Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Psat5g021560.1 Psat5g021560.1_Ps_Cameor_v1a-protein Pisum sativum polypeptide Psat5g021560.1_Ps_Cameor_v1a Psat5g021560.1_Ps_Cameor_v1a Pisum sativum polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat5g021560.1.five_prime_utr1 Psat5g021560.1.five_prime_utr1_Ps_Cameor_v1a Pisum sativum five_prime_UTR
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat5g021560.1.exon1 Psat5g021560.1.exon1_Ps_Cameor_v1a Pisum sativum exon Psat5g021560.1.exon2 Psat5g021560.1.exon2_Ps_Cameor_v1a Pisum sativum exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat5g021560.1.cds1 Psat5g021560.1.cds1_Ps_Cameor_v1a Pisum sativum CDS Psat5g021560.1.cds2 Psat5g021560.1.cds2_Ps_Cameor_v1a Pisum sativum CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat5g021560.1.three_prime_utr1 Psat5g021560.1.three_prime_utr1_Ps_Cameor_v1a Pisum sativum three_prime_UTR
Homology
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GAT12_ARATH (GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1)
HSP 1 Score: 231.491 bits (589), Expect = 8.420e-73
Identity = 161/327 (49.24%), Postives = 190/327 (58.10%), Query Frame = 1
Query: 118 FIVEDLF-DFSNDDDAAIGDPAFDSPPTISDNSPPLETNVSSNFFMDN--SCQNSV-DG-PFSGELSVPYDDLA-ELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASKT----HDESNSILHPPQVSVPAKARSKRPRGPPCNWTSRLLV--------------------LSSPT------IATTXXXXXXXXXXXXXXXXXXXHGDGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMVKXXXXXXXXXXXXXXXNIMFDGPSNGDDYLIHQHVGPDFTHLM 990
F V+DL DFSNDDD + ++D++ SSNF + S V DG FSG+L +P DDLA ELEWLS +ES S ED+ KLELISG K+ D S T + S+S + VSVPAKARSKR R CNW SR L+ LS PT ++ +K + G E R+CLHCATDKTPQWRTGP+GPKTLCNACGVRYKSGRLVPEYRPAASPTFVL KHSNSHRKV ELRRQKEM + H + ++FD S+GDDYLIH +VGPDF L+
Sbjct: 14 FAVDDLLVDFSNDDD--------EENDVVADSTTTTTITDSSNFSAADLPSFHGDVQDGTSFSGDLCIPSDDLADELEWLSNIVDESLSPEDVHKLELISGFKSRPDPKSDTGSPENPNSSSPIFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQHLSPPTSPPLLMAPLGKKQAVDGGHRRKKDVSSPESGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEMSRAHHEFIHHHHGTDTA-MIFDVSSDGDDYLIHHNVGPDFRQLI 331
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GATA9_ARATH (GATA transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=GATA9 PE=2 SV=1)
HSP 1 Score: 230.335 bits (586), Expect = 1.129e-72
Identity = 147/308 (47.73%), Postives = 180/308 (58.44%), Query Frame = 1
Query: 112 DHFIVEDLFDFSNDDDAAIGDPAFDSPPTISDNSPPLETNVSSNFFMDNSCQNSV--DGPFSGELSVPYDDLAELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASK-TH--------DESNSILHPPQVSVPAKARSKRPRGPPCNWTSRLLVLSSPTIATTXXXXXXXXXXXXXXXXXXXHGD-GEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMVKXXXXXXXXXXXXXXXNIMFDGPSNGDDYLIH---QHVGPDFTHLM 990
D F+V+DL DFSNDD + D N+ P + +S+ D+S +S+ DG +L +P DD+AELEWLS F EESF+ ED KL L SG+K S TH D + V+VPAKARSKR R W SRLL L+ + + D G+ G GR+CLHCAT+KTPQWRTGP+GPKTLCNACGVRYKSGRLVPEYRPA+SPTFV+ +HSNSHRKV ELRRQKEM L N++ D SNG+D+L+H HV PDF HL+
Sbjct: 16 DSFVVDDLLDFSNDD-GEVDDGL---------NTLPDSSTLSTGTLTDSSNSSSLFTDGTGFSDLYIPNDDIAELEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTLTHLIKPEPELDHQFIDIDESNVAVPAKARSKRSRSAASTWASRLLSLADSDETNPKKKQRRVKEQDFAGDMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM-----RDEHLLSQLRCENLLMDIRSNGEDFLMHNNTNHVAPDFRHLI 308
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GATA4_ARATH (GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1)
HSP 1 Score: 151.754 bits (382), Expect = 5.828e-43
Identity = 89/190 (46.84%), Postives = 110/190 (57.89%), Query Frame = 1
Query: 286 FSGELSVPYDDLAELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASKTHDESNSILHPPQVSVPAKARSKRPRGPPCNWTSRLLVLSSPTIATTXXXXXXXXXXXXXXXXXXXHGDGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKE 855
F+ +L VP DD A LEWLS+F +D+ S ++ P++S K RS+R R P + +S + + ++ S DG R+C HCA++KTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPA+SPTFVLT+HSNSHRKV ELRRQKE
Sbjct: 63 FTHDLCVPSDDAAHLEWLSRFV---------------------DDSFSDFPANPLTMTVRPEISFTGKPRSRRSRAPAPSVAGTWAPMSESELCHSVAKPKPKKVYNAESVT----ADG-ARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKE 226
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GATA2_ARATH (GATA transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=GATA2 PE=2 SV=1)
HSP 1 Score: 146.747 bits (369), Expect = 7.058e-41
Identity = 88/204 (43.14%), Postives = 112/204 (54.90%), Query Frame = 1
Query: 286 FSGELSVPYDDLAELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASKTHDESNSILHPPQVSVPAKARSKRPRGPP---CNWTSRLLVLSSPTIATTXXXXXXXXXXXXXXXXXXXHGD--------GEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMVK 864
F ++ VP DD A LEWLS+F + + + A+ + T ++ + S P K RSKR R P W+ L + + + H G R+C HCA++KTPQWRTGPLGPKTLCNACGVR+KSGRLVPEYRPA+SPTFVLT+HSNSHRKV ELRRQKE+++
Sbjct: 65 FLHDICVPSDDAAHLEWLSQFVD-----------DSFADFPANPLGGTMTSVKT-------ETSFPGKPRSKRSRAPAPFAGTWSPMPLESEHQQLHSAAKFKPKKEQSGGGGGGGGRHQSSSSETTEGGGMRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEVMR 250
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GATA1_ARATH (GATA transcription factor 1 OS=Arabidopsis thaliana OX=3702 GN=GATA1 PE=2 SV=2)
HSP 1 Score: 123.25 bits (308), Expect = 7.837e-32
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 646 GRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKE 855
GRKC HC +KTPQWR GP GPKTLCNACGVRYKSGRLVPEYRPA SPTF HSNSHRK+ E+R+Q +
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRKIVEMRKQYQ 262
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GAT11_ARATH (GATA transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=GATA11 PE=2 SV=1)
HSP 1 Score: 122.865 bits (307), Expect = 2.728e-31
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 1
Query: 631 HGDGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQ 849
+ DG RKC HC T KTPQWR GP GPKTLCNACGVR++SGRLVPEYRPA+SPTF+ HSNSHRK+ E+RR+
Sbjct: 214 NSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRK 286
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GATA7_ARATH (GATA transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=GATA7 PE=2 SV=1)
HSP 1 Score: 119.783 bits (299), Expect = 7.318e-31
Identity = 96/256 (37.50%), Postives = 120/256 (46.88%), Query Frame = 1
Query: 118 FIVEDLFDFSNDDDAAIGDPAFDSPPTISDNSPPLETNVSSNFFMDNSCQNSVDGPFSGELSVPYD----DLAELEWLSKXXXXXXXXXXLQKLELISGMKASNDAASKTHDESNSILHP------PQVSVPAKARSKRPRGPPCNWTSRLLVLSSPTIATTXXXXXXXXXXXXXXXXXXXHGDGEGRKCL-HCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQK 852
F V+DL D SN D + S +S E F S Q++ P LS P D DL +LEWLS F D+ S+++ S+ ++P + VP K RSKR R W+ + SP ++T +R K + + R+C HC KTPQWR GPLG KTLCNACGVR+KSGRL+PEYRPA SPTF HSNSHRKV ELR K
Sbjct: 11 FSVDDLLDLSNADTS-----------LESSSSQRKEDEQEREKFKSFSDQSTRLSPPEDLLSFPGDAPVGDLEDLEWLSNFV---------------------EDSFSESYISSDFPVNPVASVEVRRQCVPVKPRSKRRRTNGRIWS---MESPSPLLSTAVARRKKRGRQKVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK 231
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GATA8_ARATH (GATA transcription factor 8 OS=Arabidopsis thaliana OX=3702 GN=GATA8 PE=2 SV=1)
HSP 1 Score: 120.553 bits (301), Expect = 2.183e-30
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 649 RKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQK 852
RKC+HC KTPQWR GP+GPKTLCNACGVRYKSGRL PEYRPAASPTF HSNSH+KV E+R ++
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMRNKR 296
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GATA3_ARATH (GATA transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=GATA3 PE=2 SV=2)
HSP 1 Score: 117.472 bits (293), Expect = 1.190e-29
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 649 RKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEM 858
R+C HC T+ TPQWRTGP+GPKTLCNACGVR+KSGRL PEYRPA SPTF HSN HRKV ELR+ KE+
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRKVLELRKSKEL 249
BLAST of Psat5g021560.1 vs. DB:Swiss
Match:
GATA5_ARATH (GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1)
HSP 1 Score: 119.013 bits (297), Expect = 1.432e-29
Identity = 52/69 (75.36%), Postives = 56/69 (81.16%), Query Frame = 1
Query: 649 RKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKE 855
RKC HC KTPQWR GP+G KTLCNACGVRYKSGRL+PEYRPA SPTF HSN HRKV E+RR+KE
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317
The following BLAST results are available for this feature:
BLAST of Psat5g021560.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (
BLAST: P. sativum Cameor genome v1a vs. Swissprot )
Total hits: 10
500 1000 1500 2000 2500 3000 3500 4000 Expect = 8.42e-73 / Id = 49.24 Expect = 1.13e-72 / Id = 47.73 Expect = 5.83e-43 / Id = 46.84 Expect = 7.06e-41 / Id = 43.14 Expect = 7.84e-32 / Id = 75.71 Expect = 2.73e-31 / Id = 72.60 Expect = 7.32e-31 / Id = 37.50 Expect = 2.18e-30 / Id = 75.00 Expect = 1.19e-29 / Id = 74.29 Expect = 1.43e-29 / Id = 75.36 Sequence GAT12_ARATH GATA9_ARATH GATA4_ARATH GATA2_ARATH GATA1_ARATH GAT11_ARATH GATA7_ARATH GATA8_ARATH GATA3_ARATH GATA5_ARATH
Match Name E-value Identity Description
GAT12_ARATH 8.420e-73 49.24 GATA transcription factor 12 OS=Arabidopsis thalia... [more] GATA9_ARATH 1.129e-72 47.73 GATA transcription factor 9 OS=Arabidopsis thalian... [more] GATA4_ARATH 5.828e-43 46.84 GATA transcription factor 4 OS=Arabidopsis thalian... [more] GATA2_ARATH 7.058e-41 43.14 GATA transcription factor 2 OS=Arabidopsis thalian... [more] GATA1_ARATH 7.837e-32 75.71 GATA transcription factor 1 OS=Arabidopsis thalian... [more] GAT11_ARATH 2.728e-31 72.60 GATA transcription factor 11 OS=Arabidopsis thalia... [more] GATA7_ARATH 7.318e-31 37.50 GATA transcription factor 7 OS=Arabidopsis thalian... [more] GATA8_ARATH 2.183e-30 75.00 GATA transcription factor 8 OS=Arabidopsis thalian... [more] GATA3_ARATH 1.190e-29 74.29 GATA transcription factor 3 OS=Arabidopsis thalian... [more] GATA5_ARATH 1.432e-29 75.36 GATA transcription factor 5 OS=Arabidopsis thalian... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>Psat5g021560.1_Ps_Cameor_v1a ID=Psat5g021560.1_Ps_Cameor_v1a; Name=Psat5g021560.1; organism=Pisum sativum; type=mRNA; length=4301bp back to top protein sequence of Psat5g021560.1_Ps_Cameor_v1a
>Psat5g021560.1_Ps_Cameor_v1a ID=Psat5g021560.1_Ps_Cameor_v1a; Name=Psat5g021560.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=331bp back to top mRNA from alignment at chr5LG3:40387683..40391983+
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat5g021560.1_Ps_Cameor_v1a ID=Psat5g021560.1_Ps_Cameor_v1a; Name=Psat5g021560.1; organism=Pisum sativum; type=mRNA; length=4301bp; location=Sequence derived from: chr5LG3:40387683..40391983+ (Pisum sativumGGGTATTTCGTAAAACTTAAACCAATAAAAACTTTTTCTATGTCTTTGAA
CTCAATTAAAGCTTCATTATCAATATTTTACACTATAGTAGTTAAAAGAA
AGACTTTCTTCTTTCACATTCTTACCCAAAATAAGATAGAAAAAACAACA
ACAACTTCGTACATAGGTGTCTGATTGTCCCGTTTAAACGCAAATAGCTT
TTCTCTCTCAAATTCTTAACCACTTATTTTGTCACACTTTCTTTTTCCAA
CTTCCTATACTTTCTCACTTCGTTTTCTGCTTTCAGCTTCTAAATTAACC
TCACAATTAACACAAACAACATTTACCTCGTAACTC ATGGAAGCTCAAGA
GTTTTTCCAAACCACCTTTTTGCCTCAATTCGGTTCCTCCTCTTCCGACA
ATAATTTGACGACAACCAATGTAAGCACCGCCGCCGCTGCTAGTTCCGAC
CACTTCATCGTTGAAGATCTGTTTGATTTCTCTAATGATGATGATGCTGC
CATTGGTGACCCTGCTTTTGATTCTCCTCCTACCATTTCTGATAATTCTC
CACCTCTTGAAACTAACGTCAGTTCCAATTTTTTTATGGACAATTCTTGC
CAGAATTCTGTCGACGGCCCTTTCTCCGGCGAACTCTCCGTCCCG TATGATGATCTTGCG
GAGCTTGAATGGTTATCCAAATTTGATGAAGAATCATTCTCAAGTGAGGA
CCTACAGAAGCTTGAATTGATATCTGGCATGAAAGCATCAAACGACGCCG
CATCAAAAACACACGATGAATCCAACTCAATACTACACCCTCCTCAAGTG
TCTGTCCCCGCTAAAGCCCGCAGTAAACGACCTCGTGGACCACCATGCAA
CTGGACTTCTCGTCTTCTAGTTCTCTCTTCACCCACCATCGCCACAACAT
CTTCTCGCTCTGACATTATATCTCCACCAAAGAAACCCTCGCCGAGAAAG
AGAGACCATGGCGATGGTGAGGGTCGCAAGTGTCTTCATTGCGCCACTGA
TAAAACACCTCAGTGGCGCACTGGACCATTAGGTCCAAAAACATTATGCA
ATGCATGTGGAGTCAGGTACAAGTCAGGTCGACTCGTACCTGAATACAGA
CCCGCAGCAAGCCCAACATTCGTCCTGACGAAACACTCCAACTCGCACCG
GAAGGTCCAAGAACTCCGGCGCCAGAAGGAGATGGTGAAGGTCCACCAAC
ACCAAATGTTGCAACTACAAGTCCAACATCATCACAACATTATGTTCGAT
GGACCATCCAACGGTGACGATTACTTGATCCATCAACACGTGGGACCCGA
TTTCACGCACCTCATGTAG TACGGTGATATGGTTGGAAAGTTAAACTTCC
AACGCTGCTTCGAATATTTTTGTAGCTACAATTAATTTTACTTCTTTCTT
TCTTACTTAATTTTGTCAGGAACTTAATTTTCCGTTTCAGTAACTTTCAT
TTTTTTTAGTTTATGACTGGTCGAATTAATAATAGTTTCTTTAATTTTTC
TAGAATACCATTTTTTTATCTTATGAGTTCGCTAGCAAATTATGTTGCAA
ATAATTGATTCATGAATTGCAGAAATAGTTAGCATAAATTTTTTAAGTTT
T back to top Coding sequence (CDS) from alignment at chr5LG3:40387683..40391983+
>Psat5g021560.1_Ps_Cameor_v1a ID=Psat5g021560.1_Ps_Cameor_v1a; Name=Psat5g021560.1; organism=Pisum sativum; type=CDS; length=1986bp; location=Sequence derived from: chr5LG3:40387683..40391983+ (Pisum sativum back to top
