Psat6g006240.6
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBGC2_ORYSJ (Probable GTP-binding protein OBGC2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0799700 PE=2 SV=1) HSP 1 Score: 419.468 bits (1077), Expect = 5.074e-144 Identity = 234/343 (68.22%), Postives = 274/343 (79.88%), Query Frame = 1 Query: 1 MGGHGGDVVIYADETKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGTVVKSKRGKMLADLARHGDEVLVARGGQGGISLLDMPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDASTENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDLPEVEDKLPILTQEILRIGSDGTASQQKPTSEIPAQLLSDESDTK--------EKKLEDYPRPHSVIGVSVL 1005 MGGHGGDVV+YADE ++TLL FH K R+ AKRGGNV A G +S + NG A T+RIPVP+GTVVK K+G +LADLA GDEV+VARGGQGGISL+D+P++ R+K L+ N+MRD SD+VL+HGQPGEEV LEL LRVVADVGLVGLPNAGKSTLL AITLA+PDIADYPFTTLMPNLGRL GDP LGA +SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTR++VHVVDA+ ++PV+DY+ VREELRMYNP+YLERPY+VVLNKIDLP+ +D+L L EI IG + TSE + E +T EK+L DYPRP +V+G SVL Sbjct: 137 MGGHGGDVVVYADEAEETLLRFHEKARYCAKRGGNVGATGTLSSRMHNGFAGETLRIPVPVGTVVKRKKGAVLADLAHPGDEVIVARGGQGGISLIDVPEYRRRKAMVLSPNIMRDVSDRVLIHGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGRLGGDPALGALQFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVIVHVVDAAADDPVDDYKIVREELRMYNPQYLERPYVVVLNKIDLPKAQDRLSSLAFEISSIGCEECDGNN--TSEDSLNGNTGEHNTSSETKVEGGEKELRDYPRPQAVVGASVL 477
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBG_DICT6 (GTPase Obg OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) OX=309799 GN=obg PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 4.563e-51 Identity = 120/277 (43.32%), Postives = 168/277 (60.65%), Query Frame = 1 Query: 19 DVVIYADETKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGTVV-KSKRGKMLADLARHGDEVLVARGGQGGISLLDMPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDAS--TENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDLPEVEDKLP 840 DV+I ADE DTLL+FH K + A+RG + + G + I VP GT++ ++ G+++ADL HG V+VARGG+GG + T T+ + + G+ GEE L L L+++ADVGLVGLPNAGKSTLL I+ A P+IA YPFTT PNLG ++ + T+AD+PGLIEGAH KG+G FLRH+ RT +LV V+DA+ P Y +++EL +Y+P+ LE+P I+ +NKIDLPE +++LP Sbjct: 43 DVIIEADENLDTLLDFHYKRHYYAERGEHGKGKN------QKGKDGEDLIIKVPTGTLIFDAETGELIADLVSHGQRVVVARGGKGG-----------RGNTHFATSTRQ--APYFAEKGEKGEERWLYLELKLLADVGLVGLPNAGKSTLLSKISNANPEIAPYPFTTKTPNLGVVERE--------DITFTVADIPGLIEGAHENKGMGDEFLRHIERTLVLVFVIDAADLVTPPQKAYEILKKELYLYSPKLLEKPRIIAINKIDLPEAQERLP 292
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBG_DICTD (GTPase Obg OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) OX=515635 GN=obg PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 2.021e-49 Identity = 129/315 (40.95%), Postives = 181/315 (57.46%), Query Frame = 1 Query: 22 VVIYADETKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGTVV-KSKRGKMLADLARHGDEVLVARGGQGGISLLDMPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDAS--TENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDLPEVEDKLPILTQEILRIGSDGTASQQKPTSEIPAQLLSDESDTKEKK 957 V+I ADE DTLL+FH K + A+RG + + G + I VP+GT++ + G++LADL HG V+VA+GG+GG + N TS T ++K G+ GEE L L L+++ADVGL+GLPNAGKSTLL I+ A P+IA YPFTT PNLG ++ + T+AD+PGLIEGAH KG+G FLRH+ RT +LV V+DA+ P Y +++EL +Y+P+ LE+P I+ +NKIDLPE ++++P + + + G K I L E KEKK Sbjct: 44 VIIEADENLDTLLDFHYKRHYYAERGEHGKGKN------QKGKDGKDLVIKVPVGTLIFDVETGELLADLVSHGQRVVVAKGGKGG-------RGNAHFATS--TRQTPYFAEK----GEKGEERWLYLELKLLADVGLLGLPNAGKSTLLSRISNATPEIAPYPFTTKTPNLGVVERE--------DITFTVADIPGLIEGAHENKGMGDEFLRHIERTSVLVFVLDAADMVNPPQRAYEILKKELYLYSPKLLEKPRIIAINKIDLPEAQERIPEIEEWLKNEGVPYVFISAKEGINIDKLLELMEKYVKEKK 331
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBG_SYNJB (GTPase Obg OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=obg PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 7.318e-49 Identity = 113/267 (42.32%), Postives = 160/267 (59.93%), Query Frame = 1 Query: 22 VVIYADETKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGTVV-KSKRGKMLADLARHGDEVLVARGGQGGISLLD-MPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDASTENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDL 816 V++ AD TLL+F + A+ G R+G + + VP GTVV ++ G++L DL GD++LVARGG+GG+ + HNR + + G+ GE V+L L L+++A+VG+VGLPNAGKSTL+ ++ A+P IADYPFTTL PNLG + G AD+PGLIEGAHLG GLG FLRH+ RTR+L+H+VD + +PV DY+ +++ELR Y +++P I+VLNKID+ Sbjct: 45 VILVADPGLQTLLDFRFQPVIKAEHGAK------GGPNHRSGASGADRLVRVPCGTVVFNAETGELLGDLVGKGDQLLVARGGKGGLGNAHFLSNHNR--------------APRQFTKGEAGERVRLRLELKLIAEVGIVGLPNAGKSTLISVVSSARPKIADYPFTTLQPNLGVVPHPSGDG-------VVFADIPGLIEGAHLGVGLGHEFLRHVERTRVLIHLVDGTAADPVKDYQVIQQELRAYGHGLIDKPQILVLNKIDV 284
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBG_SYNAS (GTPase Obg OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=obg PE=3 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 2.799e-48 Identity = 119/290 (41.03%), Postives = 170/290 (58.62%), Query Frame = 1 Query: 19 DVVIYADETKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGTVV-KSKRGKMLADLARHGDEVLVARGGQGGISLLDMPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDAS---TENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDLPEVEDKLPILTQEILRIGSD 876 DVVI A + +TLL+ K AK GG+ + R G +AP + IPVP+GT+V S+ G++LADL G E +VA GG GG + N + T+ + + + G PGEE + L L+++ADVG++GLPN GKST + ++ A+P IADYPFTTL P+LG + +L + LAD+PGLIEGAH G G+G FLRH+ RT LL+H++D S T +D+ + EL Y+PE + +P IV +NK DLP +KL ++ LRI ++ Sbjct: 44 DVVIVATSSHNTLLDLKYKQHHVAKHGGHGEGSN------RTGRSAPDLTIPVPVGTLVMDSESGEILADLVTEGQEYIVAHGGIGG-------RGNARFATAT------NQAPRYAQSGIPGEERWIRLELKLLADVGIIGLPNVGKSTFISRVSAARPKIADYPFTTLTPHLGVVRYGDDL------NTFVLADIPGLIEGAHEGVGMGIQFLRHIERTALLLHIIDISRDETSTGWHDFEVINSELASYSPELILKPQIVAVNKTDLPITREKL----KDTLRIFAE 304
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBG_GLUOX (GTPase Obg OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=obg PE=3 SV=2) HSP 1 Score: 167.162 bits (422), Expect = 9.490e-48 Identity = 112/258 (43.41%), Postives = 148/258 (57.36%), Query Frame = 1 Query: 49 DTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGT-VVKSKRGKMLADLARHGDEVLVARGGQGGISLLDMPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLG--RLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDASTENPVNDYRTVREELRMYNPEYLERPYIVVLNKID 813 +TL++F F A++GGN G ++ R G AA V I VP+GT + R +LADL G EVL+ RGG GG+ +TN +DK G PGEE + L L+++AD+GLVGLPNAGKSTLL + A+P IADYPFTTL P LG RL+ + E +AD+PGLIEGA G GLG FL H+ R L+H++D + V +R +R+EL Y+PE +P I+VLNK D Sbjct: 54 NTLIDFRYTQHFKARKGGN----GAGSN--RTGAAAANVTINVPVGTQIFDEDRETLLADLDAEGKEVLLCRGGDGGLGNTHFKS---------STNRAPRRADK----GWPGEERWVWLRLKLIADIGLVGLPNAGKSTLLSVASRARPKIADYPFTTLHPQLGVVRLNN---------TEEFVIADIPGLIEGASEGAGLGDRFLGHVERCATLLHLIDGTESQIVKHWRLIRKELEAYDPELAAKPEIIVLNKCD 283
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBG_SYNWW (GTPase Obg OS=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) OX=335541 GN=obg PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.179e-46 Identity = 111/287 (38.68%), Postives = 170/287 (59.23%), Query Frame = 1 Query: 16 GDVVIYADETKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGTVVKS-KRGKMLADLARHGDEVLVARGGQGGISLLDMPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEAT--LADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDAST---ENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDLPEVEDKLPILTQEI 858 +V++ ADE TL++F + F A+RG + + +G +R+ VP+GTV+K + G++LADL G E +VA+ + N + ++++ + + +G+PGEE + L L+++ADVGLVG PNAGKSTL+ ++ A+P IADYPFTTL+PNLG + M T LAD+PGLIEGAH G GLG FLRH+ RTR+++ ++DA+ + V DYR + EL ++NP+ L+RP ++V NK+D+P+ D L E+ Sbjct: 42 ANVILVADEGLKTLMDFKYRRHFKAERGAHGQGKNM------HGAWGQDLRVKVPVGTVIKDDESGEVLADLLLQGQEAVVAK-------GGRGGRGNARFSSAI------NKAPSFSENGEPGEEKWIRLELKLLADVGLVGFPNAGKSTLISRVSAARPKIADYPFTTLVPNLGVV---------MTKERDTFVLADIPGLIEGAHQGLGLGHEFLRHIERTRVILFILDAAQTEGRDVVEDYRILYRELELHNPDLLKRPQLIVANKMDIPDARDNARRLESEL 300
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBG_PERMH (GTPase Obg OS=Persephonella marina (strain DSM 14350 / EX-H1) OX=123214 GN=obg PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.955e-46 Identity = 115/270 (42.59%), Postives = 165/270 (61.11%), Query Frame = 1 Query: 19 DVVIYADETKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGTVVK-SKRGKMLADLARHGDEVLVARGGQGGISLLDMPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDASTE---NPVNDYRTVREELRMYNPEYLERPYIVVLNKIDL 816 DV+I AD++ TL++F K F A+ G + R+G + I VP+GTVVK ++ G++LADL G +V+VA+GG+ + N TS TN D +++ GQPGEE +EL L+++AD+G++G PNAGKSTL+ ++ AKP IADYPFTTL P LG L D Y +AD+PGLIEGA G GLG FLRH+ RT+ L+H++D S + +P+ + + +EL Y+PE +++P IVV NKID+ Sbjct: 44 DVIIMADKSLKTLMDFRYKKHFKAENGQHGSGNN------RHGRNGKDLIIKVPVGTVVKDAETGEILADLIYDGQKVVVAKGGR-------GGRGNAAFKTS--TNQAPDYAEE----GQPGEERWIELELKLIADIGIIGFPNAGKSTLISVLSKAKPKIADYPFTTLTPVLGVLQLD-------YGKSVVIADIPGLIEGASKGAGLGHEFLRHIERTKALIHMIDISDQRERDPIEAFEIINKELEKYSPELVKKPQIVVGNKIDM 287
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBG_LYSSC (GTPase Obg OS=Lysinibacillus sphaericus (strain C3-41) OX=444177 GN=obg PE=3 SV=2) HSP 1 Score: 165.622 bits (418), Expect = 2.526e-46 Identity = 123/309 (39.81%), Postives = 175/309 (56.63%), Query Frame = 1 Query: 19 DVVIYADETKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGTVVKSKR-GKMLADLARHGDEVLVARGGQGGISLLDMPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDAS---TENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDLPEVEDKLPILTQEILRIGSDGTASQQKPTSEIPAQLLSD 933 +VV +E TL++F K F A RG + + G+ +G A + + VP GTVV ++ ++ADL HG ++A+ G+GG + N + T N + S+K G+PG+E+ + L L+V+ADVGLVG P+ GKSTLL ++ AKP I Y FTT++PNLG ++ D + M ADLPGLIEGAH G GLG FLRH+ RTR++VHV+D S +P DY T+ EEL+ YN ERP I+V NK+D+P+ E+ L Q++ G Q P S + Q L + Sbjct: 43 NVVFEVEEGLRTLMDFRYKRHFKAPRGEHGMSKGM------HGKNAEDLIVKVPPGTVVMNEETNAVIADLVEHGQRAVIAKAGRGG-------RGNSRFATP--ANPAPELSEK----GEPGQELNVILELKVLADVGLVGFPSVGKSTLLSVVSAAKPKIGAYHFTTIVPNLGMIETDDHRSFAM-------ADLPGLIEGAHEGVGLGHQFLRHIERTRVIVHVIDMSGMEGRDPYEDYLTINEELKQYNLRLTERPQIIVANKMDMPDAEENLTAFRQKV------GEDVQIFPISAVSRQGLKE 319
BLAST of Psat6g006240.6 vs. DB:Swiss
Match: OBG_DESAA (GTPase Obg OS=Desulfatibacillum alkenivorans (strain AK-01) OX=439235 GN=obg PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 3.927e-46 Identity = 122/284 (42.96%), Postives = 165/284 (58.10%), Query Frame = 1 Query: 19 DVVIYADETKDTLLEFHNKNRFNAKRGGNVDAVGVFTSYLRNGIAAPTVRIPVPLGTVVK-SKRGKMLADLARHGDEVLVARGGQGGISLLDMPKHNRKKTTSLTTNMMRDDSDKVLVHGQPGEEVKLELTLRVVADVGLVGLPNAGKSTLLGAITLAKPDIADYPFTTLMPNLGRLDGDPNLGAGMYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXXDAS---TENPVNDYRTVREELRMYNPEYLERPYIVVLNKIDLPEVEDKLPILTQEI 858 DVV+ A K TL F K+RF A+RGG R+G + I VP+GT+V+ ++ +++ADL+ + +V GG+GG K TS T R D G+ GEE L+L L+++ADVGLVGLPNAGKS+L+ A+T A+P I YPFTTL P+LG L DP Y +AD+PGLIEGA G GLG FLRH+ R RLL+H++DAS E+P+ Y+ + +EL Y+ E+P IVVLNK+DLPE E+ + Q Sbjct: 44 DVVLVATRAKHTLYHFRYKHRFQAQRGGYGSGAN------RHGKNGEDLLIEVPVGTIVRDAETSEIIADLSVEEERCIVCHGGRGG--------KGNKHFTSSTYRAPRFAQD-----GEEGEEKTLKLELKLLADVGLVGLPNAGKSSLITALTAARPKIGAYPFTTLAPSLGVLQ-DP------YGEPVVIADIPGLIEGAAQGAGLGHRFLRHIERNRLLIHLIDASQVTAEDPLASYQAINKELSSYDQALGEKPQIVVLNKMDLPEAEEGACLFKQSC 301 The following BLAST results are available for this feature:
BLAST of Psat6g006240.6 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat6g006240.6_Ps_Cameor_v1a ID=Psat6g006240.6_Ps_Cameor_v1a; Name=Psat6g006240.6; organism=Pisum sativum; type=mRNA; length=4895bpback to top protein sequence of Psat6g006240.6_Ps_Cameor_v1a >Psat6g006240.6_Ps_Cameor_v1a ID=Psat6g006240.6_Ps_Cameor_v1a; Name=Psat6g006240.6_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=336bpback to top mRNA from alignment at chr6LG2:4396394..4401288- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat6g006240.6_Ps_Cameor_v1a ID=Psat6g006240.6_Ps_Cameor_v1a; Name=Psat6g006240.6; organism=Pisum sativum; type=mRNA; length=4895bp; location=Sequence derived from: chr6LG2:4396394..4401288- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr6LG2:4396394..4401288- >Psat6g006240.6_Ps_Cameor_v1a ID=Psat6g006240.6_Ps_Cameor_v1a; Name=Psat6g006240.6; organism=Pisum sativum; type=CDS; length=2016bp; location=Sequence derived from: chr6LG2:4396394..4401288- (Pisum sativumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|