rna-KK1_027002
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 5.396e-38 Identity = 87/161 (54.04%), Postives = 116/161 (72.05%), Query Frame = 1 Query: 19 TQRNH--QKAKQLVVKSEVHNK-ERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVKRVKESLQEMRYCCCNGSSPALALKERNYIKRKMSSKARKCREKQXXXXXXXXXXXXXXDLGVEYLEQLLAISDQS 492 TQ+ + ++ L +KS K E+SY GVR+RPWGKFAAEIRD+TRNG RVWLGTFESA+ AALAYDQAAFSMRG +A+LNF +RV+ESL E++Y +G SP +ALK ++ ++R+M++K K + +VVV EDLG +YLE+LL S+ S Sbjct: 56 TQQTYIDSDSQDLPIKSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRMTNKKTKDSDFD-HRSVKLDNVVVFEDLGEQYLEELLGSSENS 215
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=ERF15 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 6.086e-29 Identity = 78/162 (48.15%), Postives = 100/162 (61.73%), Query Frame = 1 Query: 73 NKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVKRVKESLQEMRYCCC-NGSSPALALKERNYIKRKMSSKARKCRE------------------------KQXXXXXXXXXXXXXXDLGVEYLEQLLAIS 483 ++ERSY GVRKRPWGKFAAEIRD+TRNG RVWLGTF+ A+ AALAYDQAAF+ +G A LNFPV+ V+ESL++M +G SP +ALK ++ ++ + K R KQ + + ++VV EDLG EYLEQLL S Sbjct: 81 DEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPRGKKRSSSSSSSSSNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLMSS 242
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana OX=3702 GN=ERF094 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 9.117e-25 Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 1 Query: 82 RSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVKRVKESLQEMRYCCCN-GSSPALALKERNYIKRK 363 +SY GVRKRPWGKFAAEIRD+TR G RVWLGTF++A+AAALAYDQAAF+++G AVLNFP V+ESL++M N G SP +ALK ++ ++ + Sbjct: 80 KSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNR 174
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=ERF2 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.348e-20 Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1 Query: 31 HQKAKQLVVKSEVHNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVK 267 +K K+ + +E K + Y GVR+RPWGKFAAEIRD +NGARVWLGTFE+A+ AALAYD AAF MRG A+LNFP++ Sbjct: 98 EEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLR 176
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana OX=3702 GN=ERF098 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.924e-20 Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 1 Query: 73 NKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261 +K+ + GVR+RPWGKFAAEIRD +RNGAR+WLGTFE+A+ AA AYD+AAF++RGH A+LNFP Sbjct: 15 DKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFP 77
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum OX=4081 GN=PTI5 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.835e-20 Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 88 YIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVKRVKESLQEMRYCCCNGS 318 Y GVR+RPWGK+AAEIRD+ R+GARVWLGTFE+A+ AALAYD+AAF MRG A+LNFP + V S+ + C+ S Sbjct: 59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVNASVSVDKLSLCSNS 135
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum OX=4081 GN=ERF1 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.211e-19 Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1 Query: 52 VVKSEVHNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261 V + + K R Y GVR+RPWGKFAAEIRD +NGARVWLGT+ESA+ AALAY +AAF MRG A+LNFP Sbjct: 95 VAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFP 164
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum OX=4097 GN=ERF2 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.240e-18 Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 67 VHNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261 V K R Y GVR+RPWGKFAAEIRD +NGARVWLGT+E+A+ AALAYD+AA+ MRG A+LNFP Sbjct: 92 VVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 156
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana OX=3702 GN=ERF095 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.830e-18 Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1 Query: 79 ERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261 E Y GVRKRPWGK+AAEIRD+ R+GARVWLGTF +A+ AA AYD+AAF MRG A+LNFP Sbjct: 11 EMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris OX=4096 GN=ERF2 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.980e-18 Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 Query: 67 VHNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261 V K R Y GVR+RPWGKFAAEIRD +NGARVWLGT+E+A+ AALAYD+AA+ MRG A+LNFP Sbjct: 96 VVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160 The following BLAST results are available for this feature:
BLAST of rna-KK1_027002 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_027002_Cc_Asha_v1.0 ID=rna-KK1_027002_Cc_Asha_v1.0; Name=rna-KK1_027002; organism=Cajanus cajan; type=mRNA; length=519bpback to top protein sequence of rna-KK1_027002_Cc_Asha_v1.0 >rna-KK1_027002_Cc_Asha_v1.0 ID=rna-KK1_027002_Cc_Asha_v1.0; Name=rna-KK1_027002_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=172bpback to top mRNA from alignment at Scaffold000061-KQ483442.1:601684..602202+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_027002_Cc_Asha_v1.0 ID=rna-KK1_027002_Cc_Asha_v1.0; Name=rna-KK1_027002; organism=Cajanus cajan; type=mRNA; length=519bp; location=Sequence derived from: Scaffold000061-KQ483442.1:601684..602202+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Scaffold000061-KQ483442.1:601684..602202+ >rna-KK1_027002_Cc_Asha_v1.0 ID=rna-KK1_027002_Cc_Asha_v1.0; Name=rna-KK1_027002; organism=Cajanus cajan; type=CDS; length=1038bp; location=Sequence derived from: Scaffold000061-KQ483442.1:601684..602202+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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