rna-KK1_034441

Transcript Overview
Namerna-KK1_034441
Unique Namerna-KK1_034441_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length399
ProductActin-depolymerizing factor 5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0245Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR201Pisum sativum Cameor genome v1aPisum sativum
ccpsR202Pisum sativum Cameor genome v1aPisum sativum
ccccR081Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0324Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0325Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0330Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0331Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccL0551Cicer arietinum ICC 4958 genome v2Cicer arietinum
caiccL0727Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0590Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0772Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0337Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0934Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1318Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1386Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0192Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asccL0805Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0258Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0259Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0265Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0266Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0276Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0277Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0290Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0291Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0297Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0298Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0590Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0780Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0089Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0875Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0634Cicer arietinum
carccL0836Cicer arietinum
ccccaR0344Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0345Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0319Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0320Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Vigun09g274400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_004505727.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014644787.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014636477.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr09.1057Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.011G034600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan08g183500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_17362Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va04G072660.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan04g255200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.009G120100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_23432Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Tiffany.R1.6g038680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va08G068970.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_17324.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat7g175600.1Pisum sativum Cameor genome v1aPisum sativum
Ca_11030Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
jg30637.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vum_02G00044.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cr_16655.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr11.1720Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun11g188400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vum_06G01668.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_021954Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_14910.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cc_v2.0_08975.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_034441gene-KK1_034441_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_034441rna-KK1_034441_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_034441_Cc_Asha_v1.0rna-KK1_034441_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_034441_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:97781..98028rna-KK1_034441_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:97781..98028Cajanus cajanCDS
rna-KK1_034441_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:97559..97709rna-KK1_034441_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:97559..97709Cajanus cajanCDS
rna-KK1_034441_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:97781..98028rna-KK1_034441_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:97781..98028Cajanus cajanCDS
rna-KK1_034441_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:97559..97709rna-KK1_034441_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:97559..97709Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_034441_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:97781..98028rna-KK1_034441_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:97781..98028Cajanus cajanexon
rna-KK1_034441_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:97559..97709rna-KK1_034441_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:97559..97709Cajanus cajanexon
rna-KK1_034441_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:97781..98028rna-KK1_034441_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:97781..98028Cajanus cajanexon
rna-KK1_034441_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:97559..97709rna-KK1_034441_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:97559..97709Cajanus cajanexon


Homology
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana OX=3702 GN=ADF5 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.411e-76
Identity = 110/132 (83.33%), Postives = 116/132 (87.88%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIRDIAK 396
            M VTDEC SSFMDMKWKK HRYIVFKI+E SR VTVDK+GG  E Y DL  SLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSP AS+IRAKILYATSKDGLRR L+GI YELQATDPTEMGFD+I+D AK
Sbjct:   12 MRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRAK 143          
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana OX=3702 GN=ADF9 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 5.813e-73
Identity = 100/132 (75.76%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIRDIAK 396
            MW+TD+CK SFM+MKWKK HRY+V+K++E SR VTVDK+G   E YDDL ASLP DDCRYAVFDFD+VTVDNCR SKIFFI WSP ASRIR K++YATSK GLRR LDG+ YELQATDPTEMGFD I+D AK
Sbjct:   10 MWMTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRAK 141          
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF5 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 5.211e-72
Identity = 99/132 (75.00%), Postives = 116/132 (87.88%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIRDIAK 396
            M V +EC+  FM+MKWKK HR++V+KIDE SR V VDK+GGP EGY++L A+LP+DDCRYAVFDFDFVTVDNC+KSKIFFIAWSPTASRIRAKILYATSK GLRR LDG+ YE+QATD +EMG+DVIR  A+
Sbjct:   12 MNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRAQ 143          
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana OX=3702 GN=ADF6 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.156e-60
Identity = 83/132 (62.88%), Postives = 104/132 (78.79%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIRDIAK 396
            M V DE K++F++++ KK HRY+VFKIDE  + V V+K G PTE YDD  ASLP +DCRYAV+DFDFVT +NC+KSKIFF AWSP+ S IRAK+LY+TSKD L R L GI YE+QATDPTE+  +V+R+ A 
Sbjct:   15 MGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana OX=3702 GN=ADF8 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 2.669e-58
Identity = 78/128 (60.94%), Postives = 103/128 (80.47%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIR 384
            M V DECK  F+++K K+ +R+IVFKIDE ++ V ++KLG P E YDD T+S+P D+CRYAV+DFDF T DNC+KSKIFFIAWSP  SR+R+K+LYA+SKD  +R ++GI  ELQATDP+EM  D+I+
Sbjct:    8 MHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIK 135          
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana OX=3702 GN=ADF10 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.048e-58
Identity = 78/128 (60.94%), Postives = 103/128 (80.47%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIR 384
            M V+DECK  F+++K K+ +R+IVFKIDE ++ V +DKLG P E Y+D T S+P D+CRYAV+D+DF T +NC+KSKIFFIAWSP  SR+R+K+LYA+SKD  +R LDGI  ELQATDP+EM  D+I+
Sbjct:    8 MHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIK 135          
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida OX=4102 GN=ADF1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.072e-57
Identity = 77/131 (58.78%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIRDIA 393
            M V D+CK  F+++K K+ HR+IV+KI+E  + V V+K+G PTE Y+D  ASLP ++CRYAV+DFDFVT +NC+KS+IFFIAW P  +R+R+K++YA+SKD  +R LDGI  ELQA DPTEMG DVI+  A
Sbjct:    8 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRA 138          
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.165e-57
Identity = 80/131 (61.07%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIRDIA 393
            M V DECK  F+++K K+  R+IVFKI+E  + V VD+LG P E YDD TA LP+D+CRYAVFDFDFVT +NC+KSKIFFI+W+P  SR+R+K+LYA+SKD  +R LDGI  ELQATDP+EM  D+++  A
Sbjct:    8 MAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum OX=4690 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 5.033e-57
Identity = 79/128 (61.72%), Postives = 101/128 (78.91%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIR 384
            M V DECK  FM++K K+  R+IVFKI+E  + VTV++LG P E YDD T  LP ++CRYAVFDFDFVT +NC+KSKIFFI+WSP  SR+R+K+LYA++KD  +R LDGI  ELQATDP+EM  D+I+
Sbjct:    8 MAVDDECKLKFMELKAKRNFRFIVFKIEEKVQQVTVERLGQPNESYDDFTECLPPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIK 135          
BLAST of rna-KK1_034441 vs. DB:Swiss
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana OX=3702 GN=ADF7 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.238e-56
Identity = 80/131 (61.07%), Postives = 105/131 (80.15%), Query Frame = 1
Query:    1 MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLTASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKDGLRRALDGISYELQATDPTEMGFDVIRDIA 393
            M V DECK  F+++K K+ +R+I+F+ID   + V V+KLG P E YDD TASLP+++CRYAVFDFDF+T +NC+KSKIFFIAWSP +SR+R K++YA+SKD  +R LDGI  ELQATDP+EM FD+I+  A
Sbjct:    8 MAVEDECKLKFLELKSKRNYRFIIFRID--GQQVVVEKLGNPDETYDDFTASLPANECRYAVFDFDFITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
The following BLAST results are available for this feature:
BLAST of rna-KK1_034441 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
ADF5_ARATH1.411e-7683.33Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF9_ARATH5.813e-7375.76Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF5_ORYSJ5.211e-7275.00Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF6_ARATH8.156e-6062.88Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF8_ARATH2.669e-5860.94Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF10_ARATH4.048e-5860.94Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF1_PETHY2.072e-5758.78Actin-depolymerizing factor 1 OS=Petunia hybrida O... [more]
ADF1_ORYSJ2.165e-5761.07Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF_LILLO5.033e-5761.72Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF7_ARATH1.238e-5661.07Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002108Actin-depolymerising factor homology domainSMARTSM00102adf_2coord: 5..132
e-value: 6.8E-46
score: 168.5
IPR002108Actin-depolymerising factor homology domainPFAMPF00241Cofilin_ADFcoord: 7..128
e-value: 5.4E-32
score: 110.1
IPR002108Actin-depolymerising factor homology domainPROSITEPS51263ADF_Hcoord: 1..132
score: 34.395
IPR029006ADF-H/Gelsolin-like domain superfamilyGENE3D3.40.20.10coord: 1..131
e-value: 4.0E-41
score: 141.7
IPR017904ADF/CofilinCDDcd11286ADF_cofilin_likecoord: 3..129
e-value: 1.15939E-57
score: 173.127
NoneNo IPR availableSUPERFAMILY55753Actin depolymerizing proteinscoord: 1..129

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_034441_Cc_Asha_v1.0 ID=rna-KK1_034441_Cc_Asha_v1.0; Name=rna-KK1_034441; organism=Cajanus cajan; type=mRNA; length=399bp
ATGTGGGTGACGGATGAGTGCAAGAGCTCCTTCATGGACATGAAGTGGAA
GAAGGAGCACCGATACATTGTCTTCAAGATCGACGAAGGATCAAGGCTCG
TCACCGTCGATAAACTCGGCGGCCCCACTGAGGGCTACGATGATCTCACG
GCCTCCTTGCCCTCCGATGACTGCCGTTACGCTGTCTTCGACTTCGACTT
CGTCACCGTTGATAACTGCCGCAAGAGCAAGATCTTCTTCATTGCATGGT
CTCCAACCGCATCAAGGATTAGAGCAAAGATTCTATACGCAACCTCAAAG
GATGGGCTGAGAAGAGCGCTTGATGGAATCAGCTATGAACTCCAGGCCAC
CGATCCCACCGAGATGGGCTTCGATGTAATTAGAGACATAGCCAAATAG
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protein sequence of rna-KK1_034441_Cc_Asha_v1.0

>rna-KK1_034441_Cc_Asha_v1.0 ID=rna-KK1_034441_Cc_Asha_v1.0; Name=rna-KK1_034441_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=132bp
MWVTDECKSSFMDMKWKKEHRYIVFKIDEGSRLVTVDKLGGPTEGYDDLT
ASLPSDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSK
DGLRRALDGISYELQATDPTEMGFDVIRDIAK
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mRNA from alignment at Scaffold000015-KQ483641.1:97559..98028-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_034441_Cc_Asha_v1.0 ID=rna-KK1_034441_Cc_Asha_v1.0; Name=rna-KK1_034441; organism=Cajanus cajan; type=mRNA; length=470bp; location=Sequence derived from: Scaffold000015-KQ483641.1:97559..98028- (Cajanus cajan
ATGTGGGTGACGGATGAGTGCAAGAGCTCCTTCATGGACATGAAGTGGAA GAAGGAGCACCGATACATTGTCTTCAAGATCGACGAAGGATCAAGGCTCG TCACCGTCGATAAACTCGGCGGCCCCACTGAGGGCTACGATGATCTCACG GCCTCCTTGCCCTCCGATGACTGCCGTTACGCTGTCTTCGACTTCGACTT CGTCACCGTTGATAACTGCCGCAAGAGCAAGATCTTCTTCATTGCATGGT AGTGCTACCCTTTTATATAGCATACAATACAAACTAATTATGACTTATGT CTTATAATTAATTCATCAGGTCTCCAACCGCATCAAGGATTAGAGCAAAG ATTCTATACGCAACCTCAAAGGATGGGCTGAGAAGAGCGCTTGATGGAAT CAGCTATGAACTCCAGGCCACCGATCCCACCGAGATGGGCTTCGATGTAA TTAGAGACATAGCCAAATAG
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Coding sequence (CDS) from alignment at Scaffold000015-KQ483641.1:97559..98028-

>rna-KK1_034441_Cc_Asha_v1.0 ID=rna-KK1_034441_Cc_Asha_v1.0; Name=rna-KK1_034441; organism=Cajanus cajan; type=CDS; length=798bp; location=Sequence derived from: Scaffold000015-KQ483641.1:97559..98028- (Cajanus cajan
ATGTGGGTGACGGATGAGTGCAAGAGCTCCTTCATGGACATGAAGTGGAA
GAAGGAGCACCGATACATTGTCTTCAAGATCGACGAAGGATCAAGGCTCG
TCACCGTCGATAAACTCGGCGGCCCCACTGAGGGCTACGATGATCTCACG
GCCTCCTTGCCCTCCGATGACTGCCGTTACGCTGTCTTCGACTTCGACTT
CGTCACCGTTGATAACTGCCGCAAGAGCAAGATCTTCTTCATTGCATGAT
GTGGGTGACGGATGAGTGCAAGAGCTCCTTCATGGACATGAAGTGGAAGA
AGGAGCACCGATACATTGTCTTCAAGATCGACGAAGGATCAAGGCTCGTC
ACCGTCGATAAACTCGGCGGCCCCACTGAGGGCTACGATGATCTCACGGC
CTCCTTGCCCTCCGATGACTGCCGTTACGCTGTCTTCGACTTCGACTTCG
TCACCGTTGATAACTGCCGCAAGAGCAAGATCTTCTTCATTGCATGGTCT
CCAACCGCATCAAGGATTAGAGCAAAGATTCTATACGCAACCTCAAAGGA
TGGGCTGAGAAGAGCGCTTGATGGAATCAGCTATGAACTCCAGGCCACCG
ATCCCACCGAGATGGGCTTCGATGTAATTAGAGACATAGCCAAATAGGTC
TCCAACCGCATCAAGGATTAGAGCAAAGATTCTATACGCAACCTCAAAGG
ATGGGCTGAGAAGAGCGCTTGATGGAATCAGCTATGAACTCCAGGCCACC
GATCCCACCGAGATGGGCTTCGATGTAATTAGAGACATAGCCAAATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002108ADF-H
IPR029006ADF-H/Gelsolin-like_dom_sf
IPR017904ADF/Cofilin
Vocabulary: Molecular Function
TermDefinition
GO:0003779actin binding
Vocabulary: Biological Process
TermDefinition
GO:0030042actin filament depolymerization
Vocabulary: Cellular Component
TermDefinition
GO:0015629actin cytoskeleton