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Transcript Overview
| Name | Psat6g001080.1 |
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| Unique Name | Psat6g001080.1_Ps_Cameor_v1a |
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| Type | mRNA |
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| Organism | Pisum sativum (pea) |
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| Sequence length | 1552 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat6g001080.1 | Psat6g001080.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
| Psat6g001080.1_Ps_Cameor_v1a | Psat6g001080.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat6g001080.1.five_prime_utr1 | Psat6g001080.1.five_prime_utr1_Ps_Cameor_v1a | Pisum sativum | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat6g001080.1.cds1 | Psat6g001080.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat6g001080.1.exon1 | Psat6g001080.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Psat6g001080.1.three_prime_utr1 | Psat6g001080.1.three_prime_utr1_Ps_Cameor_v1a | Pisum sativum | three_prime_UTR |
Homology
BLAST of Psat6g001080.1 vs. DB:Swiss
Match: Y1607_ARATH (Uncharacterized protein At1g76070 OS=Arabidopsis thaliana OX=3702 GN=At1g76070 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.499e-24 Identity = 84/270 (31.11%), Postives = 118/270 (43.70%), Query Frame = 1
Query: 43 KAITVTFQNAPFSPGREHKFRSDNNTNRWGAKTNGGKGFSGPMVTMIPREARRKPRDGGVNVTQEPTSPKISCMGQ------------XXXXXXXXXXXXXTTDANTPKDADEKKSKSKFQRIFS----------QRSKSKFVERKFDESGSVGGGSKAPPMGDMKRFASGREAFSSFNWKAVIEPEE----IDERDCFTDAEEDEILI-------------PFSAPILVGGGGEGDDSRPSLKFKPRNEINLWKRRTMAPPRPLQLNPV 735
KA++ + PFSPGR+ +N+ N A FSGPMV ++P AR + R+ V EPTSPK+SC+GQ IPK T ++ DEK SK + IFS ++S V + +V + P +G MK+FAS R+A F+W ++ EE R ++D + + PFSAP L KP+ E+NLWKRRTM PP+PL L +
Sbjct: 24 KAMSFGHRVPPFSPGRD--LHHNNHHNYTAA---NKMFFSGPMVPLVPNAARVR-RNKSDAVWDEPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSLIPKISKTSTSSLTKEDEKGRLSKIKSIFSFSPASGRNTSRKSHPTAVSAADEHPVTVVSTAAVPSLGQMKKFASSRDALGDFDWAVEMKHEEESPADHHRGYYSDDDTRGAYLRYDDDEDEDDIIIPFSAP---------------LGLKPKKEVNLWKRRTMDPPKPLHLQTI 272
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 230..249 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 25..158 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 108..122 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat6g001080.1_Ps_Cameor_v1a ID=Psat6g001080.1_Ps_Cameor_v1a; Name=Psat6g001080.1; organism=Pisum sativum; type=mRNA; length=1552bp
AAAAAGGTATGCTTGTACAGCATCAAAAATTCAAAGCAGAAAACGACAAT
TTGTCGATAAAAAATATCTTAACAAGACCGTAAGCTGCTTCAACAGCAAC
CTTTTGTTTCATAAACCGCATGTTTTTTAATGCTAGTTAATTTACTAATT
ATGTTTGTTTATTGAGTTAAGGAAAGTGCGTTATTCACAGCGATTTGTTT
GACCAACATAACCCTTTTCACAACACAATCTTCTCTCACACCTTTATTGA
CAGAGTCAAATACCAAATACTACATGTTAAAGCAATCACAGTAATACTAG
ATTTTACTATATACACAAAACCCTCTTTTTCACGTTTCAACACCGCATAT
ATATACCCACACAAACACATAAAGGTATATAGTTTTGTTTTGTAAGTGTG
ATTCAATTGAACAACTGAATCATTATGGAGAAAGAGAAACAGAGTAAGCT
GAAGAACAAGTTTTTGAAAGCAATAACAGTAACGTTTCAAAACGCACCTT
TCAGTCCCGGAAGGGAGCATAAATTTAGGTCAGACAATAACACAAACAGA
TGGGGTGCAAAAACGAACGGTGGAAAAGGATTCTCAGGACCTATGGTGAC
TATGATTCCTCGCGAAGCTAGAAGAAAACCTAGAGATGGCGGTGTTAACG
TAACACAAGAACCAACTTCACCGAAGATTTCTTGTATGGGACAGATCAAG
CATCACAAGAAGAAACATATTCCGAAAAACATAACTACGGATGCAAATAC
TCCAAAGGATGCAGATGAGAAGAAATCGAAATCGAAGTTTCAGAGAATAT
TTTCACAGAGATCGAAATCGAAGTTTGTGGAAAGGAAATTTGACGAGTCT
GGATCTGTTGGTGGAGGGAGCAAAGCGCCGCCGATGGGTGATATGAAGAG
ATTTGCGAGTGGGCGTGAAGCTTTTTCGAGTTTCAATTGGAAAGCTGTGA
TTGAGCCAGAGGAAATTGATGAGAGGGATTGCTTTACGGATGCAGAAGAG
GATGAGATCTTGATTCCATTTTCTGCACCAATTTTGGTTGGTGGAGGTGG
TGAAGGTGATGATTCTAGACCTAGTTTGAAGTTTAAGCCAAGGAATGAAA
TAAATCTTTGGAAGAGAAGAACAATGGCACCGCCAAGGCCTCTTCAGTTG
AATCCTGTGCTTAAGGCTAAGTAAATTGTTAATTCTTTCATAATCAATAA
CTTGTTCAAATTGTAGATTTCTTCATCTTTTTATATATATACTATATTTT
TTGTTTATCCTTTTGATGCTCATATAATAGATTTCTTCTTCTTAGCTTTT
TTATTAAACTCAGATTCAACCCAGATGGTTTGTGCGAGTCAAATAAAAAA
TATTGAAATGAAATTAGATAAGGGAAGAATATTTAATTTTCCAAATAATT
TTAGTGATGGTCATTTCTCAGGAAATTTTCAAAATAAGAAAGTGAGAATA
AGTATAATAATTTTTTTCTCCATTTTCTAATGGCATTTCAAAAAAAATCG
GTTATATTTAAATTTAATATGAATAATTGTTGATATAATTATTTTATGTA
AA back to topprotein sequence of Psat6g001080.1_Ps_Cameor_v1a >Psat6g001080.1_Ps_Cameor_v1a ID=Psat6g001080.1_Ps_Cameor_v1a; Name=Psat6g001080.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=250bp
MEKEKQSKLKNKFLKAITVTFQNAPFSPGREHKFRSDNNTNRWGAKTNGG
KGFSGPMVTMIPREARRKPRDGGVNVTQEPTSPKISCMGQIKHHKKKHIP
KNITTDANTPKDADEKKSKSKFQRIFSQRSKSKFVERKFDESGSVGGGSK
APPMGDMKRFASGREAFSSFNWKAVIEPEEIDERDCFTDAEEDEILIPFS
APILVGGGGEGDDSRPSLKFKPRNEINLWKRRTMAPPRPLQLNPVLKAK* back to topmRNA from alignment at chr6LG2:1029282..1030833- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Psat6g001080.1_Ps_Cameor_v1a ID=Psat6g001080.1_Ps_Cameor_v1a; Name=Psat6g001080.1; organism=Pisum sativum; type=mRNA; length=1552bp; location=Sequence derived from: chr6LG2:1029282..1030833- (Pisum sativum
AAAAAGGTATGCTTGTACAGCATCAAAAATTCAAAGCAGAAAACGACAAT
TTGTCGATAAAAAATATCTTAACAAGACCGTAAGCTGCTTCAACAGCAAC
CTTTTGTTTCATAAACCGCATGTTTTTTAATGCTAGTTAATTTACTAATT
ATGTTTGTTTATTGAGTTAAGGAAAGTGCGTTATTCACAGCGATTTGTTT
GACCAACATAACCCTTTTCACAACACAATCTTCTCTCACACCTTTATTGA
CAGAGTCAAATACCAAATACTACATGTTAAAGCAATCACAGTAATACTAG
ATTTTACTATATACACAAAACCCTCTTTTTCACGTTTCAACACCGCATAT
ATATACCCACACAAACACATAAAGGTATATAGTTTTGTTTTGTAAGTGTG
ATTCAATTGAACAACTGAATCATTATGGAGAAAGAGAAACAGAGTAAGCT
GAAGAACAAGTTTTTGAAAGCAATAACAGTAACGTTTCAAAACGCACCTT
TCAGTCCCGGAAGGGAGCATAAATTTAGGTCAGACAATAACACAAACAGA
TGGGGTGCAAAAACGAACGGTGGAAAAGGATTCTCAGGACCTATGGTGAC
TATGATTCCTCGCGAAGCTAGAAGAAAACCTAGAGATGGCGGTGTTAACG
TAACACAAGAACCAACTTCACCGAAGATTTCTTGTATGGGACAGATCAAG
CATCACAAGAAGAAACATATTCCGAAAAACATAACTACGGATGCAAATAC
TCCAAAGGATGCAGATGAGAAGAAATCGAAATCGAAGTTTCAGAGAATAT
TTTCACAGAGATCGAAATCGAAGTTTGTGGAAAGGAAATTTGACGAGTCT
GGATCTGTTGGTGGAGGGAGCAAAGCGCCGCCGATGGGTGATATGAAGAG
ATTTGCGAGTGGGCGTGAAGCTTTTTCGAGTTTCAATTGGAAAGCTGTGA
TTGAGCCAGAGGAAATTGATGAGAGGGATTGCTTTACGGATGCAGAAGAG
GATGAGATCTTGATTCCATTTTCTGCACCAATTTTGGTTGGTGGAGGTGG
TGAAGGTGATGATTCTAGACCTAGTTTGAAGTTTAAGCCAAGGAATGAAA
TAAATCTTTGGAAGAGAAGAACAATGGCACCGCCAAGGCCTCTTCAGTTG
AATCCTGTGCTTAAGGCTAAGTAAATTGTTAATTCTTTCATAATCAATAA
CTTGTTCAAATTGTAGATTTCTTCATCTTTTTATATATATACTATATTTT
TTGTTTATCCTTTTGATGCTCATATAATAGATTTCTTCTTCTTAGCTTTT
TTATTAAACTCAGATTCAACCCAGATGGTTTGTGCGAGTCAAATAAAAAA
TATTGAAATGAAATTAGATAAGGGAAGAATATTTAATTTTCCAAATAATT
TTAGTGATGGTCATTTCTCAGGAAATTTTCAAAATAAGAAAGTGAGAATA
AGTATAATAATTTTTTTCTCCATTTTCTAATGGCATTTCAAAAAAAATCG
GTTATATTTAAATTTAATATGAATAATTGTTGATATAATTATTTTATGTA
AA back to topCoding sequence (CDS) from alignment at chr6LG2:1029282..1030833- >Psat6g001080.1_Ps_Cameor_v1a ID=Psat6g001080.1_Ps_Cameor_v1a; Name=Psat6g001080.1; organism=Pisum sativum; type=CDS; length=1500bp; location=Sequence derived from: chr6LG2:1029282..1030833- (Pisum sativum
ATGGAGAAAGAGAAACAGAGTAAGCTGAAGAACAAGTTTTTGAAAGCAAT
AACAGTAACGTTTCAAAACGCACCTTTCAGTCCCGGAAGGGAGCATAAAT
TTAGGTCAGACAATAACACAAACAGATGGGGTGCAAAAACGAACGGTGGA
AAAGGATTCTCAGGACCTATGGTGACTATGATTCCTCGCGAAGCTAGAAG
AAAACCTAGAGATGGCGGTGTTAACGTAACACAAGAACCAACTTCACCGA
AGATTTCTTGTATGGGACAGATCAAGCATCACAAGAAGAAACATATTCCG
AAAAACATAACTACGGATGCAAATACTCCAAAGGATGCAGATGAGAAGAA
ATCGAAATCGAAGTTTCAGAGAATATTTTCACAGAGATCGAAATCGAAGT
TTGTGGAAAGGAAATTTGACGAGTCTGGATCTGTTGGTGGAGGGAGCAAA
GCGCCGCCGATGGGTGATATGAAGAGATTTGCGAGTGGGCGTGAAGCTTT
TTCGAGTTTCAATTGGAAAGCTGTGATTGAGCCAGAGGAAATTGATGAGA
GGGATTGCTTTACGGATGCAGAAGAGGATGAGATCTTGATTCCATTTTCT
GCACCAATTTTGGTTGGTGGAGGTGGTGAAGGTGATGATTCTAGACCTAG
TTTGAAGTTTAAGCCAAGGAATGAAATAAATCTTTGGAAGAGAAGAACAA
TGGCACCGCCAAGGCCTCTTCAGTTGAATCCTGTGCTTAAGGCTAAGTAA
ATGGAGAAAGAGAAACAGAGTAAGCTGAAGAACAAGTTTTTGAAAGCAAT
AACAGTAACGTTTCAAAACGCACCTTTCAGTCCCGGAAGGGAGCATAAAT
TTAGGTCAGACAATAACACAAACAGATGGGGTGCAAAAACGAACGGTGGA
AAAGGATTCTCAGGACCTATGGTGACTATGATTCCTCGCGAAGCTAGAAG
AAAACCTAGAGATGGCGGTGTTAACGTAACACAAGAACCAACTTCACCGA
AGATTTCTTGTATGGGACAGATCAAGCATCACAAGAAGAAACATATTCCG
AAAAACATAACTACGGATGCAAATACTCCAAAGGATGCAGATGAGAAGAA
ATCGAAATCGAAGTTTCAGAGAATATTTTCACAGAGATCGAAATCGAAGT
TTGTGGAAAGGAAATTTGACGAGTCTGGATCTGTTGGTGGAGGGAGCAAA
GCGCCGCCGATGGGTGATATGAAGAGATTTGCGAGTGGGCGTGAAGCTTT
TTCGAGTTTCAATTGGAAAGCTGTGATTGAGCCAGAGGAAATTGATGAGA
GGGATTGCTTTACGGATGCAGAAGAGGATGAGATCTTGATTCCATTTTCT
GCACCAATTTTGGTTGGTGGAGGTGGTGAAGGTGATGATTCTAGACCTAG
TTTGAAGTTTAAGCCAAGGAATGAAATAAATCTTTGGAAGAGAAGAACAA
TGGCACCGCCAAGGCCTCTTCAGTTGAATCCTGTGCTTAAGGCTAAGTAA back to top
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