rna-KK1_003208

Transcript Overview
Namerna-KK1_003208
Unique Namerna-KK1_003208_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length894
ProductSyntaxin-121 family
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003613.1supercontigChr_11-CM003613.1:34625034..34626277 +Cajanus cajan Asha genome v1.0n/a
Chr_11-CM003613.1supercontigChr_11-CM003613.1:34625034..34626277 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0370Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR328Pisum sativum Cameor genome v1aPisum sativum
caiccL0246Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR0473Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0582Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0594Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0474Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0570Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0578Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caccL0280Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0435Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0737Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1408Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1513Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0560Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0686Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0437Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0491Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0449Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0503Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0431Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0510Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0420Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0504Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0514Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0511Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0582Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0270Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0426Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0586Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0729Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL1070Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0286Cicer arietinum
carccL0453Cicer arietinum
ccccaR0522Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0576Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0592Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0518Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0597Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0624Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014659082.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_14453Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg31614.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr07.1715Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.5g123840.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_00295Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.5g154480.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr01.1728Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004497588.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vum_08G02619.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vum_04G02595.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg751.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan03g250000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Cr_05456.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Va02G003740.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan02g015200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Hedin2.R1.3g036400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_014639542.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_07913.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun01g180800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_00863Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun07g015200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Tiffany.R1.3g028480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.007G267200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_19645Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va03G076370.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.001G196400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004494199.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_03114.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cc_v2.0_07981.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_003208gene-KK1_003208_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003208rna-KK1_003208_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_003208_Cc_Asha_v1.0rna-KK1_003208_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003208_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34625034..34625565rna-KK1_003208_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34625034..34625565Cajanus cajanexon
rna-KK1_003208_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34625034..34625565rna-KK1_003208_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34625034..34625565Cajanus cajanexon
rna-KK1_003208_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34625916..34626277rna-KK1_003208_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34625916..34626277Cajanus cajanexon
rna-KK1_003208_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34625916..34626277rna-KK1_003208_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34625916..34626277Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003208_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34625034..34625565rna-KK1_003208_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34625034..34625565Cajanus cajanCDS
rna-KK1_003208_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34625034..34625565rna-KK1_003208_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34625034..34625565Cajanus cajanCDS
rna-KK1_003208_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34625916..34626277rna-KK1_003208_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34625916..34626277Cajanus cajanCDS
rna-KK1_003208_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34625916..34626277rna-KK1_003208_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34625916..34626277Cajanus cajanCDS


Homology
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana OX=3702 GN=SYP121 PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 6.225e-100
Identity = 158/249 (63.45%), Postives = 195/249 (78.31%), Query Frame = 1
Query:   76 GGRELNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822
            GG  L+KF E+VESVKEE+KEL+R   +L + ++Q KTLH+ K V++LRS+MD DV + L KAK +K +LEAL RAN A  SLP CGPGS S RTRT+++  L K L  SM+SFN LRE IS EYR+TVQRRY+ VTGENPD++T+D LISTGESE FLQKAIQ+QGR  ++DTI EIQERH  +K+IE+NL ELHQ+FLDMAVL++ QG QLDDIESHV  A+SF+  G  QLQ  R +QKNTR +TC
Sbjct:   40 GGVNLDKFFEDVESVKEELKELDRLNETLSSCHEQSKTLHNAKAVKDLRSKMDGDVGVALKKAKMIKVKLEALDRANAANRSLPGCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENPDERTLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTC 288          
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana OX=3702 GN=SYP125 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 6.705e-90
Identity = 141/274 (51.46%), Postives = 203/274 (74.09%), Query Frame = 1
Query:    1 MNDLLSGLFYKGKQEEKEQVIEITHGGRELNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822
            MNDL S  F K + +  +  +E       L+KF E+VE+VK+++K +E     L+ +N++ KT+H+ K V+ELR++MD DVA+ L + K +K +LEAL +AN  + ++P CGPGS + RTR+++V  L K L+  M+SF  LR +++ EY++TV+RRY+ +TGE  D+QTID LI++GESE+FLQKAIQ+QGR  I+DTI EIQERH  +KEIE+NL ELHQ+FLDMA L++ QG+QL++IESHVA A+SFV +G  QLQ  R +QK++R +TC
Sbjct:    1 MNDLFSNSFKKNQAQLGD--VEAGQETMNLDKFFEDVENVKDDMKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANANSRNVPGCGPGSSTDRTRSSVVSGLGKKLKDLMDSFQGLRARMNNEYKETVERRYFTITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTC 272          
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana OX=3702 GN=SYP124 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.104e-89
Identity = 143/277 (51.62%), Postives = 204/277 (73.65%), Query Frame = 1
Query:    1 MNDLLSGLFYKGKQEEKEQVIEITHGGRE---LNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822
            MNDL S  F K    +++  ++    G+E   L+KF E+VE+VK+ +K +E    SL+ +N++ KT+H+ K V+ELR++MD DVA  L + K +K +LEAL +AN  + ++  CGPGS + RTRT++V  L K L+  M+SF  LR +++ EY++TV+RRY+ +TGE  D+QTI+ LIS+GESE+FLQKAIQ+QGR  I+DTI EIQERH  +KEIE+NL ELHQ+FLDMA L++ QG+QL+DIESHV+ A+SFV +G  QLQ  R +QK++R +TC
Sbjct:    1 MNDLFSSSFKKYTDLKQQAQMDDIESGKETMNLDKFFEDVENVKDNMKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSSTDRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTC 277          
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana OX=3702 GN=SYP122 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.048e-86
Identity = 148/287 (51.57%), Postives = 193/287 (67.25%), Query Frame = 1
Query:    1 MNDLLSGLF----YKGKQEEKEQVIEIT---------HGGRELNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822
            MNDLLSG F      G        IE++         HGG  L+ F  +VE V E++KEL+R   +LR++N+Q KTLH+   V+EL+ +MD DV   L  A+ +K  LEAL RAN    SLP+ GPGS S R RT++V  L K L+  ME F+ +RE I+ EY++TV R  + VTGE PD+ T++ LISTGESE+FLQKAIQ+QGR  I+DTI EIQERH  +K+IE++L+ELHQ+FLDMAVL++ QG QLDDIE +V  ANS V  G  +L   R +QKNTR +TC
Sbjct:    1 MNDLLSGSFKTSVADGSSPPHSHNIEMSKAKVSGGSCHGGNNLDTFFLDVEVVNEDLKELDRLCHNLRSSNEQSKTLHNANAVKELKKKMDADVTAALKTARRLKGNLEALDRANEVNRSLPESGPGSSSDRQRTSVVNGLRKKLKDEMEKFSRVRETITNEYKETVGRMCFTVTGEYPDEATLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNVKRANSLVRSGADRLVKARFYQKNTRKWTC 287          
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana OX=3702 GN=SYP123 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.934e-77
Identity = 112/221 (50.68%), Postives = 159/221 (71.95%), Query Frame = 1
Query:  160 LRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822
            L+  N++ KT+H  K V++LR+RMD  V   L + K +K +L AL ++N A   +  CGPGS + RTRT++V  L K L+  M+ F  LR +++ EY++TV+RRY+ VTG+  D++T++ LIS+GESE FLQKAIQ+QGR  +MDT+ EIQERH T+KEIER+L ELHQ+FLDMA L++ QG  L+DIES+V+ A+SFV +G  QL   +  Q+N R + C
Sbjct:   60 LQDANEESKTVHDSKAVKKLRARMDSSVTEVLKRVKMIKTKLVALEKSNAAQRKVAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNVSKASSFVMRGTDQLHGAKVLQRNNRKWAC 280          
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana OX=3702 GN=SYP132 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.845e-57
Identity = 115/278 (41.37%), Postives = 166/278 (59.71%), Query Frame = 1
Query:    1 MNDLLSGLFYKGK-QEEKEQVIEITH---GGRELNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822
            MNDLL G F   + Q  +E  +E+     G + L  F ++V+ + ++  +L++    L+A++++ K++     ++ ++  M+ DV    + A+ +K +LE L R N A    P C  GS   R+RTA   +L K L+  M  F  LRE I  EYRD V RR Y VTGE  D+ TID LI TG SE   QKAIQ+QGR  +MDT+ EIQERH  ++++E+ L +L Q+FLDMAVL+  QGE LD+IES V+ A   V  G   LQ  ++ QKN+R + C
Sbjct:    1 MNDLLKGSFELPRGQSSREGDVELGEQQGGDQGLEDFFKKVQVIDKQYDKLDKLLKKLQASHEESKSVTKAPAMKAIKKTMEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATTLSLKKKLKDKMAEFQVLRENIQQEYRDVVDRRVYTVTGERADEDTIDELIETGNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKWMC 278          
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana OX=3702 GN=KN PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.442e-54
Identity = 85/217 (39.17%), Postives = 145/217 (66.82%), Query Frame = 1
Query:  175 QQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLIS-TGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822
            ++ K +H  + V+ LR+++  ++   L KAK +K++LE + +AN+    L     G+  +R+RTA+   L K L+  M  F  LR+++  EY++TV+RRY+ VTGE+ + + I+ +I+     E FL +AIQ+ G+  +++T+ EIQ+R+   KEIE++L ELHQ+FLDMAV+++ QGEQ+D+IE HV  A+ +V  G  +L+  ++HQ+N+R + C
Sbjct:   74 EESKGVHKAESVKSLRNKISNEIVSGLRKAKSIKSKLEEMDKANKEIKRLS----GTPVYRSRTAVTNGLRKKLKEVMMEFQGLRQKMMSEYKETVERRYFTVTGEHANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAKSHQRNSRKWMC 286          
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana OX=3702 GN=SYP131 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.260e-53
Identity = 103/279 (36.92%), Postives = 161/279 (57.71%), Query Frame = 1
Query:    1 MNDLLSGLFYKGKQEEKEQVIEITHGGRE-----LNKFXXXXXXXXXXXXXXXRFELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNFTC 822
            MNDLL G     +       IE  HG        L+ F ++V+ ++++ ++L++    L+  +++ K +     ++ ++ RM+ DV      ++ +K ++E L R N    + P CG G+   RTRTA   A+ K  +  +  F  LR+ I  EYR+ V+RR + VTG+  D++ ID LI TG+SE   QKAI++QGR  IMDT+ EIQERH  ++++E+ L +L Q+FLDMAVL+  QGE LD+IE+ V+ A   V  G  QL      QK++R + C
Sbjct:    1 MNDLLKGSLEFSRDRSNRSDIESGHGPGNSGDLGLSGFFKKVQEIEKQYEKLDKHLNKLQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKWMC 279          
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana OX=3702 GN=SYP112 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.631e-40
Identity = 82/224 (36.61%), Postives = 132/224 (58.93%), Query Frame = 1
Query:  154 LSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHR---ANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTRNF 816
            L L+  N++ K+ HS K +R LR RM+ ++     KA  VK  +E L +   ANR +        GS   RTRT++   + K LR +M  F+ LRE+I  +YR+ ++R+Y+  TGE P  + ++ +IS   S S L K  + +    +     + +ERH  + +I+R+L+ LHQ+FLDMAVL++ QG+++DDIE++VA A SFV+ G   L      +K T+++
Sbjct:   69 LDLQNLNEETKSTHSTKILRGLRDRMESNIVTISRKANTVKTLIETLEKRNVANRTSFK-----EGSCVDRTRTSITNGVRKKLRDTMSEFHRLRERIFADYREDLKRKYFLATGEEPSNEDMEKMISGSGSCSDLVKTFEVKPEMDL-----KTKERHEAVNDIKRSLNRLHQVFLDMAVLVETQGDRIDDIEANVANAGSFVSGGTNSLYYANQMKKKTKSW 282          
BLAST of rna-KK1_003208 vs. DB:Swiss
Match: STX1A_CAEEL (Syntaxin-1A homolog OS=Caenorhabditis elegans OX=6239 GN=unc-64 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.728e-12
Identity = 50/207 (24.15%), Postives = 97/207 (46.86%), Query Frame = 1
Query:  190 LHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHRANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANSFVTKGVQQLQVVRNHQKNTR 810
            L +P   ++ +  +D  +A+    A  V+ +L+ +  A    +   + G G+   R R      L++     M  +N  +       +  +QR+   + G+    + ++ +I +G    F Q  I    +A    T+ +I+ RH  + ++E ++ ELH +F+DMA+L++ QGE +D IE +V  A  FV + V   +    +Q   R
Sbjct:   64 LSNPVNDQKTKEELDELMAVIKRAANKVRGKLKLIENA----IDHDEQGAGNADLRIRKTQHSTLSRRFVEVMTDYNKTQTDYRERCKGRIQRQL-DIAGKQVGDEDLEEMIESGNPGVFTQGIITDTQQAK--QTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFVDRAVADTKKAVQYQSKAR 263          
The following BLAST results are available for this feature:
BLAST of rna-KK1_003208 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
SY121_ARATH6.225e-10063.45Syntaxin-121 OS=Arabidopsis thaliana OX=3702 GN=SY... [more]
SY125_ARATH6.705e-9051.46Syntaxin-125 OS=Arabidopsis thaliana OX=3702 GN=SY... [more]
SY124_ARATH1.104e-8951.62Syntaxin-124 OS=Arabidopsis thaliana OX=3702 GN=SY... [more]
SY122_ARATH1.048e-8651.57Syntaxin-122 OS=Arabidopsis thaliana OX=3702 GN=SY... [more]
SY123_ARATH1.934e-7750.68Syntaxin-123 OS=Arabidopsis thaliana OX=3702 GN=SY... [more]
SY132_ARATH1.845e-5741.37Syntaxin-132 OS=Arabidopsis thaliana OX=3702 GN=SY... [more]
SY111_ARATH3.442e-5439.17Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
SY131_ARATH1.260e-5336.92Putative syntaxin-131 OS=Arabidopsis thaliana OX=3... [more]
SY112_ARATH5.631e-4036.61Syntaxin-112 OS=Arabidopsis thaliana OX=3702 GN=SY... [more]
STX1A_CAEEL5.728e-1224.15Syntaxin-1A homolog OS=Caenorhabditis elegans OX=6... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 30..60
NoneNo IPR availableGENE3D1.20.58.70coord: 26..254
e-value: 1.9E-47
score: 163.6
NoneNo IPR availableCDDcd15848SNARE_syntaxin1-likecoord: 199..260
e-value: 1.96391E-20
score: 81.0429
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 195..262
e-value: 5.6E-14
score: 62.4
IPR000727Target SNARE coiled-coil homology domainPFAMPF05739SNAREcoord: 236..288
e-value: 1.5E-13
score: 50.5
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 200..262
score: 16.413
IPR006011Syntaxin, N-terminal domainSMARTSM00503SynN_4coord: 25..151
e-value: 1.8E-18
score: 77.3
IPR006011Syntaxin, N-terminal domainPFAMPF00804Syntaxincoord: 30..235
e-value: 5.9E-60
score: 202.4
IPR006012Syntaxin/epimorphin, conserved sitePROSITEPS00914SYNTAXINcoord: 206..245
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 30..255

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_003208_Cc_Asha_v1.0 ID=rna-KK1_003208_Cc_Asha_v1.0; Name=rna-KK1_003208; organism=Cajanus cajan; type=mRNA; length=894bp
ATGAACGACTTGTTATCGGGTTTGTTCTACAAGGGAAAGCAGGAAGAAAA
GGAGCAGGTGATAGAGATAACACATGGTGGGAGGGAGTTGAACAAGTTCT
TGGAAGAAGTGGAGTCAGTGAAGGAAGAGGTGAAGGAGCTAGAGAGGTTC
GAGCTGAGCCTGCGAGCAACCAACCAACAGGGGAAAACGCTTCACAGTCC
AAAGGGCGTGAGGGAGCTTCGGTCGCGCATGGACATGGACGTGGCTCTCA
CACTCACCAAGGCAAAACACGTCAAGGCTCGCTTGGAGGCTCTCCACCGC
GCCAACCGAGCCGCACTCTCTTTGCCCGACTGCGGACCCGGTTCCTACTC
CCACCGGACCCGAACCGCTCTTGTCGGAGCCCTCACCAAGAACCTCAGAC
ACTCCATGGAGAGTTTCAATAACCTGAGGGAGCAGATATCGTACGAGTAC
AGAGACACCGTGCAACGTAGATACTACGCTGTCACCGGAGAGAACCCTGA
TCAACAAACCATTGACCTCCTCATCTCCACGGGTGAGAGTGAAAGTTTCT
TGCAGAAAGCGATCCAGCAGCAAGGGAGAGCCAGCATCATGGACACCATC
CAAGAGATTCAGGAGAGGCACGGCACCATGAAAGAAATAGAGAGAAATCT
ACACGAGCTGCACCAACTGTTCTTGGATATGGCTGTGTTGATTCAACCCC
AGGGTGAACAATTGGATGACATTGAGAGCCATGTGGCACTTGCAAATTCC
TTCGTCACCAAAGGGGTGCAGCAGTTGCAAGTTGTGAGGAACCATCAGAA
GAATACTCGTAACTTTACCTGTTTTGCCATACTCCTCTTCATTATCATGT
TGGTTATAGTTCTCCCCATTGTTTTCAGAAATTGGTCAGATTAA
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protein sequence of rna-KK1_003208_Cc_Asha_v1.0

>rna-KK1_003208_Cc_Asha_v1.0 ID=rna-KK1_003208_Cc_Asha_v1.0; Name=rna-KK1_003208_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=297bp
MNDLLSGLFYKGKQEEKEQVIEITHGGRELNKFLEEVESVKEEVKELERF
ELSLRATNQQGKTLHSPKGVRELRSRMDMDVALTLTKAKHVKARLEALHR
ANRAALSLPDCGPGSYSHRTRTALVGALTKNLRHSMESFNNLREQISYEY
RDTVQRRYYAVTGENPDQQTIDLLISTGESESFLQKAIQQQGRASIMDTI
QEIQERHGTMKEIERNLHELHQLFLDMAVLIQPQGEQLDDIESHVALANS
FVTKGVQQLQVVRNHQKNTRNFTCFAILLFIIMLVIVLPIVFRNWSD
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mRNA from alignment at Chr_11-CM003613.1:34625034..34626277+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_003208_Cc_Asha_v1.0 ID=rna-KK1_003208_Cc_Asha_v1.0; Name=rna-KK1_003208; organism=Cajanus cajan; type=mRNA; length=1244bp; location=Sequence derived from: Chr_11-CM003613.1:34625034..34626277+ (Cajanus cajan
ATGAACGACTTGTTATCGGGTTTGTTCTACAAGGGAAAGCAGGAAGAAAA GGAGCAGGTGATAGAGATAACACATGGTGGGAGGGAGTTGAACAAGTTCT TGGAAGAAGTGGAGTCAGTGAAGGAAGAGGTGAAGGAGCTAGAGAGGTTC GAGCTGAGCCTGCGAGCAACCAACCAACAGGGGAAAACGCTTCACAGTCC AAAGGGCGTGAGGGAGCTTCGGTCGCGCATGGACATGGACGTGGCTCTCA CACTCACCAAGGCAAAACACGTCAAGGCTCGCTTGGAGGCTCTCCACCGC GCCAACCGAGCCGCACTCTCTTTGCCCGACTGCGGACCCGGTTCCTACTC CCACCGGACCCGAACCGCTCTTGTCGGAGCCCTCACCAAGAACCTCAGAC ACTCCATGGAGAGTTTCAATAACCTGAGGGAGCAGATATCGTACGAGTAC AGAGACACCGTGCAACGTAGATACTACGCTGTCACCGGAGAGAACCCTGA TCAACAAACCATTGACCTCCTCATCTCCACGGGTAACAAATTCATCACTC TTTCTGTCTGcttattaagatatatatatatcactagtATCAGTATAGTA TTAGTACTAGGATATAAACAAGCCTCACgtcaataaaatcaaataaaaat aacaacttataaaacacatatatacttcaatatttgagagattttttgaa taataaaatgatGAGAACTTAAGCCTAAAATAGACCATATCTCATCACCG TAGAATTGTGTgtaaaaataattctcataGAATATCTTCTCATAAAAACA CCATAACATAACCCCGATCATGTgcatgttttgtttttcttattttggtc TTTGCATTAATTGTTACATTATGGTGGAGCAGGTGAGAGTGAAAGTTTCT TGCAGAAAGCGATCCAGCAGCAAGGGAGAGCCAGCATCATGGACACCATC CAAGAGATTCAGGAGAGGCACGGCACCATGAAAGAAATAGAGAGAAATCT ACACGAGCTGCACCAACTGTTCTTGGATATGGCTGTGTTGATTCAACCCC AGGGTGAACAATTGGATGACATTGAGAGCCATGTGGCACTTGCAAATTCC TTCGTCACCAAAGGGGTGCAGCAGTTGCAAGTTGTGAGGAACCATCAGAA GAATACTCGTAACTTTACCTGTTTTGCCATACTCCTCTTCATTATCATGT TGGTTATAGTTCTCCCCATTGTTTTCAGAAATTGGTCAGATTAA
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Coding sequence (CDS) from alignment at Chr_11-CM003613.1:34625034..34626277+

>rna-KK1_003208_Cc_Asha_v1.0 ID=rna-KK1_003208_Cc_Asha_v1.0; Name=rna-KK1_003208; organism=Cajanus cajan; type=CDS; length=1788bp; location=Sequence derived from: Chr_11-CM003613.1:34625034..34626277+ (Cajanus cajan
ATGAACGACTTGTTATCGGGTTTGTTCTACAAGGGAAAGCAGGAAGAAAA
GGAGCAGGTGATAGAGATAACACATGGTGGGAGGGAGTTGAACAAGTTCT
TGGAAGAAGTGGAGTCAGTGAAGGAAGAGGTGAAGGAGCTAGAGAGGTTC
GAGCTGAGCCTGCGAGCAACCAACCAACAGGGGAAAACGCTTCACAGTCC
AAAGGGCGTGAGGGAGCTTCGGTCGCGCATGGACATGGACGTGGCTCTCA
CACTCACCAAGGCAAAACACGTCAAGGCTCGCTTGGAGGCTCTCCACCGC
GCCAACCGAGCCGCACTCTCTTTGCCCGACTGCGGACCCGGTTCCTACTC
CCACCGGACCCGAACCGCTCTTGTCGGAGCCCTCACCAAGAACCTCAGAC
ACTCCATGGAGAGTTTCAATAACCTGAGGGAGCAGATATCGTACGAGTAC
AGAGACACCGTGCAACGTAGATACTACGCTGTCACCGGAGAGAACCCTGA
TCAACAAACCATTGACCTCCTCATCTCCACGGATGAACGACTTGTTATCG
GGTTTGTTCTACAAGGGAAAGCAGGAAGAAAAGGAGCAGGTGATAGAGAT
AACACATGGTGGGAGGGAGTTGAACAAGTTCTTGGAAGAAGTGGAGTCAG
TGAAGGAAGAGGTGAAGGAGCTAGAGAGGTTCGAGCTGAGCCTGCGAGCA
ACCAACCAACAGGGGAAAACGCTTCACAGTCCAAAGGGCGTGAGGGAGCT
TCGGTCGCGCATGGACATGGACGTGGCTCTCACACTCACCAAGGCAAAAC
ACGTCAAGGCTCGCTTGGAGGCTCTCCACCGCGCCAACCGAGCCGCACTC
TCTTTGCCCGACTGCGGACCCGGTTCCTACTCCCACCGGACCCGAACCGC
TCTTGTCGGAGCCCTCACCAAGAACCTCAGACACTCCATGGAGAGTTTCA
ATAACCTGAGGGAGCAGATATCGTACGAGTACAGAGACACCGTGCAACGT
AGATACTACGCTGTCACCGGAGAGAACCCTGATCAACAAACCATTGACCT
CCTCATCTCCACGGGTGAGAGTGAAAGTTTCTTGCAGAAAGCGATCCAGC
AGCAAGGGAGAGCCAGCATCATGGACACCATCCAAGAGATTCAGGAGAGG
CACGGCACCATGAAAGAAATAGAGAGAAATCTACACGAGCTGCACCAACT
GTTCTTGGATATGGCTGTGTTGATTCAACCCCAGGGTGAACAATTGGATG
ACATTGAGAGCCATGTGGCACTTGCAAATTCCTTCGTCACCAAAGGGGTG
CAGCAGTTGCAAGTTGTGAGGAACCATCAGAAGAATACTCGTAACTTTAC
CTGTTTTGCCATACTCCTCTTCATTATCATGTTGGTTATAGTTCTCCCCA
TTGTTTTCAGAAATTGGTCAGATTAAGTGAGAGTGAAAGTTTCTTGCAGA
AAGCGATCCAGCAGCAAGGGAGAGCCAGCATCATGGACACCATCCAAGAG
ATTCAGGAGAGGCACGGCACCATGAAAGAAATAGAGAGAAATCTACACGA
GCTGCACCAACTGTTCTTGGATATGGCTGTGTTGATTCAACCCCAGGGTG
AACAATTGGATGACATTGAGAGCCATGTGGCACTTGCAAATTCCTTCGTC
ACCAAAGGGGTGCAGCAGTTGCAAGTTGTGAGGAACCATCAGAAGAATAC
TCGTAACTTTACCTGTTTTGCCATACTCCTCTTCATTATCATGTTGGTTA
TAGTTCTCCCCATTGTTTTCAGAAATTGGTCAGATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR006011Syntaxin_N
IPR006012Syntaxin/epimorphin_CS
IPR010989SNARE
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005484SNAP receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport