Transcript Overview
Name | Vigun01g036000.1 |
Unique Name | Vigun01g036000.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 444 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g036000.1 | Vigun01g036000.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun01g036000.1_Vu_IT97K-499-35_v1.1 | Vigun01g036000.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g036000.1.v1.1.CDS.1 | Vigun01g036000.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g036000.1.v1.1.CDS.2 | Vigun01g036000.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR016140 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain | PFAM | PF14368 | LTP_2 | coord: 37..103 e-value: 3.5E-9 score: 36.7 |
None | No IPR available | GENE3D | 1.10.110.10 | | coord: 27..100 e-value: 6.0E-12 score: 47.2 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 104..147 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 106..147 |
None | No IPR available | CDD | cd04660 | nsLTP_like | coord: 30..103 e-value: 3.55303E-12 score: 56.2234 |
IPR036312 | Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily | SUPERFAMILY | 47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | coord: 30..100 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g036000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g036000.1; organism=Vigna unguiculata; type=mRNA; length=444bp ATGGAAAGCACGATGAGAAGCAAGTGCGTAATGATCTTGGGGATGGTTGG AGTTATAGTGTTATGTGGTGATGTTGTTGTAGGGCAGTGCTCTGGCATGG GAGGGCTCATAAAGGAATGTGGGGTGTATGTTAAAAGGTCTGGTCCTCAG ATGAATCCCTCAAGAAAGTGCTGTGAAGAGATAAAGAATGCAGATGTTGC ATGCGTGTGTAACCACTTAACCAACCATATGCTTCAGCTTATTGATATCC AGAAGCTGCATAATGTTGCAGATTCATGTGGAAGACCAATACCCTCTGGA ACCAAGTGTGGAGGTATTATATCTAATAAGGAGAAAACCGATTCCAACTC ATCTACTCAAACTTCTGCACCCATTATACCTACAGCCGATACCAACTCAT CTACTCCATTCACGGAAGGTCCCTCCAGTTTCACCATCTCATAG back to topprotein sequence of Vigun01g036000.1_Vu_IT97K-499-35_v1.1 >Vigun01g036000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=148bp MESTMRSKCVMILGMVGVIVLCGDVVVGQCSGMGGLIKECGVYVKRSGPQ MNPSRKCCEEIKNADVACVCNHLTNHMLQLIDIQKLHNVADSCGRPIPSG TKCGGIISNKEKTDSNSSTQTSAPIIPTADTNSSTPFTEGPSSFTIS* back to topmRNA from alignment at Vu01:4653002..4653618+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun01g036000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g036000.1; organism=Vigna unguiculata; type=mRNA; length=617bp; location=Sequence derived from: Vu01:4653002..4653618+ (Vigna unguiculata ATGGAAAGCACGATGAGAAGCAAGTGCGTAATGATCTTGGGGATGGTTGG
AGTTATAGTGTTATGTGGTGATGTTGTTGTAGGGCAGTGCTCTGGCATGG
GAGGGCTCATAAAGGAATGTGGGGTGTATGTTAAAAGGTCTGGTCCTCAG
ATGAATCCCTCAAGAAAGTGCTGTGAAGAGATAAAGAATGCAGATGTTGC
ATGCGTGTGTAACCACTTAACCAACCATATGCTTCAGCTTATTGATATCC
AGAAGCTGCATAATGTTGCAGATTCATGTGGAAGACCAATACCCTCTGGA
ACCAAGTGTGGAGGTATTATATGTATATAGAATTGAAAATATGTTTTTGG
TTTCGATCTCATCTTAGTTTATGTTTTGGATTAGATGAAGTTGCAGCTGG
ACCTAAATCTGGTGATGTCATCAACTCGCCTCCACAACATATCGAATCCC
AAGTTCCACCTAAGCAGAAAACCGATTCCAACTTTCAAGTTTCAGCTAAT
AAGGAGAAAACCGATTCCAACTCATCTACTCAAACTTCTGCACCCATTAT
ACCTACAGCCGATACCAACTCATCTACTCCATTCACGGAAGGTCCCTCCA
GTTTCACCATCTCATAG back to topCoding sequence (CDS) from alignment at Vu01:4653002..4653618+ >Vigun01g036000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g036000.1; organism=Vigna unguiculata; type=CDS; length=444bp; location=Sequence derived from: Vu01:4653002..4653618+ (Vigna unguiculata ATGGAAAGCACGATGAGAAGCAAGTGCGTAATGATCTTGGGGATGGTTGG AGTTATAGTGTTATGTGGTGATGTTGTTGTAGGGCAGTGCTCTGGCATGG GAGGGCTCATAAAGGAATGTGGGGTGTATGTTAAAAGGTCTGGTCCTCAG ATGAATCCCTCAAGAAAGTGCTGTGAAGAGATAAAGAATGCAGATGTTGC ATGCGTGTGTAACCACTTAACCAACCATATGCTTCAGCTTATTGATATCC AGAAGCTGCATAATGTTGCAGATTCATGTGGAAGACCAATACCCTCTGGA ACCAAGTGTGGAGGTATTATATCTAATAAGGAGAAAACCGATTCCAACTC ATCTACTCAAACTTCTGCACCCATTATACCTACAGCCGATACCAACTCAT CTACTCCATTCACGGAAGGTCCCTCCAGTTTCACCATCTCATAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR016140 | Bifunc_inhib/LTP/seed_store |
IPR036312 | Bifun_inhib/LTP/seed_sf |
|