rna-KK1_027002

Transcript Overview
Namerna-KK1_027002
Unique Namerna-KK1_027002_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length519
ProductEthylene-responsive transcription factor 1B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0661Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0662Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR583Pisum sativum Cameor genome v1aPisum sativum
ccccR199Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0860Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0861Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0846Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0848Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asccL0616Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cctifR0695Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0711Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0730Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0731Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR0772Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0773Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0799Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0495Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0651Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0535Cicer arietinum
ccccaR0920Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0874Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Vigun01g142300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.001G160200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan02g136800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_004495228.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg1803.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat3g058200.1Pisum sativum Cameor genome v1aPisum sativum
Vum_04G02210.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Hedin2.R1.3g059360.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.3g049120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va02G047980.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr01.1384Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_014656116.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr07.2529Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cr_09485.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Phvul.007G193700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun07g099100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cr_07679.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_03486.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_009957Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_027002gene-KK1_027002_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_027002rna-KK1_027002_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_027002_Cc_Asha_v1.0rna-KK1_027002_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_027002_Cc_Asha_v1.0-exon-Scaffold000061-KQ483442.1_Cc_Asha_v1.0-1571082112:601684..602202rna-KK1_027002_Cc_Asha_v1.0-exon-Scaffold000061-KQ483442.1_Cc_Asha_v1.0-1571082112:601684..602202Cajanus cajanexon
rna-KK1_027002_Cc_Asha_v1.0-exon-Scaffold000061-KQ483442.1_Cc_Asha_v1.0-1571847872:601684..602202rna-KK1_027002_Cc_Asha_v1.0-exon-Scaffold000061-KQ483442.1_Cc_Asha_v1.0-1571847872:601684..602202Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_027002_Cc_Asha_v1.0-CDS-Scaffold000061-KQ483442.1_Cc_Asha_v1.0-1571082112:601684..602202rna-KK1_027002_Cc_Asha_v1.0-CDS-Scaffold000061-KQ483442.1_Cc_Asha_v1.0-1571082112:601684..602202Cajanus cajanCDS
rna-KK1_027002_Cc_Asha_v1.0-CDS-Scaffold000061-KQ483442.1_Cc_Asha_v1.0-1571847872:601684..602202rna-KK1_027002_Cc_Asha_v1.0-CDS-Scaffold000061-KQ483442.1_Cc_Asha_v1.0-1571847872:601684..602202Cajanus cajanCDS


Homology
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.396e-38
Identity = 87/161 (54.04%), Postives = 116/161 (72.05%), Query Frame = 1
Query:   19 TQRNH--QKAKQLVVKSEVHNK-ERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVKRVKESLQEMRYCCCNGSSPALALKERNYIKRKMSSKARKCREKQXXXXXXXXXXXXXXDLGVEYLEQLLAISDQS 492
            TQ+ +    ++ L +KS    K E+SY GVR+RPWGKFAAEIRD+TRNG RVWLGTFESA+ AALAYDQAAFSMRG +A+LNF  +RV+ESL E++Y   +G SP +ALK ++ ++R+M++K  K  +          +VVV EDLG +YLE+LL  S+ S
Sbjct:   56 TQQTYIDSDSQDLPIKSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRMTNKKTKDSDFD-HRSVKLDNVVVFEDLGEQYLEELLGSSENS 215          
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=ERF15 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.086e-29
Identity = 78/162 (48.15%), Postives = 100/162 (61.73%), Query Frame = 1
Query:   73 NKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVKRVKESLQEMRYCCC-NGSSPALALKERNYIKRKMSSKARKCRE------------------------KQXXXXXXXXXXXXXXDLGVEYLEQLLAIS 483
            ++ERSY GVRKRPWGKFAAEIRD+TRNG RVWLGTF+ A+ AALAYDQAAF+ +G  A LNFPV+ V+ESL++M      +G SP +ALK ++ ++ +   K R                            KQ   +  + ++VV EDLG EYLEQLL  S
Sbjct:   81 DEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLRNRPRGKKRSSSSSSSSSNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFEDLGAEYLEQLLMSS 242          
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana OX=3702 GN=ERF094 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.117e-25
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 1
Query:   82 RSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVKRVKESLQEMRYCCCN-GSSPALALKERNYIKRK 363
            +SY GVRKRPWGKFAAEIRD+TR G RVWLGTF++A+AAALAYDQAAF+++G  AVLNFP   V+ESL++M     N G SP +ALK ++ ++ +
Sbjct:   80 KSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNR 174          
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.348e-20
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   31 HQKAKQLVVKSEVHNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVK 267
             +K K+ +  +E   K + Y GVR+RPWGKFAAEIRD  +NGARVWLGTFE+A+ AALAYD AAF MRG  A+LNFP++
Sbjct:   98 EEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLR 176          
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana OX=3702 GN=ERF098 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.924e-20
Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   73 NKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261
            +K+  + GVR+RPWGKFAAEIRD +RNGAR+WLGTFE+A+ AA AYD+AAF++RGH A+LNFP
Sbjct:   15 DKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFP 77          
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum OX=4081 GN=PTI5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.835e-20
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   88 YIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFPVKRVKESLQEMRYCCCNGS 318
            Y GVR+RPWGK+AAEIRD+ R+GARVWLGTFE+A+ AALAYD+AAF MRG  A+LNFP + V  S+   +   C+ S
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVNASVSVDKLSLCSNS 135          
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum OX=4081 GN=ERF1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.211e-19
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   52 VVKSEVHNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261
            V  + +  K R Y GVR+RPWGKFAAEIRD  +NGARVWLGT+ESA+ AALAY +AAF MRG  A+LNFP
Sbjct:   95 VAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFP 164          
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum OX=4097 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.240e-18
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   67 VHNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261
            V  K R Y GVR+RPWGKFAAEIRD  +NGARVWLGT+E+A+ AALAYD+AA+ MRG  A+LNFP
Sbjct:   92 VVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 156          
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana OX=3702 GN=ERF095 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.830e-18
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   79 ERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261
            E  Y GVRKRPWGK+AAEIRD+ R+GARVWLGTF +A+ AA AYD+AAF MRG  A+LNFP
Sbjct:   11 EMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71          
BLAST of rna-KK1_027002 vs. DB:Swiss
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris OX=4096 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.980e-18
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   67 VHNKERSYIGVRKRPWGKFAAEIRDTTRNGARVWLGTFESXXXXXXXXXXXXFSMRGHNAVLNFP 261
            V  K R Y GVR+RPWGKFAAEIRD  +NGARVWLGT+E+A+ AALAYD+AA+ MRG  A+LNFP
Sbjct:   96 VVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160          
The following BLAST results are available for this feature:
BLAST of rna-KK1_027002 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
ERF92_ARATH5.396e-3854.04Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF93_ARATH6.086e-2948.15Ethylene-responsive transcription factor 15 OS=Ara... [more]
ERF94_ARATH9.117e-2562.11Ethylene-responsive transcription factor ERF094 OS... [more]
EF101_ARATH1.348e-2062.03Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF98_ARATH1.924e-2069.84Ethylene-responsive transcription factor ERF098 OS... [more]
PTI5_SOLLC4.835e-2062.34Pathogenesis-related genes transcriptional activat... [more]
ERF1_SOLLC2.211e-1967.14Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF2_TOBAC1.240e-1870.77Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF95_ARATH1.830e-1872.13Ethylene-responsive transcription factor ERF095 OS... [more]
ERF2_NICSY1.980e-1870.77Ethylene-responsive transcription factor 2 OS=Nico... [more]
back to top
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 69..89
score: 54.46
coord: 30..41
score: 64.39
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 29..93
e-value: 1.6E-33
score: 127.3
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 29..80
e-value: 2.2E-12
score: 47.0
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 29..87
score: 21.97
IPR001471AP2/ERF domainCDDcd00018AP2coord: 30..88
e-value: 1.39419E-16
score: 68.0671
IPR017392AP2/ERF transcription factor ERF/PTI6PIRSFPIRSF038123PTI6coord: 4..167
e-value: 4.3E-23
score: 80.2
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10coord: 28..89
e-value: 1.2E-28
score: 100.6
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 30..88

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_027002_Cc_Asha_v1.0 ID=rna-KK1_027002_Cc_Asha_v1.0; Name=rna-KK1_027002; organism=Cajanus cajan; type=mRNA; length=519bp
ATGGTTGACCTTTCCTTCACACAAAGAAACCACCAAAAGGCCAAGCAATT
GGTGGTAAAGTCTGAGGTGCATAACAAGGAAAGGTCATACATAGGTGTGA
GGAAAAGGCCATGGGGAAAATTTGCAGCAGAGATCAGAGACACAACAAGG
AACGGTGCAAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGATGCTGCTGC
TTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTAC
TAAACTTTCCAGTCAAAAGGGTCAAAGAGTCTTTGCAAGAGATGCGATAT
TGCTGCTGCAATGGATCTTCTCCTGCACTTGCACTCAAGGAGAGGAACTA
CATCAAAAGAAAAATGTCATCAAAAGCTAGAAAGTGTAGAGAGAAACAAG
AATCATCAGAGTCAGCAACATCGAGTGTGGTTGTGTTAGAGGACTTGGGA
GTTGAATATCTAGAGCAACTTCTCGCCATATCGGATCAAAGTGTAAGCTT
ATCTCCTGCTATGAATTAA
back to top

protein sequence of rna-KK1_027002_Cc_Asha_v1.0

>rna-KK1_027002_Cc_Asha_v1.0 ID=rna-KK1_027002_Cc_Asha_v1.0; Name=rna-KK1_027002_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=172bp
MVDLSFTQRNHQKAKQLVVKSEVHNKERSYIGVRKRPWGKFAAEIRDTTR
NGARVWLGTFESADAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEMRY
CCCNGSSPALALKERNYIKRKMSSKARKCREKQESSESATSSVVVLEDLG
VEYLEQLLAISDQSVSLSPAMN
back to top

mRNA from alignment at Scaffold000061-KQ483442.1:601684..602202+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_027002_Cc_Asha_v1.0 ID=rna-KK1_027002_Cc_Asha_v1.0; Name=rna-KK1_027002; organism=Cajanus cajan; type=mRNA; length=519bp; location=Sequence derived from: Scaffold000061-KQ483442.1:601684..602202+ (Cajanus cajan
ATGGTTGACCTTTCCTTCACACAAAGAAACCACCAAAAGGCCAAGCAATT GGTGGTAAAGTCTGAGGTGCATAACAAGGAAAGGTCATACATAGGTGTGA GGAAAAGGCCATGGGGAAAATTTGCAGCAGAGATCAGAGACACAACAAGG AACGGTGCAAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGATGCTGCTGC TTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTAC TAAACTTTCCAGTCAAAAGGGTCAAAGAGTCTTTGCAAGAGATGCGATAT TGCTGCTGCAATGGATCTTCTCCTGCACTTGCACTCAAGGAGAGGAACta catcaaaagaaaaatgtcatcAAAAGCTAGAAAGTGTAGAGAGAAACAAG AATCATCAGAGTCAGCAACATCGAGTGTGGTTGTGTTAGAGGACTTGGGA GTTGAATATCTAGAGCAACTTCTCGCCATATCGGATCAAAGTGTAAGCTT ATCTCCTGCTATGAATTAA
back to top

Coding sequence (CDS) from alignment at Scaffold000061-KQ483442.1:601684..602202+

>rna-KK1_027002_Cc_Asha_v1.0 ID=rna-KK1_027002_Cc_Asha_v1.0; Name=rna-KK1_027002; organism=Cajanus cajan; type=CDS; length=1038bp; location=Sequence derived from: Scaffold000061-KQ483442.1:601684..602202+ (Cajanus cajan
ATGGTTGACCTTTCCTTCACACAAAGAAACCACCAAAAGGCCAAGCAATT
GGTGGTAAAGTCTGAGGTGCATAACAAGGAAAGGTCATACATAGGTGTGA
GGAAAAGGCCATGGGGAAAATTTGCAGCAGAGATCAGAGACACAACAAGG
AACGGTGCAAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGATGCTGCTGC
TTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTAC
TAAACTTTCCAGTCAAAAGGGTCAAAGAGTCTTTGCAAGAGATGCGATAT
TGCTGCTGCAATGGATCTTCTCCTGCACTTGCACTCAAGGAGAGGAACta
catcaaaagaaaaatgtcatcAAAAGCTAGAAAGTGTAGAGAGAAACAAG
AATCATCAGAGTCAGCAACATCGAGTGTGGTTGTGTTAGAGGACTTGGGA
GTTGAATATCTAGAGCAACTTCTCGCCATATCGGATCAAAGTGTAAGCTT
ATCTCCTGCTATGAATTAAATGGTTGACCTTTCCTTCACACAAAGAAACC
ACCAAAAGGCCAAGCAATTGGTGGTAAAGTCTGAGGTGCATAACAAGGAA
AGGTCATACATAGGTGTGAGGAAAAGGCCATGGGGAAAATTTGCAGCAGA
GATCAGAGACACAACAAGGAACGGTGCAAGGGTTTGGCTTGGAACCTTTG
AGAGTGCAGATGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATG
AGAGGCCATAATGCTGTACTAAACTTTCCAGTCAAAAGGGTCAAAGAGTC
TTTGCAAGAGATGCGATATTGCTGCTGCAATGGATCTTCTCCTGCACTTG
CACTCAAGGAGAGGAACtacatcaaaagaaaaatgtcatcAAAAGCTAGA
AAGTGTAGAGAGAAACAAGAATCATCAGAGTCAGCAACATCGAGTGTGGT
TGTGTTAGAGGACTTGGGAGTTGAATATCTAGAGCAACTTCTCGCCATAT
CGGATCAAAGTGTAAGCTTATCTCCTGCTATGAATTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR017392AP2/ERF-transcript_factor
IPR036955AP2/ERF_dom_sf
IPR016177DNA-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding