rna-KK1_003208
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana OX=3702 GN=SYP121 PE=1 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 6.225e-100 Identity = 158/249 (63.45%), Postives = 195/249 (78.31%), Query Frame = 1 Query: 76 GGRELNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822 GG L+KF E+VESVKEE+KEL+R +L + ++Q KTLH+ K V++LRS+MD DV + L KAK +K +LEAL RAN A SLP CGPGS S RTRT+++ L K L SM+SFN LRE IS EYR+TVQRRY+ VTGENPD++T+D LISTGESE FLQKAIQ+QGR ++DTI EIQERH +K+IE+NL ELHQ+FLDMAVL++ QG QLDDIESHV A+SF+ G QLQ R +QKNTR +TC Sbjct: 40 GGVNLDKFFEDVESVKEELKELDRLNETLSSCHEQSKTLHNAKAVKDLRSKMDGDVGVALKKAKMIKVKLEALDRANAANRSLPGCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENPDERTLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTC 288
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana OX=3702 GN=SYP125 PE=2 SV=1) HSP 1 Score: 272.707 bits (696), Expect = 6.705e-90 Identity = 141/274 (51.46%), Postives = 203/274 (74.09%), Query Frame = 1 Query: 1 MNDLLSGLFYKGKQEEKEQVIEITHGGRELNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822 MNDL S F K + + + +E L+KF E+VE+VK+++K +E L+ +N++ KT+H+ K V+ELR++MD DVA+ L + K +K +LEAL +AN + ++P CGPGS + RTR+++V L K L+ M+SF LR +++ EY++TV+RRY+ +TGE D+QTID LI++GESE+FLQKAIQ+QGR I+DTI EIQERH +KEIE+NL ELHQ+FLDMA L++ QG+QL++IESHVA A+SFV +G QLQ R +QK++R +TC Sbjct: 1 MNDLFSNSFKKNQAQLGD--VEAGQETMNLDKFFEDVENVKDDMKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANANSRNVPGCGPGSSTDRTRSSVVSGLGKKLKDLMDSFQGLRARMNNEYKETVERRYFTITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTC 272
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana OX=3702 GN=SYP124 PE=2 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 1.104e-89 Identity = 143/277 (51.62%), Postives = 204/277 (73.65%), Query Frame = 1 Query: 1 MNDLLSGLFYKGKQEEKEQVIEITHGGRE---LNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822 MNDL S F K +++ ++ G+E L+KF E+VE+VK+ +K +E SL+ +N++ KT+H+ K V+ELR++MD DVA L + K +K +LEAL +AN + ++ CGPGS + RTRT++V L K L+ M+SF LR +++ EY++TV+RRY+ +TGE D+QTI+ LIS+GESE+FLQKAIQ+QGR I+DTI EIQERH +KEIE+NL ELHQ+FLDMA L++ QG+QL+DIESHV+ A+SFV +G QLQ R +QK++R +TC Sbjct: 1 MNDLFSSSFKKYTDLKQQAQMDDIESGKETMNLDKFFEDVENVKDNMKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSSTDRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTC 277
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana OX=3702 GN=SYP122 PE=1 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 1.048e-86 Identity = 148/287 (51.57%), Postives = 193/287 (67.25%), Query Frame = 1 Query: 1 MNDLLSGLF----YKGKQEEKEQVIEIT---------HGGRELNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822 MNDLLSG F G IE++ HGG L+ F +VE V E++KEL+R +LR++N+Q KTLH+ V+EL+ +MD DV L A+ +K LEAL RAN SLP+ GPGS S R RT++V L K L+ ME F+ +RE I+ EY++TV R + VTGE PD+ T++ LISTGESE+FLQKAIQ+QGR I+DTI EIQERH +K+IE++L+ELHQ+FLDMAVL++ QG QLDDIE +V ANS V G +L R +QKNTR +TC Sbjct: 1 MNDLLSGSFKTSVADGSSPPHSHNIEMSKAKVSGGSCHGGNNLDTFFLDVEVVNEDLKELDRLCHNLRSSNEQSKTLHNANAVKELKKKMDADVTAALKTARRLKGNLEALDRANEVNRSLPESGPGSSSDRQRTSVVNGLRKKLKDEMEKFSRVRETITNEYKETVGRMCFTVTGEYPDEATLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNVKRANSLVRSGADRLVKARFYQKNTRKWTC 287
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana OX=3702 GN=SYP123 PE=2 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 1.934e-77 Identity = 112/221 (50.68%), Postives = 159/221 (71.95%), Query Frame = 1 Query: 160 LRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822 L+ N++ KT+H K V++LR+RMD V L + K +K +L AL ++N A + CGPGS + RTRT++V L K L+ M+ F LR +++ EY++TV+RRY+ VTG+ D++T++ LIS+GESE FLQKAIQ+QGR +MDT+ EIQERH T+KEIER+L ELHQ+FLDMA L++ QG L+DIES+V+ A+SFV +G QL + Q+N R + C Sbjct: 60 LQDANEESKTVHDSKAVKKLRARMDSSVTEVLKRVKMIKTKLVALEKSNAAQRKVAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNVSKASSFVMRGTDQLHGAKVLQRNNRKWAC 280
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana OX=3702 GN=SYP132 PE=1 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.845e-57 Identity = 115/278 (41.37%), Postives = 166/278 (59.71%), Query Frame = 1 Query: 1 MNDLLSGLFYKGK-QEEKEQVIEITH---GGRELNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822 MNDLL G F + Q +E +E+ G + L F ++V+ + ++ +L++ L+A++++ K++ ++ ++ M+ DV + A+ +K +LE L R N A P C GS R+RTA +L K L+ M F LRE I EYRD V RR Y VTGE D+ TID LI TG SE QKAIQ+QGR +MDT+ EIQERH ++++E+ L +L Q+FLDMAVL+ QGE LD+IES V+ A V G LQ ++ QKN+R + C Sbjct: 1 MNDLLKGSFELPRGQSSREGDVELGEQQGGDQGLEDFFKKVQVIDKQYDKLDKLLKKLQASHEESKSVTKAPAMKAIKKTMEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATTLSLKKKLKDKMAEFQVLRENIQQEYRDVVDRRVYTVTGERADEDTIDELIETGNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKWMC 278
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana OX=3702 GN=KN PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.442e-54 Identity = 85/217 (39.17%), Postives = 145/217 (66.82%), Query Frame = 1 Query: 175 QQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLIS-TGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822 ++ K +H + V+ LR+++ ++ L KAK +K++LE + +AN+ L G+ +R+RTA+ L K L+ M F LR+++ EY++TV+RRY+ VTGE+ + + I+ +I+ E FL +AIQ+ G+ +++T+ EIQ+R+ KEIE++L ELHQ+FLDMAV+++ QGEQ+D+IE HV A+ +V G +L+ ++HQ+N+R + C Sbjct: 74 EESKGVHKAESVKSLRNKISNEIVSGLRKAKSIKSKLEEMDKANKEIKRLS----GTPVYRSRTAVTNGLRKKLKEVMMEFQGLRQKMMSEYKETVERRYFTVTGEHANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAKSHQRNSRKWMC 286
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana OX=3702 GN=SYP131 PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 1.260e-53 Identity = 103/279 (36.92%), Postives = 161/279 (57.71%), Query Frame = 1 Query: 1 MNDLLSGLFYKGKQEEKEQVIEITHGGRE-----LNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822 MNDLL G + IE HG L+ F ++V+ ++++ ++L++ L+ +++ K + ++ ++ RM+ DV ++ +K ++E L R N + P CG G+ RTRTA A+ K + + F LR+ I EYR+ V+RR + VTG+ D++ ID LI TG+SE QKAI++QGR IMDT+ EIQERH ++++E+ L +L Q+FLDMAVL+ QGE LD+IE+ V+ A V G QL QK++R + C Sbjct: 1 MNDLLKGSLEFSRDRSNRSDIESGHGPGNSGDLGLSGFFKKVQEIEKQYEKLDKHLNKLQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMC 279
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana OX=3702 GN=SYP112 PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 5.631e-40 Identity = 82/224 (36.61%), Postives = 132/224 (58.93%), Query Frame = 1 Query: 154 LSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHR---ANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNF 816 L L+ N++ K+ HS K +R LR RM+ ++ KA VK +E L + ANR + GS RTRT++ + K LR +M F+ LRE+I +YR+ ++R+Y+ TGE P + ++ +IS S S L K + + + + +ERH + +I+R+L+ LHQ+FLDMAVL++ QG+++DDIE++VA A SFV+ G L +K T+++ Sbjct: 69 LDLQNLNEETKSTHSTKILRGLRDRMESNIVTISRKANTVKTLIETLEKRNVANRTSFK-----EGSCVDRTRTSITNGVRKKLRDTMSEFHRLRERIFADYREDLKRKYFLATGEEPSNEDMEKMISGSGSCSDLVKTFEVKPEMDL-----KTKERHEAVNDIKRSLNRLHQVFLDMAVLVETQGDRIDDIEANVANAGSFVSGGTNSLYYANQMKKKTKSW 282
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: STX1A_CAEEL (Syntaxin-1A homolog OS=Caenorhabditis elegans OX=6239 GN=unc-64 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.728e-12 Identity = 50/207 (24.15%), Postives = 97/207 (46.86%), Query Frame = 1 Query: 190 LHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTR 810 L +P ++ + +D +A+ A V+ +L+ + A + + G G+ R R L++ M +N + + +QR+ + G+ + ++ +I +G F Q I +A T+ +I+ RH + ++E ++ ELH +F+DMA+L++ QGE +D IE +V A FV + V + +Q R Sbjct: 64 LSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLIENA----IDHDEQGAGNADLRIRKTQHSTLSRRFVEVMTDYNKTQTDYRERCKGRIQRQL-DIAGKQVGDEDLEEMIESGNPGVFTQGIITDTQQAK--QTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKAR 263 The following BLAST results are available for this feature:
BLAST of rna-KK1_003208 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_003208_Cc_Asha_v1.0 ID=rna-KK1_003208_Cc_Asha_v1.0; Name=rna-KK1_003208; organism=Cajanus cajan; type=mRNA; length=894bpback to top protein sequence of rna-KK1_003208_Cc_Asha_v1.0 >rna-KK1_003208_Cc_Asha_v1.0 ID=rna-KK1_003208_Cc_Asha_v1.0; Name=rna-KK1_003208_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=297bpback to top mRNA from alignment at Chr_11-CM003613.1:34625034..34626277+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_003208_Cc_Asha_v1.0 ID=rna-KK1_003208_Cc_Asha_v1.0; Name=rna-KK1_003208; organism=Cajanus cajan; type=mRNA; length=1244bp; location=Sequence derived from: Chr_11-CM003613.1:34625034..34626277+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_11-CM003613.1:34625034..34626277+ >rna-KK1_003208_Cc_Asha_v1.0 ID=rna-KK1_003208_Cc_Asha_v1.0; Name=rna-KK1_003208; organism=Cajanus cajan; type=CDS; length=1788bp; location=Sequence derived from: Chr_11-CM003613.1:34625034..34626277+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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