rna-KK1_019880
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2) HSP 1 Score: 311.227 bits (796), Expect = 3.325e-108 Identity = 146/160 (91.25%), Postives = 154/160 (96.25%), Query Frame = 1 Query: 7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 486 VKYS+EPDN TKSCKARG+DLRVHFKNTRETA AIRKLPL+KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE Sbjct: 2 VKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 3.449e-108 Identity = 146/161 (90.68%), Postives = 154/161 (95.65%), Query Frame = 1 Query: 7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEV 489 VKYS+EP NPTKS KA G DLRVHFKNTRETAFA+RKLPL KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE Sbjct: 2 VKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEA 162
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.669e-107 Identity = 147/160 (91.88%), Postives = 153/160 (95.62%), Query Frame = 1 Query: 7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 486 VKYS+EPDN TKSCKARGADLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE Sbjct: 2 VKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 301.597 bits (771), Expect = 1.701e-104 Identity = 143/161 (88.82%), Postives = 149/161 (92.55%), Query Frame = 1 Query: 7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEV 489 VKYS +P NPTKS KA G DLRVHFKNTRETAFA+RK+PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE Sbjct: 2 VKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEA 162
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 4.052e-103 Identity = 141/161 (87.58%), Postives = 149/161 (92.55%), Query Frame = 1 Query: 7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEV 489 VKYSR+P NPTKS KA G DLRVHFKNTRETAFA+R++PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE Sbjct: 2 VKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEA 162
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryna carnea OX=6096 GN=RPL17 PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.339e-79 Identity = 118/157 (75.16%), Postives = 136/157 (86.62%), Query Frame = 1 Query: 10 KYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKN-RHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPV 477 KYS +P+NP KSCKARG+ LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPFRRFCGGVGR AQAK +H+ QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A RRRTYRAHGRINPYMSSPCHIE+I+SEKE+ V Sbjct: 3 KYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFKHT--QGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVSEKEQVV 157
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens OX=9606 GN=RPL17 PE=1 SV=3) HSP 1 Score: 232.261 bits (591), Expect = 8.485e-77 Identity = 111/159 (69.81%), Postives = 134/159 (84.28%), Query Frame = 1 Query: 7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 483 V+YS +P+NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV KQ +PFRR+ GGVGR AQAK + QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K Sbjct: 2 VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus OX=9685 GN=RPL17 PE=2 SV=3) HSP 1 Score: 232.261 bits (591), Expect = 8.485e-77 Identity = 111/159 (69.81%), Postives = 134/159 (84.28%), Query Frame = 1 Query: 7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 483 V+YS +P+NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV KQ +PFRR+ GGVGR AQAK + QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K Sbjct: 2 VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus OX=10116 GN=Rpl17 PE=2 SV=3) HSP 1 Score: 231.491 bits (589), Expect = 1.617e-76 Identity = 111/159 (69.81%), Postives = 134/159 (84.28%), Query Frame = 1 Query: 7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 483 V+YS +P+NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV KQ +PFRR+ GGVGR AQAK + QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K Sbjct: 2 VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus OX=9913 GN=RPL17 PE=2 SV=3) HSP 1 Score: 231.491 bits (589), Expect = 1.617e-76 Identity = 111/159 (69.81%), Postives = 134/159 (84.28%), Query Frame = 1 Query: 7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 483 V+YS +P+NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV KQ +PFRR+ GGVGR AQAK + QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K Sbjct: 2 VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159 The following BLAST results are available for this feature:
BLAST of rna-KK1_019880 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019880_Cc_Asha_v1.0 ID=rna-KK1_019880_Cc_Asha_v1.0; Name=rna-KK1_019880; organism=Cajanus cajan; type=mRNA; length=654bpback to top protein sequence of rna-KK1_019880_Cc_Asha_v1.0 >rna-KK1_019880_Cc_Asha_v1.0 ID=rna-KK1_019880_Cc_Asha_v1.0; Name=rna-KK1_019880_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=217bpback to top mRNA from alignment at Chr_1-CM003603.1:1504911..1506594+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019880_Cc_Asha_v1.0 ID=rna-KK1_019880_Cc_Asha_v1.0; Name=rna-KK1_019880; organism=Cajanus cajan; type=mRNA; length=1684bp; location=Sequence derived from: Chr_1-CM003603.1:1504911..1506594+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1504911..1506594+ >rna-KK1_019880_Cc_Asha_v1.0 ID=rna-KK1_019880_Cc_Asha_v1.0; Name=rna-KK1_019880; organism=Cajanus cajan; type=CDS; length=1308bp; location=Sequence derived from: Chr_1-CM003603.1:1504911..1506594+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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