Psat6g006360.1

Transcript Overview
NamePsat6g006360.1
Unique NamePsat6g006360.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length3292
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr6LG2supercontigchr6LG2:4439981..4443272 -Pisum sativum Cameor genome v1an/a
chr6LG2supercontigchr6LG2:4439981..4443272 -Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
crpsL366Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipsL401Cicer arietinum ICC 4958 genome v2Cicer arietinum
capsL340Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
psvuR651Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR580Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR700Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpsL0304Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspsL232Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pszwsR594Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR649Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR634Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvrvR508Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvuaR599Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR715Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpsL343Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpsL597Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpsL320Cicer arietinum
psvvaR756Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR583Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR592Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pspvfR606Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
psvunR596Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
psvunR623Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR737Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.02G027000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan09g027800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Tiffany.R1.3g190880.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_10772Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigan.02G032500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun09g249500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Phvul.009G013100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_08659.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
evm.model.Chr09.1274Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
PvulFLAVERTChr09.194Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigun08g011250.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Hedin2.R1.3g233880.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg35141.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_12367Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.001G010600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun09g249500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
XM_058869356.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Va04G069410.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cr_07755.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
PvulFLAVERTChr01.1000094Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014644493.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Psat06G0015500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat6g006360Psat6g006360_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat6g006360.1Psat6g006360.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat6g006360.1_Ps_Cameor_v1aPsat6g006360.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g006360.1.five_prime_utr1Psat6g006360.1.five_prime_utr1_Ps_Cameor_v1aPisum sativumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g006360.1.exon1Psat6g006360.1.exon1_Ps_Cameor_v1aPisum sativumexon
Psat6g006360.1.exon2Psat6g006360.1.exon2_Ps_Cameor_v1aPisum sativumexon
Psat6g006360.1.exon3Psat6g006360.1.exon3_Ps_Cameor_v1aPisum sativumexon
Psat6g006360.1.exon4Psat6g006360.1.exon4_Ps_Cameor_v1aPisum sativumexon
Psat6g006360.1.exon5Psat6g006360.1.exon5_Ps_Cameor_v1aPisum sativumexon
Psat6g006360.1.exon6Psat6g006360.1.exon6_Ps_Cameor_v1aPisum sativumexon
Psat6g006360.1.exon7Psat6g006360.1.exon7_Ps_Cameor_v1aPisum sativumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g006360.1.cds1Psat6g006360.1.cds1_Ps_Cameor_v1aPisum sativumCDS
Psat6g006360.1.cds2Psat6g006360.1.cds2_Ps_Cameor_v1aPisum sativumCDS
Psat6g006360.1.cds3Psat6g006360.1.cds3_Ps_Cameor_v1aPisum sativumCDS
Psat6g006360.1.cds4Psat6g006360.1.cds4_Ps_Cameor_v1aPisum sativumCDS
Psat6g006360.1.cds5Psat6g006360.1.cds5_Ps_Cameor_v1aPisum sativumCDS
Psat6g006360.1.cds6Psat6g006360.1.cds6_Ps_Cameor_v1aPisum sativumCDS
Psat6g006360.1.cds7Psat6g006360.1.cds7_Ps_Cameor_v1aPisum sativumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g006360.1.three_prime_utr1Psat6g006360.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8B_DANRE (Glucose-induced degradation protein 8-B homolog OS=Danio rerio OX=7955 GN=gid8b PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.104e-29
Identity = 62/170 (36.47%), Postives = 103/170 (60.59%), Query Frame = 1 
Query:   25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531
            +N+ I   D+  ++++YL+   ++E+AE F   +G  P  D LD++++R KI    ++G   +AI L   L PE+L+ N+ L F L   H +EL+R R+   ALEFAQT+L+  G+E++  + ++E  +ALLA+  PE SP   LL++  RQ+    +N+ +L Y N  S
Sbjct:   21 NNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRES 189
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_NEMVE (Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis OX=45351 GN=v1g247787 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.789e-28
Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 1 
Query:   61 IVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKE-AKYMEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTIL 510
            +++ YL+   Y+E+AE F   +GT P T  LD+++ R KI     +G+  +A+ +T +L P+IL+ N+ L F L     +EL+R +    A+EFAQ + S  G+E  +Y+E+LE  MALLA+  PE SP   LL    RQ+ A  LN  IL
Sbjct:   29 LIMDYLVTEGYKEAAEKFRIESGTQP-TAPLDSLDDRIKIREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQFSEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAIL 178
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_BOVIN (Glucose-induced degradation protein 8 homolog OS=Bos taurus OX=9913 GN=GID8 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.032e-28
Identity = 60/170 (35.29%), Postives = 103/170 (60.59%), Query Frame = 1 
Query:   25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531
            +N+ +   D+  ++++YL+   ++E+AE F   +G  P  D L+ +++R KI    ++G   +AI L   L PE+L+ N+ L F L   H +EL+R R+   ALEFAQT+L+  G+E++  + ++E  +ALLA+  PE+SP   LL++  RQ+    +N+ +L Y N  S
Sbjct:   20 NNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENRES 188
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8A_DANRE (Glucose-induced degradation protein 8-A homolog OS=Danio rerio OX=7955 GN=gid8a PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.119e-28
Identity = 61/170 (35.88%), Postives = 103/170 (60.59%), Query Frame = 1 
Query:   25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531
            +N+ I   D+  ++++YL+   ++E+AE F   +G  P  D LD++++R KI    ++G   +AI L   L PE+L+ N+ L F L   H +EL+R R+   ALEFAQ++L+  G+E++  + ++E  +ALLA+  PE SP   LL++  RQ+    +N+ +L Y N  S
Sbjct:   20 NNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVD-LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRES 188
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_CHICK (Glucose-induced degradation protein 8 homolog OS=Gallus gallus OX=9031 GN=GID8 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.208e-28
Identity = 61/170 (35.88%), Postives = 102/170 (60.00%), Query Frame = 1 
Query:   25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531
            +N+ I   D+  ++++YL+   ++E+AE F   +G  P  D L+ +++R KI    ++G   +AI L   L PE+L+ N+ L F L   H +EL+R R+   ALEFAQT+L+  G+E++  + ++E  +ALLA+  PE SP   LL++  RQ+    +N+ +L Y N  S
Sbjct:   20 NNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRES 188
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_MOUSE (Glucose-induced degradation protein 8 homolog OS=Mus musculus OX=10090 GN=Gid8 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.084e-27
Identity = 60/170 (35.29%), Postives = 101/170 (59.41%), Query Frame = 1 
Query:   25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531
            +N+ +   D+  ++++YL+   ++E+AE F   +G  P  D L+ +++R KI    ++G   +AI L   L PE+L+ N+ L F L   H +EL+R R+   ALEFAQT+L+  G+E++  + ++E  +ALLA+  PE SP   LL +  RQ+    +N+ +L Y N  S
Sbjct:   20 NNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENRES 188
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_HUMAN (Glucose-induced degradation protein 8 homolog OS=Homo sapiens OX=9606 GN=GID8 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.047e-27
Identity = 60/170 (35.29%), Postives = 100/170 (58.82%), Query Frame = 1 
Query:   25 DNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAKY-MEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAYFNLPS 531
            +N+ +   D+  ++++YL+   ++E+AE F   +G  P  D L+ +++R KI    ++G   +AI L   L PE+L+ N+ L F L   H +EL+R R+   ALEFAQT+L+  G+E++  + ++E  +ALLA+  PE SP   LL    RQ+    +N+ +L Y N  S
Sbjct:   20 NNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVD-LETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRES 188
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_ARATH (Protein GID8 homolog OS=Arabidopsis thaliana OX=3702 GN=GID8 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.990e-24
Identity = 58/167 (34.73%), Postives = 92/167 (55.09%), Query Frame = 1 
Query:   16 RNYDNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEAK-YMEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILA 513
            +  + + + ++D+  +V+++L+   Y E+AE F   +GT P  D L  +  R  +      GN   AIE    L PEIL+ N +L F L     +EL+R  K  EALEFAQ +L+P G+E + ++E+LE  +ALL + +    P+  LL L +R + A  +N  IL 
Sbjct:   32 KKLNAVKLRKEDMNTLVMNFLVTEGYVEAAEKFQRESGTKPEID-LATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILT 197
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: GID8_DICDI (Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279265 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.445e-22
Identity = 57/161 (35.40%), Postives = 90/161 (55.90%), Query Frame = 1 
Query:   31 ISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKE-AKYMEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTIL 510
            ++I++ D+  +V++YL+   Y+E+A  F   + T    D L ++  R  I      G+  K IE+   L PEIL+ N  L F L     +EL+R     EAL+FAQ +L+P G+E  K++E+LE  ++LL +++   SP+  LL    RQ+ A  LN  IL
Sbjct:   26 VNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVD-LASIADRMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAIL 185
[Close]
BLAST of Psat6g006360.1 vs. DB:Swiss
Match: RANBM_ARATH (Ran-binding protein M homolog OS=Arabidopsis thaliana OX=3702 GN=RANBPM PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.759e-16
Identity = 65/230 (28.26%), Postives = 115/230 (50.00%), Query Frame = 1 
Query:    4 ELDPRNYDNISINEKDVP-----NIVLSYLIHNCYEESAESF-IAGAGTMPPT-----------DCLDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLH-FVELVRSRKCTEALEFAQTKLSPFGKEAKYMEKLEDFMALLAYKEPENSPMFHLLSLDYRQEFADNLNRTILAY----------FNLPSYTAMERLVQQATVV---RQCLNEESG 600
            E   RN   ++I +  +P      +V +YL+H  YEE+ ++F +A   T+PP            D    +++RK +      G    A+   ++L P+I++ +K ++  LL    F+ELVR  K  E + + + +L+ F     + + +ED  ALLAY++PE S +++ L    R+  AD +N  IL+            +L S+  +E+L++Q TV    R+ LN + G
Sbjct:  227 EASERNKQQLAIEKISIPPNIGYGLVKTYLLHYGYEETLDAFNLATKNTVPPIHIDQENAIDEDDSSYALKQRKNLRQLVRNGEIDTALAELQKLYPQIVQDDKSVVCFLLHCQKFIELVRVGKLEEGVNYGRLELAKFVGLTGFQDIVEDCFALLAYEKPEESSVWYFLEDSQRELVADAVNAAILSTNPNKKDVQRSCHLQSH--LEKLLRQLTVCCLERRSLNGDQG 454
The following BLAST results are available for this feature:
BLAST of Psat6g006360.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
GID8B_DANRE8.104e-2936.47Glucose-induced degradation protein 8-B homolog OS... [more]
GID8_NEMVE2.789e-2839.74Glucose-induced degradation protein 8 homolog OS=N... [more]
GID8_BOVIN4.032e-2835.29Glucose-induced degradation protein 8 homolog OS=B... [more]
GID8A_DANRE4.119e-2835.88Glucose-induced degradation protein 8-A homolog OS... [more]
GID8_CHICK4.208e-2835.88Glucose-induced degradation protein 8 homolog OS=G... [more]
GID8_MOUSE1.084e-2735.29Glucose-induced degradation protein 8 homolog OS=M... [more]
GID8_HUMAN4.047e-2735.29Glucose-induced degradation protein 8 homolog OS=H... [more]
GID8_ARATH7.990e-2434.73Protein GID8 homolog OS=Arabidopsis thaliana OX=37... [more]
GID8_DICDI6.445e-2235.40Glucose-induced degradation protein 8 homolog OS=D... [more]
RANBM_ARATH7.759e-1628.26Ran-binding protein M homolog OS=Arabidopsis thali... [more]
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InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013144CRA domainSMARTSM00757toby_final6coord: 106..201
e-value: 5.5E-28
score: 109.0
IPR006595CTLH, C-terminal LisH motifSMARTSM00668ctlhcoord: 53..110
e-value: 8.3E-12
score: 55.2
IPR006595CTLH, C-terminal LisH motifPROSITEPS50897CTLHcoord: 53..110
score: 12.807
IPR024964CTLH/CRA C-terminal to LisH motif domainPFAMPF10607CLTHcoord: 54..191
e-value: 2.2E-32
score: 112.0
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 14..46
score: 8.506

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat6g006360.1_Ps_Cameor_v1a ID=Psat6g006360.1_Ps_Cameor_v1a; Name=Psat6g006360.1; organism=Pisum sativum; type=mRNA; length=3292bp
AAATAAGTTAAATTTTATTTAGATAAATGTTAAACATTCTTAACAAAATT
TACGTGAATAGATAAATTTAATTTAAGTTAAAAGTTGAGGTTAGTGTAAT
ATATGAGTGCCGTGGATTGTATGCTCTCTTCTCCTTCTTAGTCGTGACAC
ACTGATATATTCCAAGACTCCCAATTCTTCGCCGGTTCAATTCAACCATG
GAACTTGATCCTCGCAACTACGATAACATTGTATGTATTCTATCTATCTC
TTATCACCCTTTCAATCACACTTTCCGATTTTAGTTCCCAGCCCTAGAAT
CAATCCCCACTCAAATCACTTCATGCTTTCTTACTCTTAAACCCTAGAAT
TTTTACTCAATTCATGAATTCTTACTGCTCTTTGCAATGATGTGCTTCAA
ATATCATGTTTCCAAGATGTTATTTTTCTGAATTTCTATAAAACTCAACC
TAATCAGGATTTGTTATTATGATGGATCCAGTTAATATTGGCATTTTAGG
GTTTTATTGGGTTTCTGTCAACAACTATCATTTTCTGGTTATTATGTTTA
TTCTCTTGACATTCACAAACTTTGTATTGTAACTTAGTTCTGTGAATATT
TTGACTTTATGTTTGTTTTTATTTACAGTCTATAAATGAAAAAGATGTCC
CCAACATTGTTCTCTCATACCTTATACATAACTGCTACGAAGAATCCGCC
GAGTCGTTCATTGCCGGCGCTGGGACAATGCCGCCTACAGATTGTTTGGA
TAACATGGAGAAAAGAAAAAGTATGTTTATTGTTGTTTTTCTGTTTTGAA
GATTGGTTCAAGACATTCAGTTACTTGTTGTCCGAATGCCGTTTTATTTG
CTTCAGTTCTTAAAACTTTGCTTGATATTAAAATTTGTAACTATGATATA
AGACATTAATGTTGGATTACTCAACCTTATATGGGAGGGATACTAGTGGT
GGAGCTTGTTCGAAATTTATGAGGGGGCCAAAATCGAAATGTATAAAGAA
TATATATGATAGTATTGTCAATTATTTCCAACATTAGTTTACTTGTCTAG
TGCAGTGTTTTTAATAGCGGGTCGTGGAAAATAGTTGTTCACCAAAAAAC
TGATATGAGAAATATCGGATAGCGTAGTAGGGGGCAAATAGCAGAAGCCG
CAAAGCGGTTAAAAATTCTAGTGTCTACACAGACTGAGTTCAAGCCTGAT
CTTAAACAATTTTCCCAAGGAAATGTGAAAAAGGGATTTATTTATGCCAT
AAAAAAAACTTAAAATTGGGTTTCAAGGCTTGAACATGGAGCCCGAAAGC
TACGAAACAGATACTGAAGTACTTTTGGGCAGGCCATAGCCTACCCTAGT
CCACACTAAGATTCACAACTGATACTGAGGTACTTTTTGCTCTTATTGCT
ACTTGAAACATACGCCGGTTTTATACAATAGCGTGTGGCAATTTTGCTTA
CGAATGTGTTTTTCCCTCATTCGTACCCTTGCGTTAAGATACCAAATTGC
CTTCTCTCCTCACTTTGATTACAGAAGATGGCGGGAGTAGTCCTCCTACT
ATATATGCAGTTAATTGTTTTCAATTGGAGGATATGTTAGGTTGTAAAGC
TTCCATGACAGTAAATTTCATCTGTCTTTAGAAATCATTCACTATGCAAT
GGAGGGAAATGCACTTAAGGCTATTGAGCTAACTGAGCAGCTGACACCGG
AAATTCTGGAGAAGAATAAGGACTTGCTATTTGACCTTTTAAGCCTTCAT
TTTGTAGAGCTTGTTCGCTCTAGGAAATGGTAAGATGAGATTAGTTTTTT
ACTCCTATTAAAACGTTGTGGATTTTTTTCCTTAATAGAATCTCATGTTA
TTGCCAGCACAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGCCCTTTT
GGAAAGGAGGCAAAATATATGGAAAAACTTGAAGTATGTTTGCTTTTTGC
ATAATGATTCAGTATTACATATTTGCGTGCGTTTGTGTGTGTTTCAAGGT
TTAAGCGACTATAAAGCTATCCTTCCTTATTGCAGGATTTTATGGCCCTT
CTTGCTTATAAGGAGCCAGAGAATTCTCCAATGTTTCATTTACTTAGCTT
GGATTATCGTCAAGAGTTTGCAGATAATTTGAACCGAACTATCCTTGGTT
GGTTAACTTGACTATACTCCTTGTATAATATATATTTGATTACAAATCTC
AATACATTATTTTACCCCTATTATATATTATATATGATGTATAATTGTCG
TTTTCTTTTTCCATTGGCGATTGGCAGCATACTTTAACCTTCCCAGCTAC
ACAGCAATGGAGAGGCTTGTACAGCAGGCGACAGTAGTTAGACAGTGCTT
AAATGAGGAATCTGGAAAGGTAATAGGCAATTGATGATTTCCCTCTTTCA
CTTTAACCTTCCCAGCTACACAGCAATGGAGAGGCTTGTACAGCAGGCGA
CAGTAGTTAGACAGTGCTTAAATGAGGAATCTGGAAAGGTAATAGGCAAT
TGATGATTTCCCTCTTTCATCAGCTTCAGGTTTTGATGGCTGCATATGTT
GGCTAGTTTTTTATGCCATAGCTTGTTATGCAATTTAAGCCGACAGAGAT
TTCTGTCTAACTGAGTAACCATTTAATTGGCCGGCATTATAGAGTGAAAG
AACTTGTGAAAGTCCACGAATTACTTAATGTTCAAACTGATTCCCTATTC
ACTCTCTGCAGGACGGGCCTCGACCGTTTTCTTTGAAAGAATTTCTTAAA
AGGCGATGAGAAAGCAATTACATATCTGCCAGAAATTGTGGAGTGAAGCA
CAATTACCTTATGCACATTTATCTGATACCTCTGTTGTCAATTGTTGGAT
TGGTGTATGATTGATCATAGGTGTAATGTTGTCTGAATGCTATACTTGTA
TAAATTTTTTCGTATCAGGCTATCTAGATCTTTCTAGTCTCACTGCAATA
GTACAAGTTACAAGTGTTGATGAATATGTGGGAAAATACAATCGGTATGC
ATCTTTTGGCTGCATGTTTTTGATGTAAGAGGAAGAGTATGACAAGTTTA
GGGTCAGTGGTTCAGTCTCTTCAATACTTTTCAAGCAATCTGTAAAAGTA
TATGCGCTTGGGGTATAGCCTGAAACATTTTTTTTGTGTGGACCAATGAT
ATGTCCGAAGTTCAAATTTTCAAATATTTTGTTGGTTATTGTAATGTTTT
TGCTAAAAATCTATCATCATAAATGCCTCTACAGTCCACAAAGTAAAGTT
GTTTCAGAGTTGAGGCATTTTCAAAGTGGAAGACTCCAACCA
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protein sequence of Psat6g006360.1_Ps_Cameor_v1a

>Psat6g006360.1_Ps_Cameor_v1a ID=Psat6g006360.1_Ps_Cameor_v1a; Name=Psat6g006360.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=217bp
MELDPRNYDNISINEKDVPNIVLSYLIHNCYEESAESFIAGAGTMPPTDC
LDNMEKRKKIIHYAMEGNALKAIELTEQLTPEILEKNKDLLFDLLSLHFV
ELVRSRKCTEALEFAQTKLSPFGKEAKYMEKLEDFMALLAYKEPENSPMF
HLLSLDYRQEFADNLNRTILAYFNLPSYTAMERLVQQATVVRQCLNEESG
KDGPRPFSLKEFLKRR*
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mRNA from alignment at chr6LG2:4439981..4443272-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat6g006360.1_Ps_Cameor_v1a ID=Psat6g006360.1_Ps_Cameor_v1a; Name=Psat6g006360.1; organism=Pisum sativum; type=mRNA; length=3292bp; location=Sequence derived from: chr6LG2:4439981..4443272- (Pisum sativum
AAATAAGTTAAATTTTATTTAGATAAATGTTAAACATTCTTAACAAAATT
TACGTGAATAGATAAATTTAATTTAAGTTAAAAGTTGAGGTTAGTGTAAT
ATATGAGTGCCGTGGATTGTATGCTCTCTTCTCCTTCTTAGTCGTGACAC
ACTGATATATTCCAAGACTCCCAATTCTTCGCCGGTTCAATTCAACCATG
GAACTTGATCCTCGCAACTACGATAACATTGTATGTATTCTATCTATCTC
TTATCACCCTTTCAATCACACTTTCCGATTTTAGTTCCCAGCCCTAGAAT
CAATCCCCACTCAAATCACTTCATGCTTTCTTACTCTTAAACCCTAGAAT
TTTTACTCAATTCATGAATTCTTACTGCTCTTTGCAATGATGTGCTTCAA
ATATCATGTTTCCAAGATGTTATTTTTCTGAATTTCTATAAAACTCAACC
TAATCAGGATTTGTTATTATGATGGATCCAGTTAATATTGGCATTTTAGG
GTTTTATTGGGTTTCTGTCAACAACTATCATTTTCTGGTTATTATGTTTA
TTCTCTTGACATTCACAAACTTTGTATTGTAACTTAGTTCTGTGAATATT
TTGACTTTATGTTTGTTTTTATTTACAGTCTATAAATGAAAAAGATGTCC
CCAACATTGTTCTCTCATACCTTATACATAACTGCTACGAAGAATCCGCC
GAGTCGTTCATTGCCGGCGCTGGGACAATGCCGCCTACAGATTGTTTGGA
TAACATGGAGAAAAGAAAAAGTATGTTTATTGTTGTTTTTCTGTTTTGAA
GATTGGTTCAAGACATTCAGTTACTTGTTGTCCGAATGCCGTTTTATTTG
CTTCAGTTCTTAAAACTTTGCTTGATATTAAAATTTGTAACTATGATATA
AGACATTAATGTTGGATTACTCAACCTTATATGGGAGGGATACTAGTGGT
GGAGCTTGTTCGAAATTTATGAGGGGGCCAAAATCGAAATGTATAAAGAA
TATATATGATAGTATTGTCAATTATTTCCAACATTAGTTTACTTGTCTAG
TGCAGTGTTTTTAATAGCGGGTCGTGGAAAATAGTTGTTCACCAAAAAAC
TGATATGAGAAATATCGGATAGCGTAGTAGGGGGCAAATAGCAGAAGCCG
CAAAGCGGTTAAAAATTCTAGTGTCTACACAGACTGAGTTCAAGCCTGAT
CTTAAACAATTTTCCCAAGGAAATGTGAAAAAGGGATTTATTTATGCCAT
AAAAAAAACTTAAAATTGGGTTTCAAGGCTTGAACATGGAGCCCGAAAGC
TACGAAACAGATACTGAAGTACTTTTGGGCAGGCCATAGCCTACCCTAGT
CCACACTAAGATTCACAACTGATACTGAGGTACTTTTTGCTCTTATTGCT
ACTTGAAACATACGCCGGTTTTATACAATAGCGTGTGGCAATTTTGCTTA
CGAATGTGTTTTTCCCTCATTCGTACCCTTGCGTTAAGATACCAAATTGC
CTTCTCTCCTCACTTTGATTACAGAAGATGGCGGGAGTAGTCCTCCTACT
ATATATGCAGTTAATTGTTTTCAATTGGAGGATATGTTAGGTTGTAAAGC
TTCCATGACAGTAAATTTCATCTGTCTTTAGAAATCATTCACTATGCAAT
GGAGGGAAATGCACTTAAGGCTATTGAGCTAACTGAGCAGCTGACACCGG
AAATTCTGGAGAAGAATAAGGACTTGCTATTTGACCTTTTAAGCCTTCAT
TTTGTAGAGCTTGTTCGCTCTAGGAAATGGTAAGATGAGATTAGTTTTTT
ACTCCTATTAAAACGTTGTGGATTTTTTTCCTTAATAGAATCTCATGTTA
TTGCCAGCACAGAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGCCCTTTT
GGAAAGGAGGCAAAATATATGGAAAAACTTGAAGTATGTTTGCTTTTTGC
ATAATGATTCAGTATTACATATTTGCGTGCGTTTGTGTGTGTTTCAAGGT
TTAAGCGACTATAAAGCTATCCTTCCTTATTGCAGGATTTTATGGCCCTT
CTTGCTTATAAGGAGCCAGAGAATTCTCCAATGTTTCATTTACTTAGCTT
GGATTATCGTCAAGAGTTTGCAGATAATTTGAACCGAACTATCCTTGGTT
GGTTAACTTGACTATACTCCTTGTATAATATATATTTGATTACAAATCTC
AATACATTATTTTACCCCTATTATATATTATATATGATGTATAATTGTCG
TTTTCTTTTTCCATTGGCGATTGGCAGCATACTTTAACCTTCCCAGCTAC
ACAGCAATGGAGAGGCTTGTACAGCAGGCGACAGTAGTTAGACAGTGCTT
AAATGAGGAATCTGGAAAGGTAATAGGCAATTGATGATTTCCCTCTTTCA
CTTTAACCTTCCCAGCTACACAGCAATGGAGAGGCTTGTACAGCAGGCGA
CAGTAGTTAGACAGTGCTTAAATGAGGAATCTGGAAAGGTAATAGGCAAT
TGATGATTTCCCTCTTTCATCAGCTTCAGGTTTTGATGGCTGCATATGTT
GGCTAGTTTTTTATGCCATAGCTTGTTATGCAATTTAAGCCGACAGAGAT
TTCTGTCTAACTGAGTAACCATTTAATTGGCCGGCATTATAGAGTGAAAG
AACTTGTGAAAGTCCACGAATTACTTAATGTTCAAACTGATTCCCTATTC
ACTCTCTGCAGGACGGGCCTCGACCGTTTTCTTTGAAAGAATTTCTTAAA
AGGCGATGAGAAAGCAATTACATATCTGCCAGAAATTGTGGAGTGAAGCA
CAATTACCTTATGCACATTTATCTGATACCTCTGTTGTCAATTGTTGGAT
TGGTGTATGATTGATCATAGGTGTAATGTTGTCTGAATGCTATACTTGTA
TAAATTTTTTCGTATCAGGCTATCTAGATCTTTCTAGTCTCACTGCAATA
GTACAAGTTACAAGTGTTGATGAATATGTGGGAAAATACAATCGGTATGC
ATCTTTTGGCTGCATGTTTTTGATGTAAGAGGAAGAGTATGACAAGTTTA
GGGTCAGTGGTTCAGTCTCTTCAATACTTTTCAAGCAATCTGTAAAAGTA
TATGCGCTTGGGGTATAGCCTGAAACATTTTTTTTGTGTGGACCAATGAT
ATGTCCGAAGTTCAAATTTTCAAATATTTTGTTGGTTATTGTAATGTTTT
TGCTAAAAATCTATCATCATAAATGCCTCTACAGTCCACAAAGTAAAGTT
GTTTCAGAGTTGAGGCATTTTCAAAGTGGAAGACTCCAACCA
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Coding sequence (CDS) from alignment at chr6LG2:4439981..4443272-

>Psat6g006360.1_Ps_Cameor_v1a ID=Psat6g006360.1_Ps_Cameor_v1a; Name=Psat6g006360.1; organism=Pisum sativum; type=CDS; length=1302bp; location=Sequence derived from: chr6LG2:4439981..4443272- (Pisum sativum
ATGGAACTTGATCCTCGCAACTACGATAACATTATGGAACTTGATCCTCG
CAACTACGATAACATTTCTATAAATGAAAAAGATGTCCCCAACATTGTTC
TCTCATACCTTATACATAACTGCTACGAAGAATCCGCCGAGTCGTTCATT
GCCGGCGCTGGGACAATGCCGCCTACAGATTGTTTGGATAACATGGAGAA
AAGAAAAATCTATAAATGAAAAAGATGTCCCCAACATTGTTCTCTCATAC
CTTATACATAACTGCTACGAAGAATCCGCCGAGTCGTTCATTGCCGGCGC
TGGGACAATGCCGCCTACAGATTGTTTGGATAACATGGAGAAAAGAAAAA
AAATCATTCACTATGCAATGGAGGGAAATGCACTTAAGGCTATTGAGCTA
ACTGAGCAGCTGACACCGGAAATTCTGGAGAAGAATAAGGACTTGCTATT
TGACCTTTTAAGCCTTCATTTTGTAGAGCTTGTTCGCTCTAGGAAATGAA
ATCATTCACTATGCAATGGAGGGAAATGCACTTAAGGCTATTGAGCTAAC
TGAGCAGCTGACACCGGAAATTCTGGAGAAGAATAAGGACTTGCTATTTG
ACCTTTTAAGCCTTCATTTTGTAGAGCTTGTTCGCTCTAGGAAATGCACA
GAAGCTTTGGAGTTTGCTCAGACCAAGTTGAGCCCTTTTGGAAAGGAGGC
AAAATATATGGAAAAACTTGAACACAGAAGCTTTGGAGTTTGCTCAGACC
AAGTTGAGCCCTTTTGGAAAGGAGGCAAAATATATGGAAAAACTTGAAGA
TTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAATTCTCCAATGTTTC
ATTTACTTAGCTTGGATTATCGTCAAGAGTTTGCAGATAATTTGAACCGA
ACTATCCTTGGATTTTATGGCCCTTCTTGCTTATAAGGAGCCAGAGAATT
CTCCAATGTTTCATTTACTTAGCTTGGATTATCGTCAAGAGTTTGCAGAT
AATTTGAACCGAACTATCCTTGCATACTTTAACCTTCCCAGCTACACAGC
AATGGAGAGGCTTGTACAGCAGGCGACAGTAGTTAGACAGTGCTTAAATG
AGGAATCTGGAAAGCATACTTTAACCTTCCCAGCTACACAGCAATGGAGA
GGCTTGTACAGCAGGCGACAGTAGTTAGACAGTGCTTAAATGAGGAATCT
GGAAAGGACGGGCCTCGACCGTTTTCTTTGAAAGAATTTCTTAAAAGGCG
ATGAGACGGGCCTCGACCGTTTTCTTTGAAAGAATTTCTTAAAAGGCGAT
GA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013144CRA_dom
IPR006595CTLH_C
IPR024964CTLH/CRA
IPR006594LisH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding