Psat6g006360.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8B_DANRE (Glucose-induced degradation protein 8-B homolog OS=Danio rerio OX=7955 GN=gid8b PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 8.104e-29 Identity = 62/170 (36.47%), Postives = 103/170 (60.59%), Query Frame = 1 Query: 25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531 +N+ I D+ ++++YL+ ++E+AE F +G P D LD++++R KI ++G +AI L L PE+L+ N+ L F L H +EL+R R+ ALEFAQT+L+ G+E++ + ++E +ALLA+ PE SP LL++ RQ+ +N+ +L Y N S Sbjct: 21 NNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRES 189
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_NEMVE (Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis OX=45351 GN=v1g247787 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.789e-28 Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 1 Query: 61 IVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKE-AKYMEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTIL 510 +++ YL+ Y+E+AE F +GT P T LD+++ R KI +G+ +A+ +T +L P+IL+ N+ L F L +EL+R + A+EFAQ + S G+E +Y+E+LE MALLA+ PE SP LL RQ+ A LN IL Sbjct: 29 LIMDYLVTEGYKEAAEKFRIESGTQP-TAPLDSLDDRIKIREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQFSEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAIL 178
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_BOVIN (Glucose-induced degradation protein 8 homolog OS=Bos taurus OX=9913 GN=GID8 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 4.032e-28 Identity = 60/170 (35.29%), Postives = 103/170 (60.59%), Query Frame = 1 Query: 25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531 +N+ + D+ ++++YL+ ++E+AE F +G P D L+ +++R KI ++G +AI L L PE+L+ N+ L F L H +EL+R R+ ALEFAQT+L+ G+E++ + ++E +ALLA+ PE+SP LL++ RQ+ +N+ +L Y N S Sbjct: 20 NNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENRES 188
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8A_DANRE (Glucose-induced degradation protein 8-A homolog OS=Danio rerio OX=7955 GN=gid8a PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 4.119e-28 Identity = 61/170 (35.88%), Postives = 103/170 (60.59%), Query Frame = 1 Query: 25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531 +N+ I D+ ++++YL+ ++E+AE F +G P D LD++++R KI ++G +AI L L PE+L+ N+ L F L H +EL+R R+ ALEFAQ++L+ G+E++ + ++E +ALLA+ PE SP LL++ RQ+ +N+ +L Y N S Sbjct: 20 NNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVD-LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRES 188
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_CHICK (Glucose-induced degradation protein 8 homolog OS=Gallus gallus OX=9031 GN=GID8 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 4.208e-28 Identity = 61/170 (35.88%), Postives = 102/170 (60.00%), Query Frame = 1 Query: 25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531 +N+ I D+ ++++YL+ ++E+AE F +G P D L+ +++R KI ++G +AI L L PE+L+ N+ L F L H +EL+R R+ ALEFAQT+L+ G+E++ + ++E +ALLA+ PE SP LL++ RQ+ +N+ +L Y N S Sbjct: 20 NNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRES 188
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_MOUSE (Glucose-induced degradation protein 8 homolog OS=Mus musculus OX=10090 GN=Gid8 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.084e-27 Identity = 60/170 (35.29%), Postives = 101/170 (59.41%), Query Frame = 1 Query: 25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531 +N+ + D+ ++++YL+ ++E+AE F +G P D L+ +++R KI ++G +AI L L PE+L+ N+ L F L H +EL+R R+ ALEFAQT+L+ G+E++ + ++E +ALLA+ PE SP LL + RQ+ +N+ +L Y N S Sbjct: 20 NNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENRES 188
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_HUMAN (Glucose-induced degradation protein 8 homolog OS=Homo sapiens OX=9606 GN=GID8 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 4.047e-27 Identity = 60/170 (35.29%), Postives = 100/170 (58.82%), Query Frame = 1 Query: 25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531 +N+ + D+ ++++YL+ ++E+AE F +G P D L+ +++R KI ++G +AI L L PE+L+ N+ L F L H +EL+R R+ ALEFAQT+L+ G+E++ + ++E +ALLA+ PE SP LL RQ+ +N+ +L Y N S Sbjct: 20 NNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRES 188
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_ARATH (Protein GID8 homolog OS=Arabidopsis thaliana OX=3702 GN=GID8 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 7.990e-24 Identity = 58/167 (34.73%), Postives = 92/167 (55.09%), Query Frame = 1 Query: 16 RNYDNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAK-YMEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILA 513 + + + + ++D+ +V+++L+ Y E+AE F +GT P D L + R + GN AIE L PEIL+ N +L F L +EL+R K EALEFAQ +L+P G+E + ++E+LE +ALL + + P+ LL L +R + A +N IL Sbjct: 32 KKLNAVKLRKEDMNTLVMNFLVTEGYVEAAEKFQRESGTKPEID-LATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILT 197
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_DICDI (Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279265 PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 6.445e-22 Identity = 57/161 (35.40%), Postives = 90/161 (55.90%), Query Frame = 1 Query: 31 ISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKE-AKYMEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTIL 510 ++I++ D+ +V++YL+ Y+E+A F + T D L ++ R I G+ K IE+ L PEIL+ N L F L +EL+R EAL+FAQ +L+P G+E K++E+LE ++LL +++ SP+ LL RQ+ A LN IL Sbjct: 26 VNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVD-LASIADRMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAIL 185
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: RANBM_ARATH (Ran-binding protein M homolog OS=Arabidopsis thaliana OX=3702 GN=RANBPM PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 7.759e-16 Identity = 65/230 (28.26%), Postives = 115/230 (50.00%), Query Frame = 1 Query: 4 ELDPRNYDNISINEKDVP-----NIVLSYLIHNCYEESAESF-IAGAGTMPPT-----------DCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLH-FVELVRSRKCTEALEFAQTKLSPFGKEAKYMEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAY----------FNLPSYTAMERLVQQATVV---RQCLNEESG 600 E RN ++I + +P +V +YL+H YEE+ ++F +A T+PP D +++RK + G A+ ++L P+I++ +K ++ LL F+ELVR K E + + + +L+ F + + +ED ALLAY++PE S +++ L R+ AD +N IL+ +L S+ +E+L++Q TV R+ LN + G Sbjct: 227 EASERNKQQLAIEKISIPPNIGYGLVKTYLLHYGYEETLDAFNLATKNTVPPIHIDQENAIDEDDSSYALKQRKNLRQLVRNGEIDTALAELQKLYPQIVQDDKSVVCFLLHCQKFIELVRVGKLEEGVNYGRLELAKFVGLTGFQDIVEDCFALLAYEKPEESSVWYFLEDSQRELVADAVNAAILSTNPNKKDVQRSCHLQSH--LEKLLRQLTVCCLERRSLNGDQG 454 The following BLAST results are available for this feature:
BLAST of Psat6g006360.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat6g006360.1_Ps_Cameor_v1a ID=Psat6g006360.1_Ps_Cameor_v1a; Name=Psat6g006360.1; organism=Pisum sativum; type=mRNA; length=3292bpback to top protein sequence of Psat6g006360.1_Ps_Cameor_v1a >Psat6g006360.1_Ps_Cameor_v1a ID=Psat6g006360.1_Ps_Cameor_v1a; Name=Psat6g006360.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=217bpback to top mRNA from alignment at chr6LG2:4439981..4443272- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Psat6g006360.1_Ps_Cameor_v1a ID=Psat6g006360.1_Ps_Cameor_v1a; Name=Psat6g006360.1; organism=Pisum sativum; type=mRNA; length=3292bp; location=Sequence derived from: chr6LG2:4439981..4443272- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr6LG2:4439981..4443272- >Psat6g006360.1_Ps_Cameor_v1a ID=Psat6g006360.1_Ps_Cameor_v1a; Name=Psat6g006360.1; organism=Pisum sativum; type=CDS; length=1302bp; location=Sequence derived from: chr6LG2:4439981..4443272- (Pisum sativumback to top |