rna-KK1_019927
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019927 vs. DB:Swiss
Match: RGS1_ARATH (Regulator of G-protein signaling 1 OS=Arabidopsis thaliana OX=3702 GN=RGS1 PE=1 SV=1) HSP 1 Score: 508.064 bits (1307), Expect = 7.933e-178 Identity = 264/392 (67.35%), Postives = 321/392 (81.89%), Query Frame = 1 Query: 10 CAVEGGCPSDYVAIALSIFSFIVLLLWSIFPFLVHKVPRTKGSGFWIPVIQVVASFNLLLSIVMSNNYLKFGKRNWLQSCYLWGVWGEAPLGFGLLLSCRITQASQLYFIFVKRRLPLIKSYIFLPLILLPWTAIAAVIHLMRPLSSRCHMRAQWTIPVVCFHSLYVAILVVVTAAVHHIEFRFDELKDLWRGILVSAVSIAVWVTAYILNEIYDNISWLEVASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESREFRTMSQALGIPDSGVLTQSEPISRVDPNEPLDKLLLNKRFRQSFMAFADSCLAGESVHFFDEVYELSKIPEDDCVRRIYMARHIIEKYIVAGAAMEVNISHRSRQEILLTSNLARPDLFHSALNEIIQLMR 1185
CA+ GGCPSDYVA+A+S+ F VLL S+ P L+HK PRT S FWIPVIQV++SFNLL SI+MS N L+F ++W + CYLW VW E PLGFGLL+SCRITQA QLYFIFVK+RLP +KSYIFLPL+LLPW AA+IH +PL+ +CHM QWT PV H+LYV L+ T AV H+EFRFDEL+DLW+GILVSA SI +WVTA++LNEI++ ISWL+VASRF+LLV ILVV FFSISS+QPLLSQISL++R++ EF+ M QALGIPDSG+L + E VDPNEPLDKLLLNKRFR SFM FADSC AGE++HFF+EVYE KIPEDD +RRIYMARHI+EK+IVAGA ME+N+SH++RQEIL T +L DLF +ALNE++QL++
Sbjct: 5 CALHGGCPSDYVAVAISVICFFVLLSRSVLPCLIHKAPRTNSSSFWIPVIQVISSFNLLFSIMMSVNLLRFRTKHWWRYCYLWAVWIEGPLGFGLLMSCRITQAFQLYFIFVKKRLPPVKSYIFLPLVLLPWIFGAAIIHATKPLNDKCHMGLQWTFPVAGLHALYVLALIAFTRAVRHVEFRFDELRDLWKGILVSATSIVIWVTAFVLNEIHEEISWLQVASRFVLLVTGGILVVVFFSISSNQPLLSQISLKKRQNFEFQRMGQALGIPDSGLLFRKEEFRPVDPNEPLDKLLLNKRFRHSFMEFADSCYAGETLHFFEEVYEHGKIPEDDSIRRIYMARHIMEKFIVAGAEMELNLSHKTRQEILTTQDLTHTDLFKNALNEVMQLIK 396 The following BLAST results are available for this feature:
BLAST of rna-KK1_019927 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019927_Cc_Asha_v1.0 ID=rna-KK1_019927_Cc_Asha_v1.0; Name=rna-KK1_019927; organism=Cajanus cajan; type=mRNA; length=1335bpback to top protein sequence of rna-KK1_019927_Cc_Asha_v1.0 >rna-KK1_019927_Cc_Asha_v1.0 ID=rna-KK1_019927_Cc_Asha_v1.0; Name=rna-KK1_019927_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=444bpback to top mRNA from alignment at Chr_1-CM003603.1:1809738..1815196+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019927_Cc_Asha_v1.0 ID=rna-KK1_019927_Cc_Asha_v1.0; Name=rna-KK1_019927; organism=Cajanus cajan; type=mRNA; length=5459bp; location=Sequence derived from: Chr_1-CM003603.1:1809738..1815196+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1809738..1815196+ >rna-KK1_019927_Cc_Asha_v1.0 ID=rna-KK1_019927_Cc_Asha_v1.0; Name=rna-KK1_019927; organism=Cajanus cajan; type=CDS; length=2670bp; location=Sequence derived from: Chr_1-CM003603.1:1809738..1815196+ (Cajanus cajanback to top |