Transcript Overview
| Name | Psat4g005200.1 |
|---|
| Unique Name | Psat4g005200.1_Ps_Cameor_v1a |
|---|
| Type | mRNA |
|---|
| Organism | Pisum sativum (pea) |
|---|
| Sequence length | 2198 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g005200.1 | Psat4g005200.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat4g005200.1_Ps_Cameor_v1a | Psat4g005200.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g005200.1.cds1 | Psat4g005200.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
| Psat4g005200.1.cds2 | Psat4g005200.1.cds2_Ps_Cameor_v1a | Pisum sativum | CDS |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat4g005200.1.exon1 | Psat4g005200.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
| Psat4g005200.1.exon2 | Psat4g005200.1.exon2_Ps_Cameor_v1a | Pisum sativum | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 181..218
e-value: 2.6E-6
score: 37.0 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 181..219
score: 10.852 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 156..229
e-value: 2.7E-13
score: 51.1 |
| None | No IPR available | PFAM | PF13920 | zf-C3HC4_3 | coord: 178..223
e-value: 1.7E-11
score: 43.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 109..124 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 88..107 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 88..151 |
| None | No IPR available | CDD | cd16449 | RING-HC | coord: 181..218
e-value: 3.38356E-8
score: 46.3065 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 169..226 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat4g005200.1_Ps_Cameor_v1a ID=Psat4g005200.1_Ps_Cameor_v1a; Name=Psat4g005200.1; organism=Pisum sativum; type=mRNA; length=2198bp
ATGGTTGAGGTGGGGTCTGTGCCGTGCTGTTCAGGTAGATTGGTGGTGAT
TGGAATTTCTGATTTATGATTATATTAGTCTTGAGTTCCTTGGTTTTCTG
ATTTTTAGTTTGGTCTGGTGTTGTTAGATGGTAGTGGTAACATGTTGAAC
ATTAGTAGGAGACTTGTTTCTCTTATTTATATTCAATTCAGCAGGAATCA
ATCTTTAACTCTCGCAGACCTAGTTATATTGTGTTGGAGGATTTATTTGT
TTTCTTTCTAATGCCAACATTTTAGGAGGTTTTCAAATATTGGATAGTCT
TTAATGTATTTCCTAGTTTATCTATTGGCGGTGAATGCATCAGAATCAAG
AAAGAATCGGTCTAGGATTCTTTTAGTTGGCGTGCAGTTTGAATCGTTAT
TGTTTTGTGCAGATTGAAGCCTAATTGATTTTAGTAGAATCAGTGTGTGT
TTATTGGTCAAGAATTATTCGCCTGCCGAAATTTTTGAAGGAATTAGCGG
TTGTGGTGTATACCCGAAGATTTTCCGGTGTGTTTCATTAGTTAGACAGT
GATCATTGAGTAAATAGCCAATATCTAGCAATTCTTCACCTTGAGCTTTT
AGTGGTCCAATTTTCCGATCGGAACCTGCCATATTGTGTTTGCGTTCAGG
TCATCTTTGGTCTGCTTAACTGGACAACATGTTTTGGGTTTGCCTATTTG
TGTTGGTAGTTGTTTTGTGGAAGGTGCCACGAATTTTCTAAAATTGTCTA
AGAGTTTTATTCTGGATGTTTTTCTGCTTTTGGATATTTTCTTGTGCTTC
TTTTTTGGAGTTCCGGTGCTTTTCGGCCGCACTAGTGCATGTTGTTGGTT
TTTACTTATGTTACTCTCGTAGACTATCATCGAATGGTCAATCCCATTAA
GCTTTCGTTCCTGAACATTGATTCTCAAAATTTCAAATTTGTTGTTGGTG
GTTGCATCAAGGAAGGTTTGGGTGTGGTGGTTGATCATGAAATGCATAAT
AATTATTTAACTAAGTTTGAATTAATACACAATATTTTTAGTCATAAATA
GCATAATTTTTTTCTTCATTATTACTAAAATTACAAATTTATCGTACAAG
GTACAAAAACGAAATAATGGAAAGTAATTAATGAGGGAAGGGGCCCAAGT
GCAAATATAGTAAAGTGGTCAAGACTATGCAGAGTCTGTACGTAACGTAA
TTTTCGTTATAACCTGAATTCGGAAATTTTGGGTATACAACTCAAACAAC
AAATAACCTCAATTCATTAATTTATCACAACCGTTTCCTCATCTCTCTCT
CTCTCTTAAGTCTCAATCTCTCTATTTTGTCCATCTCTAAAATTTCACTT
CTCTTCCCATCATTTGAGTTTTTTCTTTTATCTTATCTCTCTCACACAAA
CTTCCAAACAACTTTCTAATTTGAACAAAAGAATCTCCAAATCAAACTAT
TTTAAACCTTGCATTTCTTTGGACACTTCTATTCAACTCTACCGTACACC
GCATCTCACCGGATCTCGCTCCGTTTTTTTTTAATTTTGCAGTTTCTATC
TACCGAGTTAGTATGAGTCAACTCGGTCTCATATTACATGAATCGCTCCG
TCCTCAAAGAGAAGCAAGAACCTTACTCGGTTTATTAACGGAACAAATGG
ACGCTGCAGATTCATCAACAACGAGGAGACGTAGTCTTAAAGAACGGTTC
AGATTCACCGGTATCGGTGGTTGCTGTGGTGCCACTTGGGTTTTCCGTCC
AATTATCAGACACGAACATCACCACCAACAACAACAACGACAACGAGAGG
GAGCAAGAGAAGGAGAAACTAATGTAGAGCAAGAAGAACTACAGGTTCAA
GATCCGAATCCGGATCCGTCTAGTTCTGGCATGAATCTTGCGGCGGCATT
GGCGGCGGAGCGTCAGATGAGAGGATCGGAGGAAAGTAGCGGCGGCGAAA
GAGGGACGCCGTGGAGAGTTTCGTTAATGAAACTGTTGGAGGAAACGGAA
GTGGAAAGTGAGAGTACCACGACGGTTATGGAGGGGAGTGATTCAGTGTG
CTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATACCGTGTGGAC
ACACTTTTTGTAGAGTGTGTTCAAGGGAACTGTGGTTGAATCGAGGGAAC
TGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTAGACATTTTCTGA back to topprotein sequence of Psat4g005200.1_Ps_Cameor_v1a >Psat4g005200.1_Ps_Cameor_v1a ID=Psat4g005200.1_Ps_Cameor_v1a; Name=Psat4g005200.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=230bp
MVEVGSVPCCSVSIYRVSMSQLGLILHESLRPQREARTLLGLLTEQMDAA
DSSTTRRRSLKERFRFTGIGGCCGATWVFRPIIRHEHHHQQQQRQREGAR
EGETNVEQEELQVQDPNPDPSSSGMNLAAALAAERQMRGSEESSGGERGT
PWRVSLMKLLEETEVESESTTTVMEGSDSVCCVCMGRKKGAAFIPCGHTF
CRVCSRELWLNRGNCPLCNRSILEILDIF* back to topmRNA from alignment at chr4LG4:5371480..5373677+ Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >Psat4g005200.1_Ps_Cameor_v1a ID=Psat4g005200.1_Ps_Cameor_v1a; Name=Psat4g005200.1; organism=Pisum sativum; type=mRNA; length=2198bp; location=Sequence derived from: chr4LG4:5371480..5373677+ (Pisum sativum
ATGGTTGAGGTGGGGTCTGTGCCGTGCTGTTCAGGTAGATTGGTGGTGAT
TGGAATTTCTGATTTATGATTATATTAGTCTTGAGTTCCTTGGTTTTCTG
ATTTTTAGTTTGGTCTGGTGTTGTTAGATGGTAGTGGTAACATGTTGAAC
ATTAGTAGGAGACTTGTTTCTCTTATTTATATTCAATTCAGCAGGAATCA
ATCTTTAACTCTCGCAGACCTAGTTATATTGTGTTGGAGGATTTATTTGT
TTTCTTTCTAATGCCAACATTTTAGGAGGTTTTCAAATATTGGATAGTCT
TTAATGTATTTCCTAGTTTATCTATTGGCGGTGAATGCATCAGAATCAAG
AAAGAATCGGTCTAGGATTCTTTTAGTTGGCGTGCAGTTTGAATCGTTAT
TGTTTTGTGCAGATTGAAGCCTAATTGATTTTAGTAGAATCAGTGTGTGT
TTATTGGTCAAGAATTATTCGCCTGCCGAAATTTTTGAAGGAATTAGCGG
TTGTGGTGTATACCCGAAGATTTTCCGGTGTGTTTCATTAGTTAGACAGT
GATCATTGAGTAAATAGCCAATATCTAGCAATTCTTCACCTTGAGCTTTT
AGTGGTCCAATTTTCCGATCGGAACCTGCCATATTGTGTTTGCGTTCAGG
TCATCTTTGGTCTGCTTAACTGGACAACATGTTTTGGGTTTGCCTATTTG
TGTTGGTAGTTGTTTTGTGGAAGGTGCCACGAATTTTCTAAAATTGTCTA
AGAGTTTTATTCTGGATGTTTTTCTGCTTTTGGATATTTTCTTGTGCTTC
TTTTTTGGAGTTCCGGTGCTTTTCGGCCGCACTAGTGCATGTTGTTGGTT
TTTACTTATGTTACTCTCGTAGACTATCATCGAATGGTCAATCCCATTAA
GCTTTCGTTCCTGAACATTGATTCTCAAAATTTCAAATTTGTTGTTGGTG
GTTGCATCAAGGAAGGTTTGGGTGTGGTGGTTGATCATGAAATGCATAAT
AATTATTTAACTAAGTTTGAATTAATACACAATATTTTTAGTCATAAATA
GCATAATTTTTTTCTTCATTATTACTAAAATTACAAATTTATCGTACAAG
GTACAAAAACGAAATAATGGAAAGTAATTAATGAGGGAAGGGGCCCAAGT
GCAAATATAGTAAAGTGGTCAAGACTATGCAGAGTCTGTACGTAACGTAA
TTTTCGTTATAACCTGAATTCGGAAATTTTGGGTATACAACTCAAACAAC
AAATAACCTCAATTCATTAATTTATCACAACCGTTTCCTCATCTCTCTCT
CTCTCTTAAGTCTCAATCTCTCTATTTTGTCCATCTCTAAAATTTCACTT
CTCTTCCCATCATTTGAGTTTTTTCTTTTATCTTATCTCTCTCACACAAA
CTTCCAAACAACTTTCTAATTTGAACAAAAGAATCTCCAAATCAAACTAT
TTTAAACCTTGCATTTCTTTGGACACTTCTATTCAACTCTACCGTACACC
GCATCTCACCGGATCTCGCTCCGTTTTTTTTTAATTTTGCAGTTTCTATC
TACCGAGTTAGTATGAGTCAACTCGGTCTCATATTACATGAATCGCTCCG
TCCTCAAAGAGAAGCAAGAACCTTACTCGGTTTATTAACGGAACAAATGG
ACGCTGCAGATTCATCAACAACGAGGAGACGTAGTCTTAAAGAACGGTTC
AGATTCACCGGTATCGGTGGTTGCTGTGGTGCCACTTGGGTTTTCCGTCC
AATTATCAGACACGAACATCACCACCAACAACAACAACGACAACGAGAGG
GAGCAAGAGAAGGAGAAACTAATGTAGAGCAAGAAGAACTACAGGTTCAA
GATCCGAATCCGGATCCGTCTAGTTCTGGCATGAATCTTGCGGCGGCATT
GGCGGCGGAGCGTCAGATGAGAGGATCGGAGGAAAGTAGCGGCGGCGAAA
GAGGGACGCCGTGGAGAGTTTCGTTAATGAAACTGTTGGAGGAAACGGAA
GTGGAAAGTGAGAGTACCACGACGGTTATGGAGGGGAGTGATTCAGTGTG
CTGCGTGTGCATGGGAAGGAAGAAAGGTGCAGCGTTCATACCGTGTGGAC
ACACTTTTTGTAGAGTGTGTTCAAGGGAACTGTGGTTGAATCGAGGGAAC
TGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTAGACATTTTCTGA back to topCoding sequence (CDS) from alignment at chr4LG4:5371480..5373677+ >Psat4g005200.1_Ps_Cameor_v1a ID=Psat4g005200.1_Ps_Cameor_v1a; Name=Psat4g005200.1; organism=Pisum sativum; type=CDS; length=1380bp; location=Sequence derived from: chr4LG4:5371480..5373677+ (Pisum sativum
ATGGTTGAGGTGGGGTCTGTGCCGTGCTGTTCAGATGGTTGAGGTGGGGT
CTGTGCCGTGCTGTTCAGTTTCTATCTACCGAGTTAGTATGAGTCAACTC
GGTCTCATATTACATGAATCGCTCCGTCCTCAAAGAGAAGCAAGAACCTT
ACTCGGTTTATTAACGGAACAAATGGACGCTGCAGATTCATCAACAACGA
GGAGACGTAGTCTTAAAGAACGGTTCAGATTCACCGGTATCGGTGGTTGC
TGTGGTGCCACTTGGGTTTTCCGTCCAATTATCAGACACGAACATCACCA
CCAACAACAACAACGACAACGAGAGGGAGCAAGAGAAGGAGAAACTAATG
TAGAGCAAGAAGAACTACAGGTTCAAGATCCGAATCCGGATCCGTCTAGT
TCTGGCATGAATCTTGCGGCGGCATTGGCGGCGGAGCGTCAGATGAGAGG
ATCGGAGGAAAGTAGCGGCGGCGAAAGAGGGACGCCGTGGAGAGTTTCGT
TAATGAAACTGTTGGAGGAAACGGAAGTGGAAAGTGAGAGTACCACGACG
GTTATGGAGGGGAGTGATTCAGTGTGCTGCGTGTGCATGGGAAGGAAGAA
AGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGTAGAGTGTGTTCAA
GGGAACTGTGGTTGAATCGAGGGAACTGTCCCCTTTGTAATCGTTCTATT
CTCGAGATTCTAGACATTTTCTGATTTCTATCTACCGAGTTAGTATGAGT
CAACTCGGTCTCATATTACATGAATCGCTCCGTCCTCAAAGAGAAGCAAG
AACCTTACTCGGTTTATTAACGGAACAAATGGACGCTGCAGATTCATCAA
CAACGAGGAGACGTAGTCTTAAAGAACGGTTCAGATTCACCGGTATCGGT
GGTTGCTGTGGTGCCACTTGGGTTTTCCGTCCAATTATCAGACACGAACA
TCACCACCAACAACAACAACGACAACGAGAGGGAGCAAGAGAAGGAGAAA
CTAATGTAGAGCAAGAAGAACTACAGGTTCAAGATCCGAATCCGGATCCG
TCTAGTTCTGGCATGAATCTTGCGGCGGCATTGGCGGCGGAGCGTCAGAT
GAGAGGATCGGAGGAAAGTAGCGGCGGCGAAAGAGGGACGCCGTGGAGAG
TTTCGTTAATGAAACTGTTGGAGGAAACGGAAGTGGAAAGTGAGAGTACC
ACGACGGTTATGGAGGGGAGTGATTCAGTGTGCTGCGTGTGCATGGGAAG
GAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGTAGAGTGT
GTTCAAGGGAACTGTGGTTGAATCGAGGGAACTGTCCCCTTTGTAATCGT
TCTATTCTCGAGATTCTAGACATTTTCTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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