12e-28 / Id = 50.00 Expect = 2.56e-22 / Id = 41.41 Expect = 3.47e-21 / Id = 41.58 Expect = 1.98e-18 / Id = 41.94 Expect = 5.08e-18 / Id = 45.12 Expect = 4.01e-17 / Id = 40.48 Expect = 4.21e-16 / Id = 41.38 Expect = 6.87e-16 / Id = 40.91 Expect = 5.13e-15 / Id = 42.86 Sequence CYT5_ARATH CYT1_ACTDE CYT1_ORYSJ CYT8_ORYSJ CYT1_MAIZE CYT4_ARATH CYT1_HORVU CYT6_ORYSJ CYT3_ARATH CYTA_HELAN
Match Name E-value Identity Description
CYT5_ARATH 8.768e-30 52.75 Cysteine proteinase inhibitor 5 OS=Arabidopsis tha... [more]
CYT1_ACTDE 1.119e-28 50.00 Cysteine proteinase inhibitor 1 OS=Actinidia delic... [more]
CYT1_ORYSJ 2.561e-22 41.41 Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
CYT8_ORYSJ 3.470e-21 41.58 Cysteine proteinase inhibitor 8 OS=Oryza sativa su... [more]
CYT1_MAIZE 1.976e-18 41.94 Cystatin-1 OS=Zea mays OX=4577 GN=RAMDAZC7 PE=2 SV... [more]
CYT4_ARATH 5.084e-18 45.12 Cysteine proteinase inhibitor 4 OS=Arabidopsis tha... [more]
CYT1_HORVU 4.009e-17 40.48 Cysteine proteinase inhibitor OS=Hordeum vulgare O... [more]
CYT6_ORYSJ 4.213e-16 41.38 Cysteine proteinase inhibitor 6 OS=Oryza sativa su... [more]
CYT3_ARATH 6.873e-16 40.91 Cysteine proteinase inhibitor 3 OS=Arabidopsis tha... [more]
CYTA_HELAN 5.128e-15 42.86 Cysteine proteinase inhibitor A OS=Helianthus annu... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Psat4g004080.1_Ps_Cameor_v1a ID=Psat4g004080.1_Ps_Cameor_v1a; Name=Psat4g004080.1; organism=Pisum sativum; type=mRNA; length=1261bp TATTGTCATACCGATCAAACCACCTAACCCTTCCATCACCCACCAAATCA AAAACTCCTATCCTAAAACTATTGTCATACCGATCAAACCACCTAACCCT TCCATCACCCACCAGAAAAGGAAAGAGACTAGGAGATCCCCTTCCTTCAT ATCCCATAATCGATGTAACGTTAATCACTAATGAATTCCTCACATCAAAA ATAAAATTAACAAAATGGCATGTGAAAAGTTATTATATTTGCTTAGGCAT AACTGCAGCTCATGGATCTAACCCCCCTAATAATTTTAATCTGTGGGCTA TAGCAAAGCATAACTTATACTACTTTCCAACAACTTCACTTAATGTGATC TTGAAACAGTAACTTACTTGTGCTTGCAAGCAATCTATATCTATCAATAT ATAAATGACCGTCTAAAGGCTAACTGCTCAAAACAACACAACACATCTCC GAAGCTTAAAAAAAGAGCAATCATGAAATTTCAAACCCTAATTCTTCTCA CCCTTCTTCTAATAGCCTCTGTATCTGCAAGGAAACTATCTTCGCCGCAG GCTGGTGGTTATAGCCCCATCGAAGACATCAACGATTCTCACGTCATCGA AATCGCTAATTTCGCCGTCACTCAGTACGACAAGCAAAGTGGTGCGAAAC TGAAGCTTAATAAGGTAATCAAAGGTGAATCTCAGGTTGTTGCAGGGACT AACTACCACCTCACTCTCTCCGCCGGCGAAGGTTCCGTTTCAAAGATCTA TGAAGCTGTTGTGTATGAGAAGTTATGGCTTCACTTCCGTAACCTCACTT CGTTTGAACCTGCACAAGCTTAAATTATAGAAAATTATTAAAATGTTGCG CTTATCTCTTTATAGCATCATTCCCCTGTTATGTAATGAATTATTATTGT CATTATTTATATAAATAAAATTTTATGTCTTCAAAAATACAAGTTCATTA CTACTCTTCAGTTTTTCTTTCTTTCTATTTTGGCTGATTTCTAATAAGGA GGGATTAATTAGTCTATTTTATTTTATTTTTAATTTAGTTGACCGTTTAA AAAATGAATGGTTTTAAATTTTTTTATAATTACAATGCATTTCAATGTCT TTGTTTCTTTAATGACTTATGCAGATGTAATTTGACATACATTTGTTGAA CCTAGGCATAACTTGTGCTTGGATTCCTGTTGTTTCCTTTTTAATACATT ATGTAATTTCAATTACTTTTGAGATTGTTCTGATAATTTAGAATGCAAAA CTTGTTTCTTA back to top protein sequence of Psat4g004080.1_Ps_Cameor_v1a
>Psat4g004080.1_Ps_Cameor_v1a ID=Psat4g004080.1_Ps_Cameor_v1a; Name=Psat4g004080.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=117bp MKFQTLILLTLLLIASVSARKLSSPQAGGYSPIEDINDSHVIEIANFAVT QYDKQSGAKLKLNKVIKGESQVVAGTNYHLTLSAGEGSVSKIYEAVVYEK LWLHFRNLTSFEPAQA* back to top mRNA from alignment at chr4LG4:4444364..4445624-
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g004080.1_Ps_Cameor_v1a ID=Psat4g004080.1_Ps_Cameor_v1a; Name=Psat4g004080.1; organism=Pisum sativum; type=mRNA; length=1261bp; location=Sequence derived from: chr4LG4:4444364..4445624- (Pisum sativumTATTGTCATACCGATCAAACCACCTAACCCTTCCATCACCCACCAAATCA
AAAACTCCTATCCTAAAACTATTGTCATACCGATCAAACCACCTAACCCT
TCCATCACCCACCAGAAAAGGAAAGAGACTAGGAGATCCCCTTCCTTCAT
ATCCCATAATCGATGTAACGTTAATCACTAATGAATTCCTCACATCAAAA
ATAAAATTAACAAAATGGCATGTGAAAAGTTATTATATTTGCTTAGGCAT
AACTGCAGCTCATGGATCTAACCCCCCTAATAATTTTAATCTGTGGGCTA
TAGCAAAGCATAACTTATACTACTTTCCAACAACTTCACTTAATGTGATC
TTGAAACAGTAACTTACTTGTGCTTGCAAGCAATCTATATCTATCAATAT
ATAAATGACCGTCTAAAGGCTAACTGCTCAAAACAACACAACACATCTCC
GAAGCTTAAAAAAAGAGCAATC ATGAAATTTCAAACCCTAATTCTTCTCA
CCCTTCTTCTAATAGCCTCTGTATCTGCAAGGAAACTATCTTCGCCGCAG
GCTGGTGGTTATAGCCCCATCGAAGACATCAACGATTCTCACGTCATCGA
AATCGCTAATTTCGCCGTCACTCAGTACGACAAGCAAAGTGGTGCGAAAC
TGAAGCTTAATAAGGTAATCAAAGGTGAATCTCAGGTTGTTGCAGGGACT
AACTACCACCTCACTCTCTCCGCCGGCGAAGGTTCCGTTTCAAAGATCTA
TGAAGCTGTTGTGTATGAGAAGTTATGGCTTCACTTCCGTAACCTCACTT
CGTTTGAACCTGCACAAGCTTAA ATTATAGAAAATTATTAAAATGTTGCG
CTTATCTCTTTATAGCATCATTCCCCTGTTATGTAATGAATTATTATTGT
CATTATTTATATAAATAAAATTTTATGTCTTCAAAAATACAAGTTCATTA
CTACTCTTCAGTTTTTCTTTCTTTCTATTTTGGCTGATTTCTAATAAGGA
GGGATTAATTAGTCTATTTTATTTTATTTTTAATTTAGTTGACCGTTTAA
AAAATGAATGGTTTTAAATTTTTTTATAATTACAATGCATTTCAATGTCT
TTGTTTCTTTAATGACTTATGCAGATGTAATTTGACATACATTTGTTGAA
CCTAGGCATAACTTGTGCTTGGATTCCTGTTGTTTCCTTTTTAATACATT
ATGTAATTTCAATTACTTTTGAGATTGTTCTGATAATTTAGAATGCAAAA
CTTGTTTCTTA back to top Coding sequence (CDS) from alignment at chr4LG4:4444364..4445624-
>Psat4g004080.1_Ps_Cameor_v1a ID=Psat4g004080.1_Ps_Cameor_v1a; Name=Psat4g004080.1; organism=Pisum sativum; type=CDS; length=702bp; location=Sequence derived from: chr4LG4:4444364..4445624- (Pisum sativum ATGAAATTTCAAACCCTAATTCTTCTCACCCTTCTTCTAATAGCCTCTGT ATCTGCAAGGAAACTATCTTCGCCGCAGGCTGGTGGTTATAGCCCCATCG AAGACATCAACGATTCTCACGTCATCGAAATCGCTAATTTCGCCGTCACT CAGTACGACAAGCAAAGTGGTGCGAAACTGAAGCTTAATAAGGTAATCAA AGGTGAATCTCAGGTTGTTGCAGGGACTAACTACCACCTCACTCTCTCCG CCGGCGAAGGTTCCGTTTCAAAGATCTATGAAGCTGTTGTGTATGAGAAG TTATGGCTTCACTTCCGTAACCTCACTTCGTTTGAACCTGCACAAGCTTA AATGAAATTTCAAACCCTAATTCTTCTCACCCTTCTTCTAATAGCCTCTG TATCTGCAAGGAAACTATCTTCGCCGCAGGCTGGTGGTTATAGCCCCATC GAAGACATCAACGATTCTCACGTCATCGAAATCGCTAATTTCGCCGTCAC TCAGTACGACAAGCAAAGTGGTGCGAAACTGAAGCTTAATAAGGTAATCA AAGGTGAATCTCAGGTTGTTGCAGGGACTAACTACCACCTCACTCTCTCC GCCGGCGAAGGTTCCGTTTCAAAGATCTATGAAGCTGTTGTGTATGAGAA GTTATGGCTTCACTTCCGTAACCTCACTTCGTTTGAACCTGCACAAGCTT AA back to top