rna-KK1_019880

Transcript Overview
Namerna-KK1_019880
Unique Namerna-KK1_019880_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length654
Product60S ribosomal protein L17
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1504911..1506594 +Cajanus cajan Asha genome v1.0n/a
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1504911..1506594 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0011Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0043Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR022Pisum sativum Cameor genome v1aPisum sativum
ccpsR024Pisum sativum Cameor genome v1aPisum sativum
ccpsR033Pisum sativum Cameor genome v1aPisum sativum
ccccR001Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0004Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0019Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0003Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0016Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccL0518Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0673Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0156Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0552Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0721Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0002Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0005Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0259Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0379Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0433Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0833Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0912Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0007Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0010Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0036Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0010Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0039Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0014Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0010Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0003Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0042Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0020Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canccL0553Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0728Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0331Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0697Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0594Cicer arietinum
carccL0777Cicer arietinum
ccccaR0000Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0054Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0009Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0042Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr03.3732Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.6g045560.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va03G085200.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.2g111640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_004502245.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.001G261000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_03615Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr01.2315Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan01g103800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_11339Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_33004Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_07598Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_20473Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-TanjilR_11007Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat7g077760.1Pisum sativum Cameor genome v1aPisum sativum
Vum_01G01580.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_014637739.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-TanjilR_16792Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va01G040200.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.6g054800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg30417.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
jg53558.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.002G174200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun03g168400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat5g095240.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Tiffany.R1.2g091720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun01g246400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_22030.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_025149Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_00093.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_019880gene-KK1_019880_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019880rna-KK1_019880_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_019880_Cc_Asha_v1.0rna-KK1_019880_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1504911..1504953rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1504911..1504953Cajanus cajanexon
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1504911..1504953rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1504911..1504953Cajanus cajanexon
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1505139..1505179rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1505139..1505179Cajanus cajanexon
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1505139..1505179rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1505139..1505179Cajanus cajanexon
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1505844..1506074rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1505844..1506074Cajanus cajanexon
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1505844..1506074rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1505844..1506074Cajanus cajanexon
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1506167..1506269rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1506167..1506269Cajanus cajanexon
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1506167..1506269rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1506167..1506269Cajanus cajanexon
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1506359..1506594rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1506359..1506594Cajanus cajanexon
rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1506359..1506594rna-KK1_019880_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1506359..1506594Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1504911..1504953rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1504911..1504953Cajanus cajanCDS
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1504911..1504953rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1504911..1504953Cajanus cajanCDS
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1505139..1505179rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1505139..1505179Cajanus cajanCDS
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1505139..1505179rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1505139..1505179Cajanus cajanCDS
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1505844..1506074rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1505844..1506074Cajanus cajanCDS
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1505844..1506074rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1505844..1506074Cajanus cajanCDS
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1506167..1506269rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1506167..1506269Cajanus cajanCDS
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1506167..1506269rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1506167..1506269Cajanus cajanCDS
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1506359..1506594rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1506359..1506594Cajanus cajanCDS
rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1506359..1506594rna-KK1_019880_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1506359..1506594Cajanus cajanCDS


Homology
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 3.325e-108
Identity = 146/160 (91.25%), Postives = 154/160 (96.25%), Query Frame = 1
Query:    7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 486
            VKYS+EPDN TKSCKARG+DLRVHFKNTRETA AIRKLPL+KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE
Sbjct:    2 VKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161          
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.449e-108
Identity = 146/161 (90.68%), Postives = 154/161 (95.65%), Query Frame = 1
Query:    7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEV 489
            VKYS+EP NPTKS KA G DLRVHFKNTRETAFA+RKLPL KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 
Sbjct:    2 VKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEA 162          
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.669e-107
Identity = 147/160 (91.88%), Postives = 153/160 (95.62%), Query Frame = 1
Query:    7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE 486
            VKYS+EPDN TKSCKARGADLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE
Sbjct:    2 VKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKE 161          
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.701e-104
Identity = 143/161 (88.82%), Postives = 149/161 (92.55%), Query Frame = 1
Query:    7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEV 489
            VKYS +P NPTKS KA G DLRVHFKNTRETAFA+RK+PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE 
Sbjct:    2 VKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEA 162          
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 4.052e-103
Identity = 141/161 (87.58%), Postives = 149/161 (92.55%), Query Frame = 1
Query:    7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEV 489
            VKYSR+P NPTKS KA G DLRVHFKNTRETAFA+R++PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE 
Sbjct:    2 VKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEA 162          
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryna carnea OX=6096 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.339e-79
Identity = 118/157 (75.16%), Postives = 136/157 (86.62%), Query Frame = 1
Query:   10 KYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKN-RHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPV 477
            KYS +P+NP KSCKARG+ LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPFRRFCGGVGR AQAK  +H+  QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+I+SEKE+ V
Sbjct:    3 KYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAKAFKHT--QGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVSEKEQVV 157          
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens OX=9606 GN=RPL17 PE=1 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 8.485e-77
Identity = 111/159 (69.81%), Postives = 134/159 (84.28%), Query Frame = 1
Query:    7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 483
            V+YS +P+NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PFRR+ GGVGR AQAK +    QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K
Sbjct:    2 VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159          
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus OX=9685 GN=RPL17 PE=2 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 8.485e-77
Identity = 111/159 (69.81%), Postives = 134/159 (84.28%), Query Frame = 1
Query:    7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 483
            V+YS +P+NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PFRR+ GGVGR AQAK +    QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K
Sbjct:    2 VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159          
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus OX=10116 GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 1.617e-76
Identity = 111/159 (69.81%), Postives = 134/159 (84.28%), Query Frame = 1
Query:    7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 483
            V+YS +P+NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PFRR+ GGVGR AQAK +    QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K
Sbjct:    2 VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159          
BLAST of rna-KK1_019880 vs. DB:Swiss
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus OX=9913 GN=RPL17 PE=2 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 1.617e-76
Identity = 111/159 (69.81%), Postives = 134/159 (84.28%), Query Frame = 1
Query:    7 VKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 483
            V+YS +P+NPTKSCK+RG++LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PFRR+ GGVGR AQAK +    QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+IL+EKE+ V K
Sbjct:    2 VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK-QWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159          
The following BLAST results are available for this feature:
BLAST of rna-KK1_019880 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RL172_ARATH3.325e-10891.2560S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL17_MAIZE3.449e-10890.6860S ribosomal protein L17 OS=Zea mays OX=4577 GN=R... [more]
RL171_ARATH1.669e-10791.8860S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL171_HORVU1.701e-10488.8260S ribosomal protein L17-1 OS=Hordeum vulgare OX=... [more]
RL172_HORVU4.052e-10387.5860S ribosomal protein L17-2 OS=Hordeum vulgare OX=... [more]
RL17_PODCA1.339e-7975.1660S ribosomal protein L17 OS=Podocoryna carnea OX=... [more]
RL17_HUMAN8.485e-7769.8160S ribosomal protein L17 OS=Homo sapiens OX=9606 ... [more]
RL17_FELCA8.485e-7769.8160S ribosomal protein L17 OS=Felis catus OX=9685 G... [more]
RL17_RAT1.617e-7669.8160S ribosomal protein L17 OS=Rattus norvegicus OX=... [more]
RL17_BOVIN1.617e-7669.8160S ribosomal protein L17 OS=Bos taurus OX=9913 GN... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001063Ribosomal protein L22/L17PFAMPF00237Ribosomal_L22coord: 18..153
e-value: 9.1E-42
score: 141.5
IPR001063Ribosomal protein L22/L17CDDcd00336Ribosomal_L22coord: 16..152
e-value: 3.33492E-38
score: 126.066
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealTIGRFAMTIGR01038TIGR01038coord: 5..155
e-value: 3.0E-60
score: 200.4
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealHAMAPMF_01331_ARibosomal_L22_Acoord: 1..155
score: 24.702
IPR036394Ribosomal protein L22/L17 superfamilyGENE3D3.90.470.10coord: 2..167
e-value: 2.1E-76
score: 257.7
IPR036394Ribosomal protein L22/L17 superfamilySUPERFAMILY54843Ribosomal protein L22coord: 3..155
IPR018260Ribosomal protein L22/L17, conserved sitePROSITEPS00464RIBOSOMAL_L22coord: 128..152

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_019880_Cc_Asha_v1.0 ID=rna-KK1_019880_Cc_Asha_v1.0; Name=rna-KK1_019880; organism=Cajanus cajan; type=mRNA; length=654bp
TCTCAGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTCCTGCAA
GGCTAGAGGCGCCGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTG
CTTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTCGAG
GATGTTTTGGCCCACAAACAGGCCATTCCTTTCCGACGCTTCTGTGGTGG
TGTGGGAAGGACAGCCCAGGCCAAGAACAGACACTCTAATGGACAAGGAC
GCTGGCCTGTCAAATCAGCTAAATTCATCCTAGATTTGCTGAAAAATGCC
GAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTTTACATTTC
TCATATCCAGGTTAACCAAGCACAGAAGCAAAGACGCCGTACCTACAGAG
CTCATGGGAGAATCAACCCTTACATGTCATCTCCCTGCCACATTGAGCTG
ATATTATCTGAGAAGGAAGAGCCTGTCAAGAAAGAGGTAATGATTGATCC
TCTCATTAAACATTATTTTCATATTCTCTTTTCTTTTGAATCAAAATTCT
TATTTATTGTTGTTCTTGTAGCCCGAGACGCAGTTGGCAACAAGCAAGAA
GAGGGCGGCTGCTGCTTGAAGTGGTGCTTCATCTTAACTTGCTCTGGAAG
CTAG
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protein sequence of rna-KK1_019880_Cc_Asha_v1.0

>rna-KK1_019880_Cc_Asha_v1.0 ID=rna-KK1_019880_Cc_Asha_v1.0; Name=rna-KK1_019880_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=217bp
SQVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLE
DVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNA
ESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL
ILSEKEEPVKKEVMIDPLIKHYFHILFSFESKFLFIVVLVARDAVGNKQE
EGGCCLKWCFILTCSGS
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mRNA from alignment at Chr_1-CM003603.1:1504911..1506594+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_019880_Cc_Asha_v1.0 ID=rna-KK1_019880_Cc_Asha_v1.0; Name=rna-KK1_019880; organism=Cajanus cajan; type=mRNA; length=1684bp; location=Sequence derived from: Chr_1-CM003603.1:1504911..1506594+ (Cajanus cajan
tctCAGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTGTAGGTT CCGTTGTGCTCTCATAATTTGAAACAATCTTAATATATTCGATTTCTATG TTTTATGCTGTTgttatttatgtatgtatgcTTCGTcgtttttatttact caaacgGGAGTGTTTCTTTTTGAAGTGTTGAGTTTAGGTTAATTTAAACT GATTCACGATTTTTCGATGTTGTTGCAGCCTGCAAGGCTAGAGGCGCCGA CCTCAGAGTGCATTTCAAGGTACTTAGATTTGTTTCTCTTTTATGGTTCC TTGCTGTGGTATTGGAGATTGTTACATGAGTTATCCTAAACTCTAATTTT TCGAATTGAATGTGATTTTCATGTGCATTTGTATGATCTCTTGTGGTGGT ATTGTAGGCTATTGCATGAGTTATCCCAAACCCTAATTTTTAGAATTGAA TGTGGATTTCGTATGCATTTGTGTTATGATTGGGAAACCTGAAGAAAAAA GCAGGGGTTTGTTTATCATGTGGACTGACCTCTCGTAACCTTCAGGGATA TAATATCCATTGTTATTGGGTGAACCTCTGTTCTTTTTATTCTGACTGAA GGTTCAGTAAATGATGGAACATGCTTGTATTAAACATTAAACAATTAGTT AGTAATCATGGTTAACTTGTGCTATATCACGCTCTTATTGTCAATCAGAG TTGTTTTGATTTAGTGAATGTAATTAGTAATAAAACTGTTATGCCTAATT GTTTAAAGAAAAACTAGCTTCTGTGAGTATCTCCCTTGTAAATCTTCTGG TGTATAGCATATGATTGTTTGgttaatgtattttttgttttgttgattaA GATTTTGTAGATATGGTTATTGGTTGGTAATgttgtttgaattaatttat tcacGTGTTTGAtctgtttcatttattttacagaACACTAGGGAGACTGC TTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTCGAGG ATGTTTTGGCCCACAAACAGGCCATTCCTTTCCGACGCTTCTGTGGTGGT GTGGGAAGGACAGCCCAGGCCAAGAACAGACACTCTAATGGACAAGGACG CTGGCCTGTCAAATCAGCTAAATTCATCCTAGATTTGCTGAAAAATGCCG AGAGTAATGCTGAAGTATGTCAtgtatatgtatttgatttgatttttccA TGTTATAGTTTTTGCTCAACATCTAAAGTCTTGtgctttttatttctttg gcaCAGGTGAAAGGTTTGGATGTGGATGCTCTTTACATTTCTCATATCCA GGTTAACCAAGCACAGAAGCAAAGACGCCGTACCTACAGAGCTCATGGGA GAATCAACCGTATGTAGCTGATaattttgatgatgttgttttAACGGATA ATGTATTTCTATTGCATGATTATGTTGacgatgatttttttttggcagCT TACATGTCATCTCCCTGCCACATTGAGCTGATATTATCTGAGAAGGAAGA GCCTGTCAAGAAAGAGGTAATGATTGATCCTCtcattaaacattattttc atattctcttttcttttgaatcaaaattcttatttattgttgttCTTGTA GCCCGAGACGCAGTTGGCAACAAGCAAGAAGAGGGCGGCTGCTGCTTGAA GTGGTGCTTCATCTTAACTTGCTCTGGAAGCTAG
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Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1504911..1506594+

>rna-KK1_019880_Cc_Asha_v1.0 ID=rna-KK1_019880_Cc_Asha_v1.0; Name=rna-KK1_019880; organism=Cajanus cajan; type=CDS; length=1308bp; location=Sequence derived from: Chr_1-CM003603.1:1504911..1506594+ (Cajanus cajan
tctCAGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTtctCAGG
TGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTCCTGCAAGGCTAGA
GGCGCCGACCTCAGAGTGCATTTCAAGCCTGCAAGGCTAGAGGCGCCGAC
CTCAGAGTGCATTTCAAGaACACTAGGGAGACTGCTTTTGCCATCAGGAA
GTTGCCCCTGGTTAAAGCTAAAAGATACCTCGAGGATGTTTTGGCCCACA
AACAGGCCATTCCTTTCCGACGCTTCTGTGGTGGTGTGGGAAGGACAGCC
CAGGCCAAGAACAGACACTCTAATGGACAAGGACGCTGGCCTGTCAAATC
AGCTAAATTCATCCTAGATTTGCTGAAAAATGCCGAGAGTAATGCTGAAa
ACACTAGGGAGACTGCTTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
AAAAGATACCTCGAGGATGTTTTGGCCCACAAACAGGCCATTCCTTTCCG
ACGCTTCTGTGGTGGTGTGGGAAGGACAGCCCAGGCCAAGAACAGACACT
CTAATGGACAAGGACGCTGGCCTGTCAAATCAGCTAAATTCATCCTAGAT
TTGCTGAAAAATGCCGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGA
TGCTCTTTACATTTCTCATATCCAGGTTAACCAAGCACAGAAGCAAAGAC
GCCGTACCTACAGAGCTCATGGGAGAATCAACCGTGAAAGGTTTGGATGT
GGATGCTCTTTACATTTCTCATATCCAGGTTAACCAAGCACAGAAGCAAA
GACGCCGTACCTACAGAGCTCATGGGAGAATCAACCCTTACATGTCATCT
CCCTGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTCAAGAA
AGAGGTAATGATTGATCCTCtcattaaacattattttcatattctctttt
cttttgaatcaaaattcttatttattgttgttCTTGTAGCCCGAGACGCA
GTTGGCAACAAGCAAGAAGAGGGCGGCTGCTGCTTGAAGTGGTGCTTCAT
CTTAACTTGCTCTGGAAGCTAGCTTACATGTCATCTCCCTGCCACATTGA
GCTGATATTATCTGAGAAGGAAGAGCCTGTCAAGAAAGAGGTAATGATTG
ATCCTCtcattaaacattattttcatattctcttttcttttgaatcaaaa
ttcttatttattgttgttCTTGTAGCCCGAGACGCAGTTGGCAACAAGCA
AGAAGAGGGCGGCTGCTGCTTGAAGTGGTGCTTCATCTTAACTTGCTCTG
GAAGCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001063Ribosomal_uL22
IPR005721Ribosomal_uL22_euk/arc
IPR036394Ribosomal_uL22_sf
IPR018260Ribosomal_L22/L17_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit