rna-KK1_034461

Transcript Overview
Namerna-KK1_034461
Unique Namerna-KK1_034461_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length516
ProductPeptidyl-prolyl cis-trans isomerase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ccpsR201Pisum sativum Cameor genome v1aPisum sativum
ccvuR0331Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccL0551Cicer arietinum ICC 4958 genome v2Cicer arietinum
caccL0590Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL1318Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asccL0804Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0258Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0265Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0277Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0291Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0298Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0590Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
carccL0634Cicer arietinum
ccvumR0319Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Ca_14428.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat5g003080.1Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_16406Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.4g235360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.4g180360.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vum_02G00057.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_004500685.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun09g273100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
evm.model.Chr09.1070Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg13446.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_04724Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan04g246000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_014646365.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_034461gene-KK1_034461_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_034461rna-KK1_034461_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_034461_Cc_Asha_v1.0rna-KK1_034461_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_034461_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:258522..259037rna-KK1_034461_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:258522..259037Cajanus cajanCDS
rna-KK1_034461_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:258522..259037rna-KK1_034461_Cc_Asha_v1.0-CDS-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:258522..259037Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_034461_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:258522..259037rna-KK1_034461_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571847872:258522..259037Cajanus cajanexon
rna-KK1_034461_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:258522..259037rna-KK1_034461_Cc_Asha_v1.0-exon-Scaffold000015-KQ483641.1_Cc_Asha_v1.0-1571082112:258522..259037Cajanus cajanexon


Homology
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus OX=3873 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 6.122e-104
Identity = 151/170 (88.82%), Postives = 161/170 (94.71%), Query Frame = 1
Query:    4 NPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQLS 513
            NPKVFFDM I G PAGRIVMEL+ADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTG ESIYG+KFADENFI +HTGPGILSMANAG GTNGSQFFICT KTEWLDGKHVVFGKV+EG++VV+D+EKVGS SGKTS+PV +ADCGQLS
Sbjct:    3 NPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CYP1_SOYBN (Peptidyl-prolyl cis-trans isomerase 1 OS=Glycine max OX=3847 GN=Cyp1 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.473e-102
Identity = 152/170 (89.41%), Postives = 164/170 (96.47%), Query Frame = 1
Query:    4 NPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQLS 513
            NPKVFFDMTIGGQ AGRIVMEL+AD TPRTAENFRALCTGEKGVGRSGKPLHYKGS+FHRVIP+FMCQGGDFTAGNGTGGESIYG+KFADENF+ KHTGPGILSMANAGPGTNGSQFFICT KTEWLDGKHVVFG+V+EGL+VVKD+EKVGS SG+TSKPVV+A+CGQ S
Sbjct:    3 NPKVFFDMTIGGQSAGRIVMELYADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPSFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTEKTEWLDGKHVVFGQVIEGLNVVKDIEKVGSGSGRTSKPVVIANCGQPS 172          
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus OX=4058 GN=PCKR1 PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 7.146e-102
Identity = 152/170 (89.41%), Postives = 162/170 (95.29%), Query Frame = 1
Query:    4 NPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQLS 513
            NP+VFFDM++GGQPAGRIVMELFADTTPRTAENFRALCTGEKG GRSGKPLHYK S+FHRVIP FMCQGGDFTAGNGTGGESIYG+KFADENFI KHTGPGILSMANAGP TNGSQFFICTAKTEWLDGKHVVFG+VVEG+DVVK +EKVGSSSG+T+K VVV DCGQLS
Sbjct:    3 NPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum OX=4081 GN=CYP PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 1.071e-99
Identity = 148/169 (87.57%), Postives = 160/169 (94.67%), Query Frame = 1
Query:    4 NPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQL 510
            NPKVFFD+TIGG PAGR+VMELFADTTP+TAENFRALCTGEKGVG+ GKPLHYKGSTFHRVIP FMCQGGDFTAGNGTGGESIYG+KF DENF+ KHTGPGILSMANAGPGTNGSQFFICTAKTEWL+GKHVVFG+VVEG+DV+K  E VGSSSG+ SKPVV+ADCGQL
Sbjct:    3 NPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana OX=3702 GN=CYP19-1 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 3.752e-98
Identity = 144/170 (84.71%), Postives = 159/170 (93.53%), Query Frame = 1
Query:    4 NPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQLS 513
            NPKV+FDMT+GG+ AGRIVMEL+ADTTP TAENFRALCTGE+G+G+ GKPLHYKGS+FHRVIP FMCQGGDFTAGNGTGGESIYGSKF DENFI KHTGPGILSMANAG  TNGSQFFICT KT WLDGKHVVFG+VVEGL+VV+D+EKVGS SG+TSKPVV+ADCGQ+S
Sbjct:    4 NPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana OX=3702 GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 2.006e-96
Identity = 148/169 (87.57%), Postives = 156/169 (92.31%), Query Frame = 1
Query:    7 PKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQLS 513
            PKV+FDMTI GQPAGRIVMEL+ D TPRTAENFRALCTGEKGVG +GKPLH+KGS FHRVIPNFMCQGGDFTAGNGTGGESIYGSKF DENF  KHTGPGILSMANAG  TNGSQFFICT KT+WLDGKHVVFG+VVEGLDVVK +EKVGSSSGK +KPVVVADCGQLS
Sbjct:    4 PKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana OX=3702 GN=CYP19-2 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 4.147e-96
Identity = 143/170 (84.12%), Postives = 158/170 (92.94%), Query Frame = 1
Query:    4 NPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQLS 513
            +PKVFFDMTIGG PAG+IVMEL+ D TP+TAENFRALCTGEKGVGRSGKPLH+KGS+FHRVIPNFMCQGGDFT GNGTGGESIYG+KF DENF  KHTGPGILSMANAG  TNGSQFFICT KT+WLDGKHVVFG+VVEGLDVVK +EK+GSSSGK +KPVV+ADCG++S
Sbjct:    4 HPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus OX=3708 GN=CYP PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.349e-92
Identity = 138/170 (81.18%), Postives = 152/170 (89.41%), Query Frame = 1
Query:    1 MNPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQL 510
            +NPKV+FDMT+G + AGRIVMEL+ADT P TAENFRALCTGE+G+G+SGKPLHYKGS FHRVIP FMCQGGDFTAGNGTGGESIYG KF DENF+ KHTGPGILSM NAG  TNGSQFFICT KT WLDGKHVVFG+VVEG+DVV+D+EKVGS SG+TSK VV  DCGQL
Sbjct:    2 VNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana OX=3702 GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 6.687e-91
Identity = 138/170 (81.18%), Postives = 150/170 (88.24%), Query Frame = 1
Query:    4 NPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQLS 513
            NP+VFFDM++ G P GRI MELFADTTP TAENFRALCTGEKG+G+ GKPLH+KGS FHRVIP FMCQGGDFTA NGTGGESIYG+KF DENFI KHTG GILSMAN+GP TNGSQFFICT KT WLDGKHVVFG+VV+GLDVVK +EKVGS SGKTSK V + DCGQLS
Sbjct:    3 NPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of rna-KK1_034461 vs. DB:Swiss
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays OX=4577 GN=CYP PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 6.325e-90
Identity = 136/170 (80.00%), Postives = 149/170 (87.65%), Query Frame = 1
Query:    4 NPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQXXXXXXXXXXXXESIYGSKFADENFIMKHTGPGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEKVGSSSGKTSKPVVVADCGQLS 513
            NP+VFFDMT+GG PAGRIVMEL+A+  P+TAENFRALCTGEKGVG+SGKPLHYKGSTFHRVIP FMCQGGDFT GNGTGGESIYG KF DE F+ K   PG+LSMANAGP TNGSQFFICT  T WLDGKHVVFG+VVEG+DVVK +EKVG+ +G TSK V VADCGQLS
Sbjct:    3 NPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
The following BLAST results are available for this feature:
BLAST of rna-KK1_034461 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
CYPH_LUPLU6.122e-10488.82Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CYP1_SOYBN1.473e-10289.41Peptidyl-prolyl cis-trans isomerase 1 OS=Glycine m... [more]
CYPH_CATRO7.146e-10289.41Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_SOLLC1.071e-9987.57Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CP19A_ARATH3.752e-9884.71Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP18C_ARATH2.006e-9687.57Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CP19B_ARATH4.147e-9684.12Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CYPH_BRANA1.349e-9281.18Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP18D_ARATH6.687e-9181.18Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_MAIZE6.325e-9080.00Peptidyl-prolyl cis-trans isomerase OS=Zea mays OX... [more]
back to top
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPRINTSPR00153CSAPPISMRASEcoord: 117..129
score: 69.29
coord: 23..38
score: 63.03
coord: 130..145
score: 71.71
coord: 59..71
score: 81.69
coord: 102..117
score: 81.15
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPFAMPF00160Pro_isomerasecoord: 7..168
e-value: 2.2E-48
score: 164.5
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPROSITEPS50072CSA_PPIASE_2coord: 6..169
score: 46.307
IPR024936Cyclophilin-type peptidyl-prolyl cis-trans isomerasePIRSFPIRSF001467Peptidylpro_ismrsecoord: 1..171
e-value: 1.9E-81
score: 269.9
IPR029000Cyclophilin-like domain superfamilyGENE3D2.40.100.10coord: 1..171
e-value: 8.1E-91
score: 304.5
IPR029000Cyclophilin-like domain superfamilySUPERFAMILY50891Cyclophilin-likecoord: 2..170
IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved sitePROSITEPS00170CSA_PPIASE_1coord: 54..71
NoneNo IPR availableCDDcd01926cyclophilin_ABH_likecoord: 3..168
e-value: 1.53779E-120
score: 334.996

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_034461_Cc_Asha_v1.0 ID=rna-KK1_034461_Cc_Asha_v1.0; Name=rna-KK1_034461; organism=Cajanus cajan; type=mRNA; length=516bp
ATGAACCCTAAGGTCTTCTTCGACATGACCATCGGAGGCCAACCAGCGGG
GCGCATAGTGATGGAGTTGTTCGCCGACACAACTCCACGAACCGCTGAGA
ACTTTCGAGCGCTTTGCACCGGCGAGAAGGGCGTGGGGCGGAGCGGGAAG
CCCCTCCACTACAAGGGCTCCACATTCCACCGCGTGATCCCCAACTTCAT
GTGCCAAGGCGGGGACTTCACCGCGGGGAACGGCACCGGCGGCGAGTCCA
TCTACGGGTCGAAGTTCGCCGACGAGAACTTCATCATGAAGCACACAGGG
CCCGGCATTCTTTCGATGGCAAACGCAGGACCAGGAACCAATGGATCTCA
GTTCTTCATTTGCACCGCCAAGACGGAGTGGCTGGACGGCAAGCACGTGG
TGTTCGGCAAGGTGGTCGAGGGTCTTGACGTCGTCAAGGATGTCGAGAAG
GTGGGTTCCAGCTCCGGCAAGACCTCCAAGCCCGTCGTTGTTGCTGACTG
TGGACAACTCTCTTAG
back to top

protein sequence of rna-KK1_034461_Cc_Asha_v1.0

>rna-KK1_034461_Cc_Asha_v1.0 ID=rna-KK1_034461_Cc_Asha_v1.0; Name=rna-KK1_034461_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=171bp
MNPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGK
PLHYKGSTFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIMKHTG
PGILSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGKVVEGLDVVKDVEK
VGSSSGKTSKPVVVADCGQLS
back to top

mRNA from alignment at Scaffold000015-KQ483641.1:258522..259037-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_034461_Cc_Asha_v1.0 ID=rna-KK1_034461_Cc_Asha_v1.0; Name=rna-KK1_034461; organism=Cajanus cajan; type=mRNA; length=516bp; location=Sequence derived from: Scaffold000015-KQ483641.1:258522..259037- (Cajanus cajan
ATGAACCCTAAGGTCTTCTTCGACATGACCATCGGAGGCCAACCAGCGGG GCGCATAGTGATGGAGTTGTTCGCCGACACAACTCCACGAACCGCTGAGA ACTTTCGAGCGCTTTGCACCGGCGAGAAGGGCGTGGGGCGGAGCGGGAAG CCCCTCCACTACAAGGGCTCCACATTCCACCGCGTGATCCCCAACTTCAT GTGCCAAGGCGGGGACTTCACCGCGGGGAACGGCACCGGCGGCGAGTCCA TCTACGGGTCGAAGTTCGCCGACGAGAACTTCATCATGAAGCACACAGGG CCCGGCATTCTTTCGATGGCAAACGCAGGACCAGGAACCAATGGATCTCA GTTCTTCATTTGCACCGCCAAGACGGAGTGGCTGGACGGCAAGCACGTGG TGTTCGGCAAGGTGGTCGAGGGTCTTGACGTCGTCAAGGATGTCGAGAAG GTGGGTTCCAGCTCCGGCAAGACCTCCAAGCCCGTCGTTGTTGCTGACTG TGGACAACTCTCTTAG
back to top

Coding sequence (CDS) from alignment at Scaffold000015-KQ483641.1:258522..259037-

>rna-KK1_034461_Cc_Asha_v1.0 ID=rna-KK1_034461_Cc_Asha_v1.0; Name=rna-KK1_034461; organism=Cajanus cajan; type=CDS; length=1032bp; location=Sequence derived from: Scaffold000015-KQ483641.1:258522..259037- (Cajanus cajan
ATGAACCCTAAGGTCTTCTTCGACATGACCATCGGAGGCCAACCAGCGGG
GCGCATAGTGATGGAGTTGTTCGCCGACACAACTCCACGAACCGCTGAGA
ACTTTCGAGCGCTTTGCACCGGCGAGAAGGGCGTGGGGCGGAGCGGGAAG
CCCCTCCACTACAAGGGCTCCACATTCCACCGCGTGATCCCCAACTTCAT
GTGCCAAGGCGGGGACTTCACCGCGGGGAACGGCACCGGCGGCGAGTCCA
TCTACGGGTCGAAGTTCGCCGACGAGAACTTCATCATGAAGCACACAGGG
CCCGGCATTCTTTCGATGGCAAACGCAGGACCAGGAACCAATGGATCTCA
GTTCTTCATTTGCACCGCCAAGACGGAGTGGCTGGACGGCAAGCACGTGG
TGTTCGGCAAGGTGGTCGAGGGTCTTGACGTCGTCAAGGATGTCGAGAAG
GTGGGTTCCAGCTCCGGCAAGACCTCCAAGCCCGTCGTTGTTGCTGACTG
TGGACAACTCTCTTAGATGAACCCTAAGGTCTTCTTCGACATGACCATCG
GAGGCCAACCAGCGGGGCGCATAGTGATGGAGTTGTTCGCCGACACAACT
CCACGAACCGCTGAGAACTTTCGAGCGCTTTGCACCGGCGAGAAGGGCGT
GGGGCGGAGCGGGAAGCCCCTCCACTACAAGGGCTCCACATTCCACCGCG
TGATCCCCAACTTCATGTGCCAAGGCGGGGACTTCACCGCGGGGAACGGC
ACCGGCGGCGAGTCCATCTACGGGTCGAAGTTCGCCGACGAGAACTTCAT
CATGAAGCACACAGGGCCCGGCATTCTTTCGATGGCAAACGCAGGACCAG
GAACCAATGGATCTCAGTTCTTCATTTGCACCGCCAAGACGGAGTGGCTG
GACGGCAAGCACGTGGTGTTCGGCAAGGTGGTCGAGGGTCTTGACGTCGT
CAAGGATGTCGAGAAGGTGGGTTCCAGCTCCGGCAAGACCTCCAAGCCCG
TCGTTGTTGCTGACTGTGGACAACTCTCTTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002130Cyclophilin-type_PPIase_dom
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom_sf
IPR020892Cyclophilin-type_PPIase_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
GO:0006457protein folding