rna-KK1_003225

Transcript Overview
Namerna-KK1_003225
Unique Namerna-KK1_003225_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length549
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003613.1supercontigChr_11-CM003613.1:34749751..34752142 +Cajanus cajan Asha genome v1.0n/a
Chr_11-CM003613.1supercontigChr_11-CM003613.1:34749751..34752142 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0370Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR328Pisum sativum Cameor genome v1aPisum sativum
ccccL070Cajanus cajan Asha genome v1.0Cajanus cajan
caiccL0246Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccpvR0473Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0582Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0594Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0474Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0570Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0578Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caccL0280Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0435Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0737Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1408Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1513Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0560Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0691Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0437Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0491Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0449Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0503Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0431Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0510Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0511Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0575Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0582Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0270Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0426Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0586Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0733Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL1070Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0286Cicer arietinum
carccL0453Cicer arietinum
ccccaR0522Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0576Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0592Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0518Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0597Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0624Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_19811Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_00875Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun01g182000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat3g028120.1Pisum sativum Cameor genome v1aPisum sativum
Cr_05465.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg31600.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.5g155320.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_07923.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Va03G082200.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_004494211.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.001G197500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vum_04G02605.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Tiffany.R1.5g124600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan03g294000Vigna angularis Jingnong 6 genome v1.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_07992.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_003225gene-KK1_003225_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003225rna-KK1_003225_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_003225_Cc_Asha_v1.0rna-KK1_003225_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003225_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34749751..34749926rna-KK1_003225_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34749751..34749926Cajanus cajanexon
rna-KK1_003225_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34749751..34749926rna-KK1_003225_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34749751..34749926Cajanus cajanexon
rna-KK1_003225_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34751770..34752142rna-KK1_003225_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34751770..34752142Cajanus cajanexon
rna-KK1_003225_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34751770..34752142rna-KK1_003225_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34751770..34752142Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_003225_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34749751..34749926rna-KK1_003225_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34749751..34749926Cajanus cajanCDS
rna-KK1_003225_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34749751..34749926rna-KK1_003225_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34749751..34749926Cajanus cajanCDS
rna-KK1_003225_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34751770..34752142rna-KK1_003225_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:34751770..34752142Cajanus cajanCDS
rna-KK1_003225_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34751770..34752142rna-KK1_003225_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:34751770..34752142Cajanus cajanCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-KK1_003225 vs.
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_003225_Cc_Asha_v1.0 ID=rna-KK1_003225_Cc_Asha_v1.0; Name=rna-KK1_003225; organism=Cajanus cajan; type=mRNA; length=549bp
ATGGGTTGGGTTTGGAGGGACGACAACAGCAGCGAACATCGACGCGATGA
CTCTTCGGAACGATGCTCCACCACGAAGGTCGTGAAATCGCAGTGCAGAA
CAGAGGAGGTCGAATCTGGAAAGTTCGTCAGAAAATGCGAAAAAACCGAA
GAACTTCTCAGGAATTGCGTCGGAAAGCCTGTTGAAGTGTTGCAATCAAA
CAAAGAGTATACTGAAGAGGATATCACAGATGAGGTACTTAAAGGAATTC
CATTTAGGTCATCAGAAGGTGGTGTGTTTGACTTCCCTGGGCTGCGAAAT
GATATTGAAGTCATGGAACGTGGCATGTTGGATGGTCTCAGTCGTTTCTT
CGACGCAGCTGAAGAAATGAAGAAAGGCTTTTTTGATGTTTTTGTTAAGT
CTCCAAGCATCTTTGACGAAGAATCTTCTTCACCTTCTATGAGGCCAGGG
ATACCTAGTGAAGAATATCGACGGCCAGAAGCTCATCCTAAATCTAAGGA
GAAGGAATCTGGAGATGCTGATCTTTCTGCATTAGCTAAAGATGTTTAA
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protein sequence of rna-KK1_003225_Cc_Asha_v1.0

>rna-KK1_003225_Cc_Asha_v1.0 ID=rna-KK1_003225_Cc_Asha_v1.0; Name=rna-KK1_003225_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=182bp
MGWVWRDDNSSEHRRDDSSERCSTTKVVKSQCRTEEVESGKFVRKCEKTE
ELLRNCVGKPVEVLQSNKEYTEEDITDEVLKGIPFRSSEGGVFDFPGLRN
DIEVMERGMLDGLSRFFDAAEEMKKGFFDVFVKSPSIFDEESSSPSMRPG
IPSEEYRRPEAHPKSKEKESGDADLSALAKDV
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mRNA from alignment at Chr_11-CM003613.1:34749751..34752142+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_003225_Cc_Asha_v1.0 ID=rna-KK1_003225_Cc_Asha_v1.0; Name=rna-KK1_003225; organism=Cajanus cajan; type=mRNA; length=2392bp; location=Sequence derived from: Chr_11-CM003613.1:34749751..34752142+ (Cajanus cajan
ATGGGTTGGGTTTGGAGGGACGACAACAGCAGCGAACATCGACGCGATGA
CTCTTCGGAACGATGCTCCACCACGAAGGTCGTGAAATCGCAGTGCAGAA
CAGAGGAGGTCGAATCTGGAAAGTTCGTCAGAAAATGCGAAAAAACCGAA
GAACTTCTCAGGAATTGCGTCGGAAAgtaattcttatttttcacttatta
caaatcttttatttatttatttatttttacaatactCTAAGATGTGATGC
CGTAGAAAATActattgattgtttgattgattAGATACTAGGGAGAGGTT
TGCTATGAATTCTAGCCTACAGTATGTagaatttatttgttttctgaatc
acaaaataatttaatgaatgtTTTGAATTGAAAATCTGGAATATTTTGAA
TAGAATTGGTAACGGCTGCATTGATATCTTTGATCTTTTTAAGAATTAGG
GCAAAGACCGGAGGTATAGATTTTCTAGGGATAAGTATGTCCAAAAACTG
TTATATCTTTTGATAGCAATGTAAGtctggaaaaataaaatgaaaaaatt
atagagcTATGTATGGCTATGGCATATCCTTGTCTAAAGGAGTTAAGATA
AGTAGATAACTCACAAGGTGTGAGGTGTAGGCTTAAAATTTCCATATAGA
AAATCTATAAAACATACTACTGTTATGAAGCTTTCACATTGACATGTATG
ATGTATCTAATTCTAGGGCCTTGGTTGTAAATTCTTTCCCCAAGAGGTAT
GTTGATTTGTATCTAAGTCCTTATATGTGAATCCTGTTGATGCAAAACAG
AAGTGAAAATGTATAGCTAAGATTGTCATAAAATtcaaatagatataaat
aataatagtgaCCCTCCTTTGTCCTCCATCACCTACTCTATTTTTCTCCG
ActtcttttcatttatttgcATTCATGCAAAACCAGGTGAAAAGTAGCTT
GTTATTTGATAAGGGTATGGTAAATGGGTTGAAAGTAAGCATGACATACT
ATGTAATGGttgaattagtttttaaaaatctagTTTGTTTAGTCTTTTTA
AGATTTAGTGTTTGGATGACTAGTTTTTTTATCATTGTAGACAAACCAGA
TAATAgactttgtaatattttaaagtatggACGATTTCTTGATAGGTTGT
TGGAAGTCAAATTATTATCTATTGTAACTCGCACAAATAGAGGACTTATA
ACCATATTAGAAGTGGAAGGTGCAATTGATTTTTTCTTGGTTGCTTCCAT
TGAAAATCAAATTGCTACAGTGTTCTGTTTGGCAACATGGAGGGAAAGGG
AATGCTTCCAGTCACCcttaaacacacacacacacagagaatTCTTGCAG
TTGAGCTTGTCATCAGTGAGTAGGCCCATACTGCACGGTTTATATTTGAT
GGCCAAATATCTCGAGTCACAAGAACCTTAGTACTCTACTTAAGTCATGT
TCAGATAAACTTTTATGTACTTATAGGCGACgaaaatagataaaatgaat
gtagccgtttttattagttaaaatcaatttatacaattttataaaagttc
ttTTATCTAATTTCTCCAAAGCTGAGGAGTATAAGGTGATTTTTAACTTG
TGAAAGAAACTTGAATCATTTTACATTCTTATTTTCTACAAGtgtttata
aaatgtttatccAAATAAGACCATGTTTGGTTccatttaaatttatgata
ccAACCCATCTCTATTTGTATGTGGCCTGGGTGCACTTACATGTTTGTGC
ATCAGTGTGCATGTGCATTAGTTGATTTCATTTTCAGGCATTAGGTTCTG
CACAGCCTTTTAGAAGTGCACCATTGGAGTATTTTCATATGGACATAGCT
TCTTTTTGAAGGACTCTGCTTTATAGGTTGATTTTAAAGTTTGggaatta
aattatttgggAATATGGCTGGACCAGCCAGTTACCCTCTCTGAATCAGT
CGTTCTATTGTCACTATCATTAAAAtgtgattataatttttatctcatcT
TTACTTTCACATTTTTTAGGCCTGTTGAAGTGTTGCAATCAAACAAAGAG
TATACTGAAGAGGATATCACAGATGAGGTACTTAAAGGAATTCCATTTAG
GTCATCAGAAGGTGGTGTGTTTGACTTCCCTGGGCTGCGAAATGATATTG
AAGTCATGGAACGTGGCATGTTGGATGGTCTCAGTCGTTTCTTCGACGCA
GCTGAAGAAATGAAGAAAGgcttttttgatgtttttgttaAGTCTCCAAG
CATCTTTGACGAAGAATCTTCTTCACCTTCTATGAGGCCAGGGATACCTA
GTGAAGAATATCGACGGCCAGAAGCTCATCCTAAATCTAAGGAGAAGGAA
TCTGGAGATGCTGATCTTTCTGCATTAGCTAAAGATGTTTAA
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Coding sequence (CDS) from alignment at Chr_11-CM003613.1:34749751..34752142+

>rna-KK1_003225_Cc_Asha_v1.0 ID=rna-KK1_003225_Cc_Asha_v1.0; Name=rna-KK1_003225; organism=Cajanus cajan; type=CDS; length=1098bp; location=Sequence derived from: Chr_11-CM003613.1:34749751..34752142+ (Cajanus cajan
ATGGGTTGGGTTTGGAGGGACGACAACAGCAGCGAACATCGACGCGATGA
CTCTTCGGAACGATGCTCCACCACGAAGGTCGTGAAATCGCAGTGCAGAA
CAGAGGAGGTCGAATCTGGAAAGTTCGTCAGAAAATGCGAAAAAACCGAA
GAACTTCTCAGGAATTGCGTCGGAAAATGGGTTGGGTTTGGAGGGACGAC
AACAGCAGCGAACATCGACGCGATGACTCTTCGGAACGATGCTCCACCAC
GAAGGTCGTGAAATCGCAGTGCAGAACAGAGGAGGTCGAATCTGGAAAGT
TCGTCAGAAAATGCGAAAAAACCGAAGAACTTCTCAGGAATTGCGTCGGA
AAGCCTGTTGAAGTGTTGCAATCAAACAAAGAGTATACTGAAGAGGATAT
CACAGATGAGGTACTTAAAGGAATTCCATTTAGGTCATCAGAAGGTGGTG
TGTTTGACTTCCCTGGGCTGCGAAATGATATTGAAGTCATGGAACGTGGC
ATGTTGGATGGTCTCAGTCGTTTCTTCGACGCAGCTGAAGAAATGAAGAA
AGgcttttttgatgtttttgttaAGTCTCCAAGCATCTTTGACGAAGAAT
CTTCTTCACCTTCTATGAGGCCAGGGATACCTAGTGAAGAATATCGACGG
CCAGAAGCTCATCCTAAATCTAAGGAGAAGGAATCTGGAGATGCTGATCT
TTCTGCATTAGCTAAAGATGTTTAAGCCTGTTGAAGTGTTGCAATCAAAC
AAAGAGTATACTGAAGAGGATATCACAGATGAGGTACTTAAAGGAATTCC
ATTTAGGTCATCAGAAGGTGGTGTGTTTGACTTCCCTGGGCTGCGAAATG
ATATTGAAGTCATGGAACGTGGCATGTTGGATGGTCTCAGTCGTTTCTTC
GACGCAGCTGAAGAAATGAAGAAAGgcttttttgatgtttttgttaAGTC
TCCAAGCATCTTTGACGAAGAATCTTCTTCACCTTCTATGAGGCCAGGGA
TACCTAGTGAAGAATATCGACGGCCAGAAGCTCATCCTAAATCTAAGGAG
AAGGAATCTGGAGATGCTGATCTTTCTGCATTAGCTAAAGATGTTTAA
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