Psat5g021560.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GAT12_ARATH (GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 8.420e-73 Identity = 161/327 (49.24%), Postives = 190/327 (58.10%), Query Frame = 1
Query: 118 FIVEDLF-DFSNDDDAAIGDPAFDSPPTISDNSPPLETNVSSNFFMDN--SCQNSV-DG-PFSGELSVPYDDLA-ELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASKT----HDESNSILHPPQVSVPAKARSKRPRGPPCNWTSRLLV--------------------LSSPT------IATTXXXXXXXXXXXXXXXXXXXHGDGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMVKXXXXXXXXXXXXXXXNIMFDGPSNGDDYLIHQHVGPDFTHLM 990
F V+DL DFSNDDD + ++D++ SSNF + S V DG FSG+L +P DDLA ELEWLS +ES S ED+ KLELISG K+ D S T + S+S + VSVPAKARSKR R CNW SR L+ LS PT ++ +K + G E R+CLHCATDKTPQWRTGP+GPKTLCNACGVRYKSGRLVPEYRPAASPTFVL KHSNSHRKV ELRRQKEM + H + ++FD S+GDDYLIH +VGPDF L+
Sbjct: 14 FAVDDLLVDFSNDDD--------EENDVVADSTTTTTITDSSNFSAADLPSFHGDVQDGTSFSGDLCIPSDDLADELEWLSNIVDESLSPEDVHKLELISGFKSRPDPKSDTGSPENPNSSSPIFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQHLSPPTSPPLLMAPLGKKQAVDGGHRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEMSRAHHEFIHHHHGTDTA-MIFDVSSDGDDYLIHHNVGPDFRQLI 331
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GATA9_ARATH (GATA transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=GATA9 PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.129e-72 Identity = 147/308 (47.73%), Postives = 180/308 (58.44%), Query Frame = 1
Query: 112 DHFIVEDLFDFSNDDDAAIGDPAFDSPPTISDNSPPLETNVSSNFFMDNSCQNSV--DGPFSGELSVPYDDLAELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASK-TH--------DESNSILHPPQVSVPAKARSKRPRGPPCNWTSRLLVLSSPTIATTXXXXXXXXXXXXXXXXXXXHGD-GEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMVKXXXXXXXXXXXXXXXNIMFDGPSNGDDYLIH---QHVGPDFTHLM 990
D F+V+DL DFSNDD + D N+ P + +S+ D+S +S+ DG +L +P DD+AELEWLS F EESF+ ED KL L SG+K S TH D + V+VPAKARSKR R W SRLL L+ + + D G+ G GR+CLHCAT+KTPQWRTGP+GPKTLCNACGVRYKSGRLVPEYRPA+SPTFV+ +HSNSHRKV ELRRQKEM L N++ D SNG+D+L+H HV PDF HL+
Sbjct: 16 DSFVVDDLLDFSNDD-GEVDDGL---------NTLPDSSTLSTGTLTDSSNSSSLFTDGTGFSDLYIPNDDIAELEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTLTHLIKPEPELDHQFIDIDESNVAVPAKARSKRSRSAASTWASRLLSLADSDETNPKKKQRRVKEQDFAGDMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM-----RDEHLLSQLRCENLLMDIRSNGEDFLMHNNTNHVAPDFRHLI 308
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 5.828e-43 Identity = 89/190 (46.84%), Postives = 110/190 (57.89%), Query Frame = 1
Query: 286 FSGELSVPYDDLAELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASKTHDESNSILHPPQVSVPAKARSKRPRGPPCNWTSRLLVLSSPTIATTXXXXXXXXXXXXXXXXXXXHGDGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKE 855
F+ +L VP DD A LEWLS+F +D+ S ++ P++S K RS+R R P + +S + + ++ S DG R+C HCA++KTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPA+SPTFVLT+HSNSHRKV ELRRQKE
Sbjct: 63 FTHDLCVPSDDAAHLEWLSRFV---------------------DDSFSDFPANPLTMTVRPEISFTGKPRSRRSRAPAPSVAGTWAPMSESELCHSVAKPKPKKVYNAESVT----ADG-ARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GATA2_ARATH (GATA transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=GATA2 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 7.058e-41 Identity = 88/204 (43.14%), Postives = 112/204 (54.90%), Query Frame = 1
Query: 286 FSGELSVPYDDLAELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASKTHDESNSILHPPQVSVPAKARSKRPRGPP---CNWTSRLLVLSSPTIATTXXXXXXXXXXXXXXXXXXXHGD--------GEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMVK 864
F ++ VP DD A LEWLS+F + + + A+ + T ++ + S P K RSKR R P W+ L + + + H G R+C HCA++KTPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPA+SPTFVLT+HSNSHRKV ELRRQKE+++
Sbjct: 65 FLHDICVPSDDAAHLEWLSQFVD-----------DSFADFPANPLGGTMTSVKT-------ETSFPGKPRSKRSRAPAPFAGTWSPMPLESEHQQLHSAAKFKPKKEQSGGGGGGGGRHQSSSSETTEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEVMR 250
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana OX=3702 GN=GATA1 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 7.837e-32 Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 646 GRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKE 855
GRKC HC +KTPQWR GP GPKTLCNACGVRYKSGRLVPEYRPA SPTF HSNSHRK+ E+R+Q +
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQ 262
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GAT11_ARATH (GATA transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=GATA11 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.728e-31 Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 1
Query: 631 HGDGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQ 849
+ DG RKC HC T KTPQWR GP GPKTLCNACGVR++SGRLVPEYRPA+SPTF+ HSNSHRK+ E+RR+
Sbjct: 214 NSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRK 286
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GATA7_ARATH (GATA transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=GATA7 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 7.318e-31 Identity = 96/256 (37.50%), Postives = 120/256 (46.88%), Query Frame = 1
Query: 118 FIVEDLFDFSNDDDAAIGDPAFDSPPTISDNSPPLETNVSSNFFMDNSCQNSVDGPFSGELSVPYD----DLAELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASKTHDESNSILHP------PQVSVPAKARSKRPRGPPCNWTSRLLVLSSPTIATTXXXXXXXXXXXXXXXXXXXHGDGEGRKCL-HCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQK 852
F V+DL D SN D + S +S E F S Q++ P LS P D DL +LEWLS F D+ S+++ S+ ++P + VP K RSKR R W+ + SP ++T +R K + + R+C HC KTPQWR GPLG KTLCNACGVR+KSGRL+PEYRPA SPTF HSNSHRKV ELR K
Sbjct: 11 FSVDDLLDLSNADTS-----------LESSSSQRKEDEQEREKFKSFSDQSTRLSPPEDLLSFPGDAPVGDLEDLEWLSNFV---------------------EDSFSESYISSDFPVNPVASVEVRRQCVPVKPRSKRRRTNGRIWS---MESPSPLLSTAVARRKKRGRQKVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK 231
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GATA8_ARATH (GATA transcription factor 8 OS=Arabidopsis thaliana OX=3702 GN=GATA8 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.183e-30 Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 649 RKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQK 852
RKC+HC KTPQWR GP+GPKTLCNACGVRYKSGRL PEYRPAASPTF HSNSH+KV E+R ++
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMRNKR 296
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GATA3_ARATH (GATA transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=GATA3 PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.190e-29 Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 649 RKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEM 858
R+C HC T+ TPQWRTGP+GPKTLCNACGVR+KSGRL PEYRPA SPTF HSN HRKV ELR+ KE+
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKEL 249
BLAST of Psat5g021560.1 vs. DB:Swiss
Match: GATA5_ARATH (GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.432e-29 Identity = 52/69 (75.36%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 649 RKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKE 855
RKC HC KTPQWR GP+G KTLCNACGVRYKSGRL+PEYRPA SPTF HSN HRKV E+RR+KE
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317 The following BLAST results are available for this feature:
BLAST of Psat5g021560.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat5g021560.1_Ps_Cameor_v1a ID=Psat5g021560.1_Ps_Cameor_v1a; Name=Psat5g021560.1; organism=Pisum sativum; type=mRNA; length=4301bpback to top protein sequence of Psat5g021560.1_Ps_Cameor_v1a >Psat5g021560.1_Ps_Cameor_v1a ID=Psat5g021560.1_Ps_Cameor_v1a; Name=Psat5g021560.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=331bpback to top mRNA from alignment at chr5LG3:40387683..40391983+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat5g021560.1_Ps_Cameor_v1a ID=Psat5g021560.1_Ps_Cameor_v1a; Name=Psat5g021560.1; organism=Pisum sativum; type=mRNA; length=4301bp; location=Sequence derived from: chr5LG3:40387683..40391983+ (Pisum sativumback to top Coding sequence (CDS) from alignment at chr5LG3:40387683..40391983+ >Psat5g021560.1_Ps_Cameor_v1a ID=Psat5g021560.1_Ps_Cameor_v1a; Name=Psat5g021560.1; organism=Pisum sativum; type=CDS; length=1986bp; location=Sequence derived from: chr5LG3:40387683..40391983+ (Pisum sativumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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