Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat5g021320.1 | Psat5g021320.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat5g021320.1_Ps_Cameor_v1a | Psat5g021320.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat5g021320.1.five_prime_utr1 | Psat5g021320.1.five_prime_utr1_Ps_Cameor_v1a | Pisum sativum | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat5g021320.1.exon1 | Psat5g021320.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat5g021320.1.cds1 | Psat5g021320.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
Homology
BLAST of Psat5g021320.1 vs. DB:Swiss
Match:
LFS_ALLCE (Lachrymatory-factor synthase OS=Allium cepa OX=4679 GN=LFS PE=1 SV=1)
HSP 1 Score: 69.707 bits (169), Expect = 3.021e-14
Identity = 43/138 (31.16%), Postives = 65/138 (47.10%), Query Frame = 1
Query: 13 NKAKKWEGKAIVKVRGTEEEIVWSVLQDFCNLHKWLP-IDTCYKFEGVDGQPGLVRYCASTKKGADENSEAVVKWFKEKLLTIDHVQRCLSYEIVDNNMGFKNYVAIMKVLPLKITDDDDERVGCMIEWECVCDPVEG 423
N A+KW GK + T+ E W++L+DF NLHK +P + C EG G VRY +E W KEKL+ +D+ SY + G+++Y A M+++ + E G +W C +EG
Sbjct: 16 NGARKWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEEF-----WAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIV------EGPEHKGSRFDWSFQCKYIEG 142
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Psat5g021320.1_Ps_Cameor_v1a ID=Psat5g021320.1_Ps_Cameor_v1a; Name=Psat5g021320.1; organism=Pisum sativum; type=mRNA; length=643bp
ATTATTTTGAATATTGAAATTTGATAGAGGGTGGTTGCTTTCTTAGAATA
CTGCATGGGTTGACCAATATATGCTTAGATATGTGTATATATAGATATCA
AGTCCCTCACCATTTTTCTCAACAAAAAAGATCTCATCAAGCTATTGAGT
AAATCTACTAGAAAAATGGGAGAGGAAAACAAGGCGAAAAAATGGGAAGG
TAAAGCGATTGTTAAGGTAAGAGGCACTGAGGAGGAAATAGTATGGAGTG
TGTTACAAGATTTTTGTAACCTACACAAATGGCTACCAATTGATACATGT
TATAAGTTCGAAGGAGTTGATGGTCAGCCTGGTCTTGTTCGATATTGTGC
TTCAACCAAAAAGGGTGCTGATGAAAATTCAGAGGCAGTTGTGAAATGGT
TCAAAGAGAAGCTGTTGACAATTGATCATGTACAACGTTGTTTGTCCTAT
GAAATTGTTGATAACAACATGGGATTTAAGAATTACGTGGCGATAATGAA
AGTATTGCCGCTGAAAATCACTGATGATGATGATGAACGTGTAGGGTGTA
TGATTGAATGGGAGTGTGTTTGTGATCCAGTGGAAGGATGGAGTTTGCAA
AATTTGCACTCTTACATTGGAAACTTTCTTAGGTGTATGGCCA
back to topprotein sequence of Psat5g021320.1_Ps_Cameor_v1a
>Psat5g021320.1_Ps_Cameor_v1a ID=Psat5g021320.1_Ps_Cameor_v1a; Name=Psat5g021320.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=159bp
MGEENKAKKWEGKAIVKVRGTEEEIVWSVLQDFCNLHKWLPIDTCYKFEG
VDGQPGLVRYCASTKKGADENSEAVVKWFKEKLLTIDHVQRCLSYEIVDN
NMGFKNYVAIMKVLPLKITDDDDERVGCMIEWECVCDPVEGWSLQNLHSY
IGNFLRCMA
back to topmRNA from alignment at chr5LG3:39888788..39889430-
Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat5g021320.1_Ps_Cameor_v1a ID=Psat5g021320.1_Ps_Cameor_v1a; Name=Psat5g021320.1; organism=Pisum sativum; type=mRNA; length=643bp; location=Sequence derived from: chr5LG3:39888788..39889430- (Pisum sativum
ATTATTTTGAATATTGAAATTTGATAGAGGGTGGTTGCTTTCTTAGAATA
CTGCATGGGTTGACCAATATATGCTTAGATATGTGTATATATAGATATCA
AGTCCCTCACCATTTTTCTCAACAAAAAAGATCTCATCAAGCTATTGAGT
AAATCTACTAGAAAAATGGGAGAGGAAAACAAGGCGAAAAAATGGGAAGG
TAAAGCGATTGTTAAGGTAAGAGGCACTGAGGAGGAAATAGTATGGAGTG
TGTTACAAGATTTTTGTAACCTACACAAATGGCTACCAATTGATACATGT
TATAAGTTCGAAGGAGTTGATGGTCAGCCTGGTCTTGTTCGATATTGTGC
TTCAACCAAAAAGGGTGCTGATGAAAATTCAGAGGCAGTTGTGAAATGGT
TCAAAGAGAAGCTGTTGACAATTGATCATGTACAACGTTGTTTGTCCTAT
GAAATTGTTGATAACAACATGGGATTTAAGAATTACGTGGCGATAATGAA
AGTATTGCCGCTGAAAATCACTGATGATGATGATGAACGTGTAGGGTGTA
TGATTGAATGGGAGTGTGTTTGTGATCCAGTGGAAGGATGGAGTTTGCAA
AATTTGCACTCTTACATTGGAAACTTTCTTAGGTGTATGGCCA
back to topCoding sequence (CDS) from alignment at chr5LG3:39888788..39889430-
>Psat5g021320.1_Ps_Cameor_v1a ID=Psat5g021320.1_Ps_Cameor_v1a; Name=Psat5g021320.1; organism=Pisum sativum; type=CDS; length=956bp; location=Sequence derived from: chr5LG3:39888788..39889430- (Pisum sativum
ATGGGAGAGGAAAACAAGGCGAAAAAATGGGAAGGTAAAGCGATTGTTAA
GGTAAGAGGCACTGAGGAGGAAATAGTATGGAGTGTGTTACAAGATTTTT
GTAACCTACACAAATGGCTACCAATTGATACATGTTATAAGTTCGAAGGA
GTTGATGGTCAGCCTGGTCTTGTTCGATATTGTGCTTCAACCAAAAAGGG
TGCTGATGAAAATTCAGAGGCAGTTGTGAAATGGTTCAAAGAGAAGCTGT
TGACAATTGATCATGTACAACGTTGTTTGTCCTATGAAATTGTTGATAAC
AACATGGGATTTAAGAATTACGTGGCGATAATGAAAGTATTGCCGCTGAA
AATCACTGATGATGATGATGAACGTGTAGGGTGTATGATTGAATGGGAGT
GTGTTTGTGATCCAGTGGAAGGATGGAGTTTGCAAAATTTGCACTCTTAC
ATTGGAAACTTTCTTAGGTGTATGGCCAATGGGAGAGGAAAACAAGGCGA
AAAAATGGGAAGGTAAAGCGATTGTTAAGGTAAGAGGCACTGAGGAGGAA
ATAGTATGGAGTGTGTTACAAGATTTTTGTAACCTACACAAATGGCTACC
AATTGATACATGTTATAAGTTCGAAGGAGTTGATGGTCAGCCTGGTCTTG
TTCGATATTGTGCTTCAACCAAAAAGGGTGCTGATGAAAATTCAGAGGCA
GTTGTGAAATGGTTCAAAGAGAAGCTGTTGACAATTGATCATGTACAACG
TTGTTTGTCCTATGAAATTGTTGATAACAACATGGGATTTAAGAATTACG
TGGCGATAATGAAAGTATTGCCGCTGAAAATCACTGATGATGATGATGAA
CGTGTAGGGTGTATGATTGAATGGGAGTGTGTTTGTGATCCAGTGGAAGG
ATGGAGTTTGCAAAATTTGCACTCTTACATTGGAAACTTTCTTAGGTGTA
TGGCCA
back to top
