Psat6g002880.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 4.512e-30 Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 1
Query: 109 LQQIDCNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKCPCYASLTTRGGKPKCP 300
++IDC G+C ARCRLSSRPRLC RACGTCC RCNCVPPGT+GN E CPCYASLTT G K KCP
Sbjct: 41 YKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 2.635e-29 Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 82 EYTQTQGSLLQQIDCNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKCPCYASLTTRGGKPKCP 300
E +Q + ++IDC +CVARCRLS RPRLC RACGTCC RCNCVPPGT GN +KC CYASLTT GG+ KCP
Sbjct: 26 ENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.285e-26 Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 58 FIDAAHQSEYTQTQGSLLQQIDCNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKCPCYASLTTRGGKPKCP 300
F H +E +Q G + +IDC G C RC SSRP LC RAC +CC RCNCVPPGTAGN CPCYAS+TTRGG+ KCP
Sbjct: 20 FELHVHAAEDSQV-GEGVVKIDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: GASAB_ARATH (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.291e-25 Identity = 48/79 (60.76%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 64 DAAHQSEYTQTQGSLLQQIDCNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKCPCYASLTTRGGKPKCP 300
D H T +IDCN C RC LSSRP LC RACGTCC RCNCV PGT+GN +KCPCY SLTT GG+ KCP
Sbjct: 19 DFVHADMVTSNDA---PKIDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: GASA9_ARATH (Gibberellin-regulated protein 9 OS=Arabidopsis thaliana OX=3702 GN=GASA9 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.722e-19 Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 115 QIDCNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKCPCYASLTTRGGKPKCP 300
+I+C +C RC +SR ++C RACG+CC +C CVPPGT+GN CPCYAS+ T G K KCP
Sbjct: 58 RINCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: GASAE_ARATH (Gibberellin-regulated protein 14 OS=Arabidopsis thaliana OX=3702 GN=GASA14 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.032e-15 Identity = 39/63 (61.90%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 115 QIDCNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKC-PCYASLTTRGGKPKCP 300
+IDC C RC SR +C RAC TCC RC CVPPGT GN+EKC CYA++ TRGGK KCP
Sbjct: 213 RIDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKCP 275
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.477e-15 Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 100 GSLLQQIDCNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKCPCYASLTTRGGKPKCP 300
G + +IDC G C RC SSR +LC RAC +CC RCNCVPPGT+GN CPCYAS+TT GG+ KCP
Sbjct: 33 GEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: GASA6_ARATH (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 2.346e-12 Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1
Query: 109 LQQIDCNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKCPCYASLTTRGGKPKCP 300
L+ C G C RC + + C C CC +C CVPPGT GN++ CPCY + T+ G PKCP
Sbjct: 38 LKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: PMLN_PRUPE (Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 4.748e-12 Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 124 CNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKCPCYASLTTRGGKPKCP 300
C+ C RC + C + CG CC +C+CVP GT GN+++CPCY L G PKCP
Sbjct: 5 CDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPKCP 63
BLAST of Psat6g002880.1 vs. DB:Swiss
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum OX=4081 GN=RSI-1 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 5.892e-12 Identity = 29/64 (45.31%), Postives = 36/64 (56.25%), Query Frame = 1
Query: 109 LQQIDCNGSCVARCRLSSRPRLCQRACGTCCRRCNCVPPGTAGNQEKCPCYASLTTRGGKPKCP 300
L+ DC C RC +S + C C CC C CVP G GN++ CPCY + T+ GKPKCP
Sbjct: 33 LRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96 The following BLAST results are available for this feature:
BLAST of Psat6g002880.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat6g002880.1_Ps_Cameor_v1a ID=Psat6g002880.1_Ps_Cameor_v1a; Name=Psat6g002880.1; organism=Pisum sativum; type=mRNA; length=1777bpback to top protein sequence of Psat6g002880.1_Ps_Cameor_v1a >Psat6g002880.1_Ps_Cameor_v1a ID=Psat6g002880.1_Ps_Cameor_v1a; Name=Psat6g002880.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=101bpback to top mRNA from alignment at chr6LG2:1903304..1905080+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat6g002880.1_Ps_Cameor_v1a ID=Psat6g002880.1_Ps_Cameor_v1a; Name=Psat6g002880.1; organism=Pisum sativum; type=mRNA; length=1777bp; location=Sequence derived from: chr6LG2:1903304..1905080+ (Pisum sativumback to top Coding sequence (CDS) from alignment at chr6LG2:1903304..1905080+ >Psat6g002880.1_Ps_Cameor_v1a ID=Psat6g002880.1_Ps_Cameor_v1a; Name=Psat6g002880.1; organism=Pisum sativum; type=CDS; length=606bp; location=Sequence derived from: chr6LG2:1903304..1905080+ (Pisum sativumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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