rna-KK1_019903
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: IOJAM_ARATH (Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g67620 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 6.563e-44 Identity = 74/147 (50.34%), Postives = 100/147 (68.03%), Query Frame = 1
Query: 82 GFSSLSAVNGRNCFLDLHEIENVLTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLWTPGTKRNESDEVNTRPAYV 522
G S++S + L L E+E +L DVKAD+V V+P HC WADF V+ATGRS WH++NIAQAL+Y+ AKQKQ+GA+ ++LPSVQG KWIVID GK +VHALDEKAR Y+NLE LW+ + ++ + + + +V
Sbjct: 37 GISNVSEI------LTLPEVEKILADVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYR---------AKQKQKGAKHVMLPSVQGY-NSKWIVIDYGKFVVHALDEKARGYFNLESLWSAESSGTDTSDQDLQNVFV 167
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: IOJAP_SHIFL (Ribosomal silencing factor RsfS OS=Shigella flexneri OX=623 GN=rsfS PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.005e-11 Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = 1
Query: 151 LTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLWT 468
+ D+K D+ L V D M++ TG S+ HV +IA ++ Q+ R A + L V+G+ WIV+D G VIVH + E++R Y LE LW+
Sbjct: 14 IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV-------------QESRAAGLLPL-GVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: IOJAP_ECOLI (Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12) OX=83333 GN=rsfS PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.005e-11 Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = 1
Query: 151 LTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLWT 468
+ D+K D+ L V D M++ TG S+ HV +IA ++ Q+ R A + L V+G+ WIV+D G VIVH + E++R Y LE LW+
Sbjct: 14 IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV-------------QESRAAGLLPL-GVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: IOJAP_ECOL6 (Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rsfS PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.005e-11 Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = 1
Query: 151 LTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLWT 468
+ D+K D+ L V D M++ TG S+ HV +IA ++ Q+ R A + L V+G+ WIV+D G VIVH + E++R Y LE LW+
Sbjct: 14 IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV-------------QESRAAGLLPL-GVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: IOJAP_ZYMMO (Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rsfS PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 2.137e-11 Identity = 33/123 (26.83%), Postives = 64/123 (52.03%), Query Frame = 1
Query: 130 LHEIENVLTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLWTPGTKRNESDE 498
L + + L D +A ++ +P+ AD+MV+A+GRS+ V +AQ L + + +++ ++G W+++D+G +I+H + R++YNLE +W G +ESD+
Sbjct: 20 LKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAATGYVS--------------KIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWGFG---DESDQ 125
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: IOJAP_PSEAB (Ribosomal silencing factor RsfS OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=rsfS PE=1 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 3.123e-11 Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 145 NVLTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLW 465
+ L D+KA D+ L V D+MV+A G S+ VK++A ++ KA K+ G + + +G E G+W ++D G V+VH + R +Y+LE LW
Sbjct: 12 DALEDLKAQDIVTLDVRDKTSVTDYMVIACGSSSRQVKSLADNVLTKA-----------KENGVKPL---GSEGLESGEWALLDLGDVVVHVMLPATRQFYDLERLW 104
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: IOJAP_TREPA (Ribosomal silencing factor RsfS OS=Treponema pallidum (strain Nichols) OX=243276 GN=rsfS PE=1 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 6.906e-11 Identity = 36/109 (33.03%), Postives = 53/109 (48.62%), Query Frame = 1
Query: 139 IENVLTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLW 465
+ L D +A+DV V V C WADF V+AT L++ R L +Q R R V +G +W V+D G ++VH + +ARA+Y+L+ LW
Sbjct: 10 VAEALCDARAEDVCVFDVSARCGWADFAVVAT----------VPGLLHGTHR----LVCEQAARFGLREVHRKKRGLCEEQWRVLDFGSILVHLMSAQARAFYDLDRLW 104
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: IOJAP_BACHD (Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rsfS PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 2.954e-9 Identity = 36/107 (33.64%), Postives = 53/107 (49.53%), Query Frame = 1
Query: 145 NVLTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLW 465
N + D KA+ V L + ADF ++ G S V+ IA L A +++G E + ++G E +W++ID G V+VH + RAYYNLE LW
Sbjct: 12 NAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVA-----------QEQGIE---IKRLEGYEQARWVLIDLGDVVVHVFHKDERAYYNLEKLW 104
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: IOJAP_CHRVO (Ribosomal silencing factor RsfS OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) OX=243365 GN=rsfS PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 4.043e-9 Identity = 34/118 (28.81%), Postives = 58/118 (49.15%), Query Frame = 1
Query: 124 LDLHEIENV----LTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLW 465
+++ EI + L D+K D+ L K M++ATG S VK +A ++ K K+ G + + +G E G+W+++D+G V+VH + R YY++E LW
Sbjct: 1 MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSV-----------QVKLKEAGVD---IVGSEGHESGEWVLVDAGDVVVHVMLPAVRDYYDIEALW 104
BLAST of rna-KK1_019903 vs. DB:Swiss
Match: MASU1_HUMAN (Mitochondrial assembly of ribosomal large subunit protein 1 OS=Homo sapiens OX=9606 GN=MALSU1 PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 3.288e-8 Identity = 29/115 (25.22%), Postives = 55/115 (47.83%), Query Frame = 1
Query: 124 LDLHEIENVLTDVKADDVKVLPVPKHCDWADFMVLATGRSTWHVKNIAQALIYKAPRSFFFLTAKQKQRGAERMVLPSVQGQEGGKWIVIDSGKVIVHALDEKARAYYNLEGLWT 468
D+ + ++L A D+ V+ VP + D+ V+ +G ST H+ +A F++ K +R ++G++ W+ +D G +++H + + R Y LE LWT
Sbjct: 92 FDIDMMVSLLRQENARDICVIQVPPEMRYTDYFVIVSGTSTRHLHAMA-----------FYVVKMYKHLKCKRDPHVKIEGKDTDDWLCVDFGSMVIHLMLPETREIYELEKLWT 195 The following BLAST results are available for this feature:
BLAST of rna-KK1_019903 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019903_Cc_Asha_v1.0 ID=rna-KK1_019903_Cc_Asha_v1.0; Name=rna-KK1_019903; organism=Cajanus cajan; type=mRNA; length=561bpback to top protein sequence of rna-KK1_019903_Cc_Asha_v1.0 >rna-KK1_019903_Cc_Asha_v1.0 ID=rna-KK1_019903_Cc_Asha_v1.0; Name=rna-KK1_019903_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=186bpback to top mRNA from alignment at Chr_1-CM003603.1:1640960..1642920+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019903_Cc_Asha_v1.0 ID=rna-KK1_019903_Cc_Asha_v1.0; Name=rna-KK1_019903; organism=Cajanus cajan; type=mRNA; length=1961bp; location=Sequence derived from: Chr_1-CM003603.1:1640960..1642920+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1640960..1642920+ >rna-KK1_019903_Cc_Asha_v1.0 ID=rna-KK1_019903_Cc_Asha_v1.0; Name=rna-KK1_019903; organism=Cajanus cajan; type=CDS; length=1122bp; location=Sequence derived from: Chr_1-CM003603.1:1640960..1642920+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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