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Transcript Overview
| Name | Psat5g021320.1 |
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| Unique Name | Psat5g021320.1_Ps_Cameor_v1a |
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| Type | mRNA |
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| Organism | Pisum sativum (pea) |
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| Sequence length | 643 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat5g021320.1 | Psat5g021320.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat5g021320.1_Ps_Cameor_v1a | Psat5g021320.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat5g021320.1.five_prime_utr1 | Psat5g021320.1.five_prime_utr1_Ps_Cameor_v1a | Pisum sativum | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat5g021320.1.exon1 | Psat5g021320.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat5g021320.1.cds1 | Psat5g021320.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
Homology
BLAST of Psat5g021320.1 vs. DB:Swiss
Match: LFS_ALLCE (Lachrymatory-factor synthase OS=Allium cepa OX=4679 GN=LFS PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 3.021e-14 Identity = 43/138 (31.16%), Postives = 65/138 (47.10%), Query Frame = 1
Query: 13 NKAKKWEGKAIVKVRGTEEEIVWSVLQDFCNLHKWLP-IDTCYKFEGVDGQPGLVRYCASTKKGADENSEAVVKWFKEKLLTIDHVQRCLSYEIVDNNMGFKNYVAIMKVLPLKITDDDDERVGCMIEWECVCDPVEG 423
N A+KW GK + T+ E W++L+DF NLHK +P + C EG G VRY +E W KEKL+ +D+ SY + G+++Y A M+++ + E G +W C +EG
Sbjct: 16 NGARKWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEEF-----WAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIV------EGPEHKGSRFDWSFQCKYIEG 142
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR023393 | START-like domain superfamily | GENE3D | 3.30.530.20 | | coord: 3..159
e-value: 6.5E-44
score: 152.1 |
| IPR019587 | Polyketide cyclase/dehydrase | PFAM | PF10604 | Polyketide_cyc2 | coord: 24..152
e-value: 1.6E-17
score: 64.1 |
| None | No IPR available | CDD | cd07821 | PYR_PYL_RCAR_like | coord: 24..158
e-value: 1.27698E-27
score: 98.1651 |
| None | No IPR available | SUPERFAMILY | 55961 | Bet v1-like | coord: 24..158 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat5g021320.1_Ps_Cameor_v1a ID=Psat5g021320.1_Ps_Cameor_v1a; Name=Psat5g021320.1; organism=Pisum sativum; type=mRNA; length=643bp
ATTATTTTGAATATTGAAATTTGATAGAGGGTGGTTGCTTTCTTAGAATA
CTGCATGGGTTGACCAATATATGCTTAGATATGTGTATATATAGATATCA
AGTCCCTCACCATTTTTCTCAACAAAAAAGATCTCATCAAGCTATTGAGT
AAATCTACTAGAAAAATGGGAGAGGAAAACAAGGCGAAAAAATGGGAAGG
TAAAGCGATTGTTAAGGTAAGAGGCACTGAGGAGGAAATAGTATGGAGTG
TGTTACAAGATTTTTGTAACCTACACAAATGGCTACCAATTGATACATGT
TATAAGTTCGAAGGAGTTGATGGTCAGCCTGGTCTTGTTCGATATTGTGC
TTCAACCAAAAAGGGTGCTGATGAAAATTCAGAGGCAGTTGTGAAATGGT
TCAAAGAGAAGCTGTTGACAATTGATCATGTACAACGTTGTTTGTCCTAT
GAAATTGTTGATAACAACATGGGATTTAAGAATTACGTGGCGATAATGAA
AGTATTGCCGCTGAAAATCACTGATGATGATGATGAACGTGTAGGGTGTA
TGATTGAATGGGAGTGTGTTTGTGATCCAGTGGAAGGATGGAGTTTGCAA
AATTTGCACTCTTACATTGGAAACTTTCTTAGGTGTATGGCCA back to topprotein sequence of Psat5g021320.1_Ps_Cameor_v1a >Psat5g021320.1_Ps_Cameor_v1a ID=Psat5g021320.1_Ps_Cameor_v1a; Name=Psat5g021320.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=159bp
MGEENKAKKWEGKAIVKVRGTEEEIVWSVLQDFCNLHKWLPIDTCYKFEG
VDGQPGLVRYCASTKKGADENSEAVVKWFKEKLLTIDHVQRCLSYEIVDN
NMGFKNYVAIMKVLPLKITDDDDERVGCMIEWECVCDPVEGWSLQNLHSY
IGNFLRCMA back to topmRNA from alignment at chr5LG3:39888788..39889430- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Psat5g021320.1_Ps_Cameor_v1a ID=Psat5g021320.1_Ps_Cameor_v1a; Name=Psat5g021320.1; organism=Pisum sativum; type=mRNA; length=643bp; location=Sequence derived from: chr5LG3:39888788..39889430- (Pisum sativum
ATTATTTTGAATATTGAAATTTGATAGAGGGTGGTTGCTTTCTTAGAATA
CTGCATGGGTTGACCAATATATGCTTAGATATGTGTATATATAGATATCA
AGTCCCTCACCATTTTTCTCAACAAAAAAGATCTCATCAAGCTATTGAGT
AAATCTACTAGAAAAATGGGAGAGGAAAACAAGGCGAAAAAATGGGAAGG
TAAAGCGATTGTTAAGGTAAGAGGCACTGAGGAGGAAATAGTATGGAGTG
TGTTACAAGATTTTTGTAACCTACACAAATGGCTACCAATTGATACATGT
TATAAGTTCGAAGGAGTTGATGGTCAGCCTGGTCTTGTTCGATATTGTGC
TTCAACCAAAAAGGGTGCTGATGAAAATTCAGAGGCAGTTGTGAAATGGT
TCAAAGAGAAGCTGTTGACAATTGATCATGTACAACGTTGTTTGTCCTAT
GAAATTGTTGATAACAACATGGGATTTAAGAATTACGTGGCGATAATGAA
AGTATTGCCGCTGAAAATCACTGATGATGATGATGAACGTGTAGGGTGTA
TGATTGAATGGGAGTGTGTTTGTGATCCAGTGGAAGGATGGAGTTTGCAA
AATTTGCACTCTTACATTGGAAACTTTCTTAGGTGTATGGCCA back to topCoding sequence (CDS) from alignment at chr5LG3:39888788..39889430- >Psat5g021320.1_Ps_Cameor_v1a ID=Psat5g021320.1_Ps_Cameor_v1a; Name=Psat5g021320.1; organism=Pisum sativum; type=CDS; length=956bp; location=Sequence derived from: chr5LG3:39888788..39889430- (Pisum sativum
ATGGGAGAGGAAAACAAGGCGAAAAAATGGGAAGGTAAAGCGATTGTTAA
GGTAAGAGGCACTGAGGAGGAAATAGTATGGAGTGTGTTACAAGATTTTT
GTAACCTACACAAATGGCTACCAATTGATACATGTTATAAGTTCGAAGGA
GTTGATGGTCAGCCTGGTCTTGTTCGATATTGTGCTTCAACCAAAAAGGG
TGCTGATGAAAATTCAGAGGCAGTTGTGAAATGGTTCAAAGAGAAGCTGT
TGACAATTGATCATGTACAACGTTGTTTGTCCTATGAAATTGTTGATAAC
AACATGGGATTTAAGAATTACGTGGCGATAATGAAAGTATTGCCGCTGAA
AATCACTGATGATGATGATGAACGTGTAGGGTGTATGATTGAATGGGAGT
GTGTTTGTGATCCAGTGGAAGGATGGAGTTTGCAAAATTTGCACTCTTAC
ATTGGAAACTTTCTTAGGTGTATGGCCAATGGGAGAGGAAAACAAGGCGA
AAAAATGGGAAGGTAAAGCGATTGTTAAGGTAAGAGGCACTGAGGAGGAA
ATAGTATGGAGTGTGTTACAAGATTTTTGTAACCTACACAAATGGCTACC
AATTGATACATGTTATAAGTTCGAAGGAGTTGATGGTCAGCCTGGTCTTG
TTCGATATTGTGCTTCAACCAAAAAGGGTGCTGATGAAAATTCAGAGGCA
GTTGTGAAATGGTTCAAAGAGAAGCTGTTGACAATTGATCATGTACAACG
TTGTTTGTCCTATGAAATTGTTGATAACAACATGGGATTTAAGAATTACG
TGGCGATAATGAAAGTATTGCCGCTGAAAATCACTGATGATGATGATGAA
CGTGTAGGGTGTATGATTGAATGGGAGTGTGTTTGTGATCCAGTGGAAGG
ATGGAGTTTGCAAAATTTGCACTCTTACATTGGAAACTTTCTTAGGTGTA
TGGCCA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR023393 | START-like_dom_sf |
| IPR019587 | Polyketide_cyclase/dehydratase |
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