Transcript Overview
Name Psat6g001080.1 Unique Name Psat6g001080.1_Ps_Cameor_v1a Type mRNA Organism Pisum sativum (pea) Sequence length 1552
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Psat6g001080.1 Psat6g001080.1_Ps_Cameor_v1a-protein Pisum sativum polypeptide Psat6g001080.1_Ps_Cameor_v1a Psat6g001080.1_Ps_Cameor_v1a Pisum sativum polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat6g001080.1.five_prime_utr1 Psat6g001080.1.five_prime_utr1_Ps_Cameor_v1a Pisum sativum five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat6g001080.1.cds1 Psat6g001080.1.cds1_Ps_Cameor_v1a Pisum sativum CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat6g001080.1.exon1 Psat6g001080.1.exon1_Ps_Cameor_v1a Pisum sativum exon
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Psat6g001080.1.three_prime_utr1 Psat6g001080.1.three_prime_utr1_Ps_Cameor_v1a Pisum sativum three_prime_UTR
Homology
BLAST of Psat6g001080.1 vs. DB:Swiss
Match:
Y1607_ARATH (Uncharacterized protein At1g76070 OS=Arabidopsis thaliana OX=3702 GN=At1g76070 PE=1 SV=1)
HSP 1 Score: 101.293 bits (251), Expect = 2.499e-24
Identity = 84/270 (31.11%), Postives = 118/270 (43.70%), Query Frame = 1
Query: 43 KAITVTFQNAPFSPGREHKFRSDNNTNRWGAKTNGGKGFSGPMVTMIPREARRKPRDGGVNVTQEPTSPKISCMGQ------------XXXXXXXXXXXXXTTDANTPKDADEKKSKSKFQRIFS----------QRSKSKFVERKFDESGSVGGGSKAPPMGDMKRFASGREAFSSFNWKAVIEPEE----IDERDCFTDAEEDEILI-------------PFSAPILVGGGGEGDDSRPSLKFKPRNEINLWKRRTMAPPRPLQLNPV 735
KA++ + PFSPGR+ +N+ N A FSGPMV ++P AR + R+ V EPTSPK+SC+GQ IPK T ++ DEK SK + IFS ++S V + +V + P +G MK+FAS R+A F+W ++ EE R ++D + + PFSAP L KP+ E+NLWKRRTM PP+PL L +
Sbjct: 24 KAMSFGHRVPPFSPGRD--LHHNNHHNYTAA---NKMFFSGPMVPLVPNAARVR-RNKSDAVWDEPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSLIPKISKTSTSSLTKEDEKGRLSKIKSIFSFSPASGRNTSRKSHPTAVSAADEHPVTVVSTAAVPSLGQMKKFASSRDALGDFDWAVEMKHEEESPADHHRGYYSDDDTRGAYLRYDDDEDEDDIIIPFSAP---------------LGLKPKKEVNLWKRRTMDPPKPLHLQTI 272
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
200 400 600 800 1000 1200 1400 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 230..249 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 25..158 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 108..122
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Psat6g001080.1_Ps_Cameor_v1a ID=Psat6g001080.1_Ps_Cameor_v1a; Name=Psat6g001080.1; organism=Pisum sativum; type=mRNA; length=1552bp back to top protein sequence of Psat6g001080.1_Ps_Cameor_v1a
>Psat6g001080.1_Ps_Cameor_v1a ID=Psat6g001080.1_Ps_Cameor_v1a; Name=Psat6g001080.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=250bp back to top mRNA from alignment at chr6LG2:1029282..1030833-
Legend: five_prime_UTR exon polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat6g001080.1_Ps_Cameor_v1a ID=Psat6g001080.1_Ps_Cameor_v1a; Name=Psat6g001080.1; organism=Pisum sativum; type=mRNA; length=1552bp; location=Sequence derived from: chr6LG2:1029282..1030833- (Pisum sativumAAAAAGGTATGCTTGTACAGCATCAAAAATTCAAAGCAGAAAACGACAAT
TTGTCGATAAAAAATATCTTAACAAGACCGTAAGCTGCTTCAACAGCAAC
CTTTTGTTTCATAAACCGCATGTTTTTTAATGCTAGTTAATTTACTAATT
ATGTTTGTTTATTGAGTTAAGGAAAGTGCGTTATTCACAGCGATTTGTTT
GACCAACATAACCCTTTTCACAACACAATCTTCTCTCACACCTTTATTGA
CAGAGTCAAATACCAAATACTACATGTTAAAGCAATCACAGTAATACTAG
ATTTTACTATATACACAAAACCCTCTTTTTCACGTTTCAACACCGCATAT
ATATACCCACACAAACACATAAAGGTATATAGTTTTGTTTTGTAAGTGTG
ATTCAATTGAACAACTGAATCATT ATGGAGAAAGAGAAACAGAGTAAGCT
GAAGAACAAGTTTTTGAAAGCAATAACAGTAACGTTTCAAAACGCACCTT
TCAGTCCCGGAAGGGAGCATAAATTTAGGTCAGACAATAACACAAACAGA
TGGGGTGCAAAAACGAACGGTGGAAAAGGATTCTCAGGACCTATGGTGAC
TATGATTCCTCGCGAAGCTAGAAGAAAACCTAGAGATGGCGGTGTTAACG
TAACACAAGAACCAACTTCACCGAAGATTTCTTGTATGGGACAGATCAAG
CATCACAAGAAGAAACATATTCCGAAAAACATAACTACGGATGCAAATAC
TCCAAAGGATGCAGATGAGAAGAAATCGAAATCGAAGTTTCAGAGAATAT
TTTCACAGAGATCGAAATCGAAGTTTGTGGAAAGGAAATTTGACGAGTCT
GGATCTGTTGGTGGAGGGAGCAAAGCGCCGCCGATGGGTGATATGAAGAG
ATTTGCGAGTGGGCGTGAAGCTTTTTCGAGTTTCAATTGGAAAGCTGTGA
TTGAGCCAGAGGAAATTGATGAGAGGGATTGCTTTACGGATGCAGAAGAG
GATGAGATCTTGATTCCATTTTCTGCACCAATTTTGGTTGGTGGAGGTGG
TGAAGGTGATGATTCTAGACCTAGTTTGAAGTTTAAGCCAAGGAATGAAA
TAAATCTTTGGAAGAGAAGAACAATGGCACCGCCAAGGCCTCTTCAGTTG
AATCCTGTGCTTAAGGCTAAGTAA ATTGTTAATTCTTTCATAATCAATAA
CTTGTTCAAATTGTAGATTTCTTCATCTTTTTATATATATACTATATTTT
TTGTTTATCCTTTTGATGCTCATATAATAGATTTCTTCTTCTTAGCTTTT
TTATTAAACTCAGATTCAACCCAGATGGTTTGTGCGAGTCAAATAAAAAA
TATTGAAATGAAATTAGATAAGGGAAGAATATTTAATTTTCCAAATAATT
TTAGTGATGGTCATTTCTCAGGAAATTTTCAAAATAAGAAAGTGAGAATA
AGTATAATAATTTTTTTCTCCATTTTCTAATGGCATTTCAAAAAAAATCG
GTTATATTTAAATTTAATATGAATAATTGTTGATATAATTATTTTATGTA
AA back to top Coding sequence (CDS) from alignment at chr6LG2:1029282..1030833-
>Psat6g001080.1_Ps_Cameor_v1a ID=Psat6g001080.1_Ps_Cameor_v1a; Name=Psat6g001080.1; organism=Pisum sativum; type=CDS; length=1500bp; location=Sequence derived from: chr6LG2:1029282..1030833- (Pisum sativum back to top
