rna-KK1_019933
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: ALB4_ARATH (ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ALB4 PE=1 SV=3) HSP 1 Score: 492.656 bits (1267), Expect = 2.800e-169 Identity = 268/376 (71.28%), Postives = 307/376 (81.65%), Query Frame = 1 Query: 142 VVRFGFKPGFLPEPDDAEGLLRELFGRAEGLLYTIXXXXXXXXXXXXX---XXXXXKQSNDWLSGITNYMETVLKVLKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQSSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWLQKLGGAKNPVRQVPDDIIKDELTQAQKSIFPDDIMKDELTQVQKSISKLNSTQVEEAKQSEKKS-EGPQPGERF 1257
V + GF+P D+ +++ AE LLYTIADAAVSSS+ T QSNDW SGI NYMET+LKVLKDGLST+HVPY+YGFAIILLTVLVKAATFPLTKKQVESA+AM++L PQ+KAIQ+RYAGDQE+IQLETARLYKLA INPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTT+A+RQNGSGISWLFPF++GHPPLGW DTLAYLVLP+LLV SQY+S+QIMQSSQ+NDP MKSSQA+TK LPLMIGYFALSVPSGLSLYWLTNNILST QQVWLQK GGAKNPV + + + K++ TQ + F + + VQKS+S+L ++ K EK + E P+PGERF
Sbjct: 45 VAQLGFRP-------DSFDFIKD---HAENLLYTIADAAVSSSETFESVAGTTTKTTQSNDWFSGIANYMETILKVLKDGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPAMKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPVEKFTNLVTKEDKTQQIEKSFSEPL-------VQKSVSEL---KIPREKGGEKVTPECPKPGERF 400
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: ALB3_ARATH (Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ALB3 PE=1 SV=2) HSP 1 Score: 410.994 bits (1055), Expect = 6.151e-138 Identity = 220/311 (70.74%), Postives = 263/311 (84.57%), Query Frame = 1 Query: 211 LFGRAEGLLYTIXXXXXXXXXXXXXXXXXXKQ-SNDWLSGITNYMETVLKVLKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQSSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWLQKLGGAKNPVRQVPDDIIKDELTQAQKSIF-PDD 1137
+F RAE LLYTIADAAV +D+V T ++A Q S W I++ ME VLK+LKDGLS +HVPYAYGFAIILLT++VKAAT+PLTK+QVES LAM+ LQP++KAIQQRYAG+QERIQLET+RLYK A +NPLAGCLPTLATIPVWIGLY+ALSNVA+EGL TEGFFWIPSL GPT+IA+RQ+GSGISWLFPFVDGHPPLGW DT+AYLVLPVLL+ SQY+S++IM+ Q +DP K++ + KFLPLMIGYFALSVPSGLS+YWLTNN+LST QQV+L+KLGGAK + + II +A++SI PDD
Sbjct: 76 IFTRAESLLYTIADAAVVGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLSTAQQVYLRKLGGAKPNMDENASKIISA--GRAKRSIAQPDD 384
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: PPF1_PEA (Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum OX=3888 GN=PPF-1 PE=2 SV=2) HSP 1 Score: 402.905 bits (1034), Expect = 4.489e-135 Identity = 215/307 (70.03%), Postives = 256/307 (83.39%), Query Frame = 1 Query: 202 LRELFGRAEGLLYTIXXXXXXXXXXXXXXXXXXKQSNDWLSGITNYMETVLKVLKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQSSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWLQKLGGAKNPVRQVPDDIIKDELTQAQKS 1122
L +F RAEGLLYT+ADA V++ A + AA K + W I++ ME VLKVLKDGLS++HVPY+YGFAIILLTV+VKAAT PLTK+QVES LAM+ LQP++KAIQ+RYAG+QERIQLET+RLY A +NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGF WIPSL GPT+IA+RQ+GSGISWLFPFVDGHP LGW DT AYLVLPVLL+VSQY+S++IM+ Q NDPN K++ + KFLPLMIGYF+LSVPSGL++YW TNN+LST QQVWL+KLGGAK V + II QA++S
Sbjct: 53 LSGIFARAEGLLYTLADATVAADAAASTDVAAQK-NGGWFGFISDGMEFVLKVLKDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQTNDPNQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKLGGAKPAVNENAGGIITA--GQAKRS 356
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: ALB32_CHLRE (Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=ALB3.2 PE=2 SV=1) HSP 1 Score: 303.523 bits (776), Expect = 1.365e-96 Identity = 151/238 (63.45%), Postives = 188/238 (78.99%), Query Frame = 1 Query: 328 ITNYMETVLKVLKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQSSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWLQ 1041
+ + E VL+ L +GL + +PY+YGFAII LTVLVK ATFPLT+KQVES L+++ LQP+VK +Q +YA D E +QLETARLYK A +NPLAGC PTLATIPV+IGLY ALSN A EGLLTEGFFWIPSL GPTTI G G+ WL PF +G PP+GW++ AYLV+PVLLV SQY S +I+ S DP+ + +QA+ KFLPLMIG+F+L+VPSGL+LYW NN+LSTGQQ++L+
Sbjct: 77 LAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVESTLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNALSNAAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMPVLLVASQYASQKIISSQNNQDPSQQQAQAILKFLPLMIGWFSLNVPSGLTLYWFVNNLLSTGQQLYLK 309
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: ALB31_CHLRE (Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=ALB3.1 PE=3 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 7.995e-84 Identity = 136/255 (53.33%), Postives = 197/255 (77.25%), Query Frame = 1 Query: 301 KQSNDWLSGITNYMETVLKVLKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLL-TEGFFWIPSLAGPTTIASRQNGSGISWLFPF-VDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQSS-QANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWLQKLGGA 1056
+++ W++ + + +E VL L++GL LHVPY+YG++IILLT++VK T+PLTK+QVESA+A++ L+P++ I+ R+ D+++IQ ET+ LY+ A +NPLAGCLPTLATIP++IGL+ +L+NVA++GLL T+GF+++PSLAGPTT+A RQ+G G SWL+P DG PP+GW D AYL LP+LLV QY S + D N + +AL FLPLM+G+F+L+VP+GLSLY+L N +LS+ Q++L+KLGGA
Sbjct: 108 QRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTYPLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATIPIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIGWEDAAAYLTLPLLLVAVQYASSSVTSPPIDPKDENANTQRALLVFLPLMVGWFSLNVPAGLSLYYLANTVLSSAIQIYLKKLGGA 362
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: YIDC_SYNFM (Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=yidC PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.650e-28 Identity = 74/216 (34.26%), Postives = 113/216 (52.31%), Query Frame = 1 Query: 400 YGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGF-FWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQSSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWLQK 1044
+G AIILLT+++K +PLT+K +S M+ +QP++ I+++Y GD+E++ E LY+ +NP+ GCLP L IPV+ LYR L+ + L E F WI L P + I + P++ G P L TL + + +Q + A DP + +P+M F ++ PSGL LYWL NN+LS QQ W+ +
Sbjct: 361 WGVAIILLTIVIKILFWPLTQKSYQSMQKMKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYRMLNGAVE--LRHEPFMLWIDDLTAPDRLP-------IGFDIPYLGGLPVL----TLLMGIT---------MFIQQKMTPSAGDPR---QDQIMMIMPVMFTVFFVNFPSGLVLYWLVNNVLSIAQQYWVNR 551
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: YIDC_LEPBL (Membrane protein insertase YidC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) OX=355276 GN=yidC PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 2.213e-28 Identity = 83/242 (34.30%), Postives = 124/242 (51.24%), Query Frame = 1 Query: 325 GITN-YMETVLKVLKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQ---SSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWL 1038
GIT + ++ VLK + +P YG++II+ +L K +PL +KQ ES M+ L PQ+K I +++A D + Q +T LYK N+NP+ GCLP + IP++I LY A S+ D L F W+ L+ P I W P + G L L++ + QI Q +S + DPN K L +P+M+ Y ++PSG++LYW N+LS GQQ W+
Sbjct: 394 GITTPFRNGIIWVLKQ-IYRFTIP-NYGWSIIIFAILFKLVFYPLNQKQAESMKKMQELSPQLKTINEKFANDPKMRQQKTMELYKKNNVNPVGGCLPMVIQIPIFIALYTAFSDTID--LWNSPFLWVKDLSEPDVI----------WTSPAIPYFTQTGIGLNLLALLM---------VGTQIFQTRMTSVSMDPNQK---MLMYVMPVMMLYIFWNMPSGVTLYWTFQNVLSIGQQ-WV 608
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: YIDC_LEPBJ (Membrane protein insertase YidC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) OX=355277 GN=yidC PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 2.213e-28 Identity = 83/242 (34.30%), Postives = 124/242 (51.24%), Query Frame = 1 Query: 325 GITN-YMETVLKVLKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQ---SSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWL 1038
GIT + ++ VLK + +P YG++II+ +L K +PL +KQ ES M+ L PQ+K I +++A D + Q +T LYK N+NP+ GCLP + IP++I LY A S+ D L F W+ L+ P I W P + G L L++ + QI Q +S + DPN K L +P+M+ Y ++PSG++LYW N+LS GQQ W+
Sbjct: 394 GITTPFRNGIIWVLKQ-IYRFTIP-NYGWSIIIFAILFKLVFYPLNQKQAESMKKMQELSPQLKTINEKFANDPKMRQQKTMELYKKNNVNPVGGCLPMVIQIPIFIALYTAFSDTID--LWNSPFLWVKDLSEPDVI----------WTSPAIPYFTQTGIGLNLLALLM---------VGTQIFQTRMTSVSMDPNQK---MLMYVMPVMMLYIFWNMPSGVTLYWTFQNVLSIGQQ-WV 608
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: YIDC_LEPIC (Membrane protein insertase YidC OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=yidC PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 8.003e-28 Identity = 73/220 (33.18%), Postives = 110/220 (50.00%), Query Frame = 1 Query: 400 YGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIASR-------QNGSGISWLFPFVDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQSSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWL 1038
YG++II+ +L K +PL +KQ +S M+ L PQ+K I +++A D + Q +T LYK N+NP+ GCLP + IP++I LY A S+ D L F W+ L+ P I + Q G G++ L + G Q +S + DPN K L +P+M+ Y ++PSG++LYW N+LS GQQ W+
Sbjct: 422 YGWSIIIFAILFKLVFYPLNQKQADSMKKMQELSPQLKTINEKFANDPKMRQQKTMELYKKNNVNPVGGCLPMVIQIPIFIALYTAFSDTID--LWNSPFLWVKDLSEPDVIWTSPAIPYFTQTGIGLNLLALLMVGTQVF-----------------------QTRMTSVSMDPNQK---MLMYVMPVMMLYIFWNMPSGVTLYWTFQNVLSIGQQ-WI 612
BLAST of rna-KK1_019933 vs. DB:Swiss
Match: YIDC_LEPIN (Membrane protein insertase YidC OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=yidC PE=3 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 8.769e-28 Identity = 73/220 (33.18%), Postives = 110/220 (50.00%), Query Frame = 1 Query: 400 YGFAIILLTVLVKAATFPLTKKQVESALAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIASR-------QNGSGISWLFPFVDGHPPLGWSDTLAYXXXXXXXXXSQYISVQIMQSSQANDPNMKSSQALTKFLPLMIGYFALSVPSGLSLYWLTNNILSTGQQVWL 1038
YG++II+ +L K +PL +KQ +S M+ L PQ+K I +++A D + Q +T LYK N+NP+ GCLP + IP++I LY A S+ D L F W+ L+ P I + Q G G++ L + G Q +S + DPN K L +P+M+ Y ++PSG++LYW N+LS GQQ W+
Sbjct: 422 YGWSIIIFAILFKLVFYPLNQKQADSMKKMQELSPQLKTINEKFANDPKMRQQKTMELYKKNNVNPVGGCLPMVIQIPIFIALYTAFSDTID--LWNSPFLWVKDLSEPDVIWTSPAIPYFTQTGIGLNLLALLMVGTQVF-----------------------QTRMTSVSMDPNQK---MLMYVMPVMMLYIFWNMPSGVTLYWTFQNVLSIGQQ-WI 612 The following BLAST results are available for this feature:
BLAST of rna-KK1_019933 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019933_Cc_Asha_v1.0 ID=rna-KK1_019933_Cc_Asha_v1.0; Name=rna-KK1_019933; organism=Cajanus cajan; type=mRNA; length=1671bpback to top protein sequence of rna-KK1_019933_Cc_Asha_v1.0 >rna-KK1_019933_Cc_Asha_v1.0 ID=rna-KK1_019933_Cc_Asha_v1.0; Name=rna-KK1_019933_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=556bpback to top mRNA from alignment at Chr_1-CM003603.1:1845984..1852404+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019933_Cc_Asha_v1.0 ID=rna-KK1_019933_Cc_Asha_v1.0; Name=rna-KK1_019933; organism=Cajanus cajan; type=mRNA; length=6421bp; location=Sequence derived from: Chr_1-CM003603.1:1845984..1852404+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1845984..1852404+ >rna-KK1_019933_Cc_Asha_v1.0 ID=rna-KK1_019933_Cc_Asha_v1.0; Name=rna-KK1_019933; organism=Cajanus cajan; type=CDS; length=3342bp; location=Sequence derived from: Chr_1-CM003603.1:1845984..1852404+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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