Psat5g035840.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat5g035840.1 vs. DB:Swiss
Match: WTF1_ARATH (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 5.507e-58 Identity = 139/392 (35.46%), Postives = 202/392 (51.53%), Query Frame = 1
Query: 49 YSHWERWMTTSKRVQD-RSKKKRVHEL--EVATEKWKITSKIIFLMELLKQEPEMVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVLWCGLTHKAEDLMEEHKRVVEENEDKAAEYVTRFLMMSVDKRLPVEKIAHFRRDFGLPMDFRTHWVNRYPQFFRVVKPSLDDVEFLELVSWNPEWAITEIEKKNXXXXXXXXXXXXXXXXSHTXXXXXXXXXXXXXXNFKRVHSYYG--------EKIKLFQGRSYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAYDGSELIEKSPLILWREKLLSLVGY-----RGRKKKFEADTESDEEG 1176
Y W T V+ R+ KR EL + ++ K ++ + ++L +P+ ++ +R L YR+ + L K R LRK P +FE+ ++ L +T +AE L + R+ E ED + + +MMS+DKR+ +EKI+H + D GLP++FR RYPQ+FRVV LEL W+PE A++ E + + T + P F RV G KI F+ Y+SPY D L+ G+LE +K A V+HELLS T EKR + DHLTHFR E Q+L +L++H +FYVS +G+R SVFL EAY SELI+K PL L +EK+ +LV RG +K E E + +G
Sbjct: 56 YGFWSTSRKTRVVVEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPA--LELTHWDPELAVSAAE--------------LSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFPRRGGPRKDEEGREVEIDG 431
BLAST of Psat5g035840.1 vs. DB:Swiss
Match: WTF1_ORYSJ (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 6.716e-57 Identity = 130/356 (36.52%), Postives = 189/356 (53.09%), Query Frame = 1
Query: 181 LLKQEPEMVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVLWCGLTHKAEDLMEEHKRVVEENEDKAAEYVTRFLMMSVDKRLPVEKIAHFRRDFGLPMDFRTHWVNRYPQFFRVVKPSLDDVEFLELVSWNPEWAITEIEKKNXXXXXXXXXXXXXXXXSHTXXXXXXXXXXXXXXNFKRVHSYYGEKIKLFQGR--------SYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAYDGSELIEKSPLILWREKLLSLVGY-RGRKKKFEADTESDEEGGDGLRLLQSGSDVED 1221
+L P+ V+ +R L +R+ + L + R+ L++ P +FE+ ++ L LT AE L + + E+E A + + LMMS DKR+ +EKIAH + D GLP +FR RYPQ+FRVV+ +D LEL W+PE A++ E E + + P F RV G K+ + R Y+SPY+D L+ GS E +K A V+HE+LS T+EKR + DHLTHFR E Q L +L++H +FYVS +G R SVFL EAY S+L+EKS L+L +EK+ +LV R ++ A +E + ++L GSDVED
Sbjct: 88 ILVSNPDRVMSLRDLGRFRRDLGLTRKRRLIALLKRFPGVFEVVEEGVYSLRFRLTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQ--MDRGPGLELTHWDPELAVSAAE--------------VAEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALVAVPRFPRRGVPATSEEADRTNGAAQMLSEGSDVED 427
BLAST of Psat5g035840.1 vs. DB:Swiss
Match: WTF1_MAIZE (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.067e-53 Identity = 124/344 (36.05%), Postives = 183/344 (53.20%), Query Frame = 1
Query: 178 ELLKQEPEMVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVLWCGLTHKAEDLMEEHKRVVEENEDKAAEYVTRFLMMSVDKRLPVEKIAHFRRDFGLPMDFRTHWVNRYPQFFRVVKPSLDDVEFLELVSWNPEWAITEIEKKNXXXXXXXXXXXXXXXXSHTXXXXXXXXXXXXXXNFKRVHSYYG--------EKIKLFQGRSYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAYDGSELIEKSPLILWREKLLSLVGYRGRKKKFEADTESDEEGGDG 1185
+L +P+ V+ +R L +R+ + L + R+ LR+ P +F++ ++ L LT AE L + R+ E+E A + + LMMS +KR+ +EK+AH + D GLP +FR RYPQ+FRVV+ +D LEL W+PE A++ E E S + P F RV G +I F+ Y+SPYAD L+ GS E +K A V+HE+LS TVEKR + DHLTHFR E Q L ++++H +FYVS +G R SVFL EAY S+L+EK+ L+L +EK+ +LV ++ T + EG +G
Sbjct: 81 NILVAQPDRVMSLRELGRFRRDLGLTRKRRLIALLRRFPGVFDVVEEGVYSLRFRLTPAAERLYLDELRLRNESEGLAVAKLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVR--MDRGPALELTHWDPELAVSAAE--------------LAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMPYISPYADFSHLRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMIIRHPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAVPRFPRRAAVGTGEEAEGMNG 408
BLAST of Psat5g035840.1 vs. DB:Swiss
Match: RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 6.739e-41 Identity = 123/383 (32.11%), Postives = 191/383 (49.87%), Query Frame = 1
Query: 73 TTSKRVQDRSKKKRVHELEVATEKWKITSKIIFLMELLKQEPEMVIPVRSLSHYRKQISLP-KPHRISDFLRKTPKLFELYKDR-NGVLWCGLTHKAED-LMEEHKRVVEENEDKAAEYVTRFLMMSVDKRLPVEKIAHFRRDFGLPMDFRTHWVNRYPQFFRVVKPSLDDVEFLELVSWNPEWAITEIEKKNXXXXXXXXXXXXXXXXSHTXXXXXXXXXXXXXXNFK---RVHSYYGEKIKLFQGRSYLSPYADAKGLKPGSLE----FDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSER---GKRFSVFLTEAYDGSELIEKSPLILWREKLLSLVGYRGRKKKFEADTESDEEGGD 1182
TT + QDR R H + E K K++ L+ +P I + L +++ L K H FL K P +FE+Y+ +L+C LT KA D + EH+ V+++ D A + + +MMS R+ +E + R +FGLP DF + ++PQFFR++ +++E+V +P +I IE+ + T G+ + F NF ++ Y+ + +Q Y SPY D G S+E +KR+VA +HELLS TVEK++ + + HFR + +P+KL LL+H GIFY+S R GK +VFL E Y EL+E + + L R +L LV RK K +A+ +G D
Sbjct: 38 TTIPKKQDRV---RDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPD-AVTRLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAIER-------------VREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAELVRYRDGLD 403
BLAST of Psat5g035840.1 vs. DB:Swiss
Match: WTF9_ARATH (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 2.408e-17 Identity = 84/320 (26.25%), Postives = 137/320 (42.81%), Query Frame = 1
Query: 163 IIFLMELLKQEPEMVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELY-KDRNGVLWCGLTHKAEDLMEEHKRVVEENEDKAAEYVTRFLMMSVDKRLPVEKIAHFRRDFGLPMDFRTHWVNRYPQFFRVVKPSLDDVEFLELVSWNPEWAITEIEKKNXXXXXXXXXXXXXXXXSHTXXXXXXXXXXXXXXNFKRVHSYYGEKIKLFQGRSYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAYDGSELIEKSPLILWREKLLSLV 1119
++ L + QEP IP+ ++S +Q + +I+ FLRK P +FE + + W LT +A +L + + V + + D + + + ++MS D LP+ + + GLP D+ FR V D V+ L V +N + + +KN L FPS R+ + + FQ Y+SPY D L P S +KR V +HELL VE L + +PQK+ + +H IFY+S + K + L E Y +E P++ R+K + L+
Sbjct: 52 VVSLKNCIVQEPNRCIPISAISKKTRQFDVST--KIAHFLRKFPSIFEEFVGPEYNLPWFRLTPEATELDRQERVVYQTSADDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDME-DGVKGLA-VDYNGGDKVLSVLQKNAMKKR------------RGEVSLEEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLM 355 The following BLAST results are available for this feature:
BLAST of Psat5g035840.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 5
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat5g035840.1_Ps_Cameor_v1a ID=Psat5g035840.1_Ps_Cameor_v1a; Name=Psat5g035840.1; organism=Pisum sativum; type=mRNA; length=3076bpback to top protein sequence of Psat5g035840.1_Ps_Cameor_v1a >Psat5g035840.1_Ps_Cameor_v1a ID=Psat5g035840.1_Ps_Cameor_v1a; Name=Psat5g035840.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=438bpback to top mRNA from alignment at chr5LG3:66228363..66231438- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat5g035840.1_Ps_Cameor_v1a ID=Psat5g035840.1_Ps_Cameor_v1a; Name=Psat5g035840.1; organism=Pisum sativum; type=mRNA; length=3076bp; location=Sequence derived from: chr5LG3:66228363..66231438- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr5LG3:66228363..66231438- >Psat5g035840.1_Ps_Cameor_v1a ID=Psat5g035840.1_Ps_Cameor_v1a; Name=Psat5g035840.1; organism=Pisum sativum; type=CDS; length=2628bp; location=Sequence derived from: chr5LG3:66228363..66231438- (Pisum sativumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|