Psat4g004480.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat4g004480.1 vs. DB:Swiss
Match: OFP9_ARATH (Probable transcription repressor OFP9 OS=Arabidopsis thaliana OX=3702 GN=OFP9 PE=3 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 2.017e-32 Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 1 Query: 133 TLAHAMVQERLDQMIREKLETRH-----------VXXXXXXXXXXXXFVVMLAMEKCSYDPREDFRESMMEMITVNRLRDAKDLRSLLNYYMSMNSDEYHSLILEIFHEVCTNLFLS 450 +LAH MVQE+L+QMIRE E H R+ E TKF+VM+AMEKCS+DPR+DFR+SM+EMI N++++A +LRSLL YY+SMN EY S ILEIF+EVC +LF S Sbjct: 299 SLAHYMVQEKLEQMIRETQEATHQEKIRQQKMRRRRRRSEGSISSTKFIVMMAMEKCSFDPRKDFRDSMVEMIVANKIKEADELRSLLEYYLSMNPREYRSAILEIFYEVCADLFRS 415
BLAST of Psat4g004480.1 vs. DB:Swiss
Match: OFP1_ARATH (Transcription repressor OFP1 OS=Arabidopsis thaliana OX=3702 GN=OFP1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.082e-13 Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 265 KCSYDPREDFRESMMEMITVNRLRDAKDLRSLLNYYMSMNSDEYHSLILEIFHEVCTNLFLS 450 K S DP+ DF+ESM EMI N++R KDL LL Y+ +NSDEYH++I+ +F ++ +L L Sbjct: 204 KASVDPKRDFKESMEEMIAENKIRATKDLEELLACYLCLNSDEYHAIIINVFKQIWLDLNLP 265
BLAST of Psat4g004480.1 vs. DB:Swiss
Match: OFP2_ARATH (Transcription repressor OFP2 OS=Arabidopsis thaliana OX=3702 GN=OFP2 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 5.628e-12 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 253 LAMEKCSYDPREDFRESMMEMITVNRLRDAKDLRSLLNYYMSMNSDEYHSLILEIFHEVCTNL 441 A+ K S DP++DFRESM+EMI N +R +KDL LL Y+++N EYH LI+ +F ++ L Sbjct: 254 FAVMKRSVDPKKDFRESMIEMIEENNIRASKDLEDLLACYLTLNPKEYHDLIIHVFEQIWLQL 316
BLAST of Psat4g004480.1 vs. DB:Swiss
Match: OFP3_ARATH (Transcription repressor OFP3 OS=Arabidopsis thaliana OX=3702 GN=OFP3 PE=1 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.028e-11 Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1 Query: 241 FVVMLAMEKCSYDPREDFRESMMEMITVNRLRDAKDLRSLLNYYMSMNSDEYHSLILEIFHEVCTNL 441 F ++L+ S DP +DFRESM+EMI N++R+ KDL LL Y+S+NS EYH +I++ F +L Sbjct: 226 FAIVLS----SVDPEKDFRESMVEMIMENKMREQKDLEDLLACYLSLNSSEYHDVIIKAFENTWLHL 288
BLAST of Psat4g004480.1 vs. DB:Swiss
Match: OFP5_ARATH (Transcription repressor OFP5 OS=Arabidopsis thaliana OX=3702 GN=OFP5 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.744e-11 Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 1 Query: 253 LAMEKCSYDPREDFRESMMEMITVNRLRDAKDLRSLLNYYMSMNSDEYHSLILEIFHEV 429 A+ KCS DP++DFR+SM+EMI N + ++L+ LL Y+ +N+DEYH +I+ +F +V Sbjct: 284 FAVVKCSSDPQKDFRDSMIEMIMENGINHPEELKELLVCYLRLNTDEYHDMIISVFQQV 342
BLAST of Psat4g004480.1 vs. DB:Swiss
Match: OFP4_ARATH (Transcription repressor OFP4 OS=Arabidopsis thaliana OX=3702 GN=OFP4 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 7.716e-11 Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 Query: 253 LAMEKCSYDPREDFRESMMEMITVNRLRDAKDLRSLLNYYMSMNSDEYHSLILEIFHEVC 432 A+ K S DP +DFRESM+EMI N +R + D+ LL Y+++N EYH LI+++F +V Sbjct: 245 FAVIKSSIDPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVFVQVW 304
BLAST of Psat4g004480.1 vs. DB:Swiss
Match: OFP8_ARATH (Transcription repressor OFP8 OS=Arabidopsis thaliana OX=3702 GN=OFP8 PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 1.403e-8 Identity = 26/64 (40.62%), Postives = 42/64 (65.62%), Query Frame = 1 Query: 253 LAMEKCSYDPREDFRESMMEMITVNRLRDAKDLRSLLNYYMSMNSDEYHSLILEIFHEVCTNLF 444 A+ K S DP EDFR SM+EMI ++ +L+ LL ++S+NS ++H +I+++F E+ LF Sbjct: 156 FAVVKKSKDPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFLEIYATLF 219
BLAST of Psat4g004480.1 vs. DB:Swiss
Match: OFP6_ARATH (Transcription repressor OFP6 OS=Arabidopsis thaliana OX=3702 GN=OFP6 PE=1 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 9.914e-8 Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 1 Query: 253 LAMEKCSYDPREDFRESMMEMITVNRLRDAKDLRSLLNYYMSMNSDEYHSLILEIFHEV 429 +A+EK S DP DFR+SM++MI N++ +LR LL ++S+NS +H +I+ F E+ Sbjct: 68 VAVEKDSDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEI 126
BLAST of Psat4g004480.1 vs. DB:Swiss
Match: OFP8_ORYSJ (Transcription repressor OFP8 OS=Oryza sativa subsp. japonica OX=39947 GN=OFP8 PE=1 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 2.772e-7 Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1 Query: 247 VMLAMEKCSYDPREDFRESMMEMITVNRLRDAKDLRSLLNYYMSMNSDEYHSLILEIFHEVCT 435 V +A+E S +P EDFRESM++M+ + DL LL+ ++S+NS +H LIL F ++ T Sbjct: 155 VAVAVE--SAEPYEDFRESMVQMVVEKEIYAWDDLNDLLHQFLSLNSPRHHPLILHAFADLWT 215 The following BLAST results are available for this feature:
BLAST of Psat4g004480.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 9
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g004480.1_Ps_Cameor_v1a ID=Psat4g004480.1_Ps_Cameor_v1a; Name=Psat4g004480.1; organism=Pisum sativum; type=mRNA; length=680bpback to top protein sequence of Psat4g004480.1_Ps_Cameor_v1a >Psat4g004480.1_Ps_Cameor_v1a ID=Psat4g004480.1_Ps_Cameor_v1a; Name=Psat4g004480.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=156bpback to top mRNA from alignment at chr4LG4:4840963..4841642+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat4g004480.1_Ps_Cameor_v1a ID=Psat4g004480.1_Ps_Cameor_v1a; Name=Psat4g004480.1; organism=Pisum sativum; type=mRNA; length=680bp; location=Sequence derived from: chr4LG4:4840963..4841642+ (Pisum sativumback to top Coding sequence (CDS) from alignment at chr4LG4:4840963..4841642+ >Psat4g004480.1_Ps_Cameor_v1a ID=Psat4g004480.1_Ps_Cameor_v1a; Name=Psat4g004480.1; organism=Pisum sativum; type=CDS; length=936bp; location=Sequence derived from: chr4LG4:4840963..4841642+ (Pisum sativumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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