Vigun01g048300.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MD22B_ARATH (Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana OX=3702 GN=MED22B PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.091e-58 Identity = 85/115 (73.91%), Postives = 104/115 (90.43%), Query Frame = 1 Query: 109 RVEGDIANIVDNFSHLVNVARVNDPPVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSAQK 453
RVE DI ++VDNF+ +VNV+RV+DPPV+NSQE +MMEMR++RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR EF+Q AEKT+ L+++ ++A+ANLKELESHY SSAQ+
Sbjct: 35 RVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADDASANLKELESHYYSSAQR 149
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MD22A_ARATH (Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana OX=3702 GN=MED22A PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.256e-57 Identity = 83/116 (71.55%), Postives = 106/116 (91.38%), Query Frame = 1 Query: 109 RVEGDIANIVDNFSHLVNVARVNDPPVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSAQKT 456
RV+ DI ++VDNF+ +VNVARV+DPP++NSQEA+MMEMR++R+VQAADSLLKLVSELKQTAIFSGFASLNDHVEQR EF+Q AEKT+ L+++ ++A+A+LKELESHY SSAQ++
Sbjct: 32 RVDTDITSVVDNFNQIVNVARVSDPPMKNSQEAYMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRLLARIADDASASLKELESHYYSSAQRS 147
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_DICDI (Putative mediator of RNA polymerase II transcription subunit 22 OS=Dictyostelium discoideum OX=44689 GN=med22 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.857e-19 Identity = 37/121 (30.58%), Postives = 80/121 (66.12%), Query Frame = 1 Query: 91 QKTLLQRVEGDIANIVDNFSHLVNVARVNDPPVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSAQK 453
Q+ ++++ I +++N+ +++ +++VNDP ++N+ E + ME R++ M+ A + LLK++ ELKQ I + F+++ + V + + F++ E+T+ ++ + EE + +LKELE Y +S+ K
Sbjct: 22 QQFFQKQIDSKIMQLLENYHNIIKISKVNDP-LKNASEIYEMETRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSIKLISEELSRSLKELEDEYYNSSYK 141
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_DANRE (Mediator of RNA polymerase II transcription subunit 22 OS=Danio rerio OX=7955 GN=med22 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.517e-18 Identity = 49/130 (37.69%), Postives = 78/130 (60.00%), Query Frame = 1 Query: 85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSA 447
Q ++TLLQ R++ DI +I+DNF+ ++ A+V D + Q+ F M +R+A +V+A +SL+KLVS+LKQ I + F S+N+ + R + L E+ D L + +E A +L ELE Y SS+
Sbjct: 9 QSKETLLQNYNKRLKDDIRSILDNFTEIIKTAKVEDETQVSRATQAEQDHFEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEECDKKLISLRDEIAIDLYELEEEYYSSS 138
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_MOUSE (Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus OX=10090 GN=Med22 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 7.025e-15 Identity = 40/116 (34.48%), Postives = 71/116 (61.21%), Query Frame = 1 Query: 85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAA 405
Q ++TLLQ R++ DI +I+DNF+ ++ A++ D + Q+ + M +R+A +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + L E+ D L + +E +
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVS 124
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_RAT (Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus OX=10116 GN=Med22 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.326e-15 Identity = 40/116 (34.48%), Postives = 71/116 (61.21%), Query Frame = 1 Query: 85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAA 405
Q ++TLLQ R++ DI +I+DNF+ ++ A++ D + Q+ + M +R+A +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + L E+ D L + +E +
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVS 124
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_HUMAN (Mediator of RNA polymerase II transcription subunit 22 OS=Homo sapiens OX=9606 GN=MED22 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 7.326e-15 Identity = 40/114 (35.09%), Postives = 70/114 (61.40%), Query Frame = 1 Query: 85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEE 399
Q ++TLLQ R++ DI +I+DNF+ ++ A++ D + Q+ + M +R+A +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + L E+ D L + +E
Sbjct: 9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDE 122
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_BOVIN (Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus OX=9913 GN=MED22 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.652e-14 Identity = 39/114 (34.21%), Postives = 70/114 (61.40%), Query Frame = 1 Query: 85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEE 399
Q ++TLLQ R++ D+ +I+DNF+ ++ A++ D + Q+ + M +R+A +V+A +SL+KLVS+LKQ I + F S+N+ ++QR + L E+ D L + +E
Sbjct: 9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDE 122
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_TAKRU (Mediator of RNA polymerase II transcription subunit 22 OS=Takifugu rubripes OX=31033 GN=med22 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 2.023e-14 Identity = 40/118 (33.90%), Postives = 71/118 (60.17%), Query Frame = 1 Query: 85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDP-----PVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAAN 411
Q ++TLLQ R++ DI +I++NF+ ++ A++ D P + Q+ + M +R+A +V+A +SL+KLVS+LKQ I + F S+ND + + + L E+ D L + +E A +
Sbjct: 9 QSKETLLQSYNKRLKDDIKSILENFTEIIKTAKIEDETQVSRPAQAEQDHYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNDAISLQNQQLRSLQEECDKKLISLRDEIAID 126
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_CHICK (Mediator of RNA polymerase II transcription subunit 22 OS=Gallus gallus OX=9031 GN=MED22 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.823e-14 Identity = 39/114 (34.21%), Postives = 70/114 (61.40%), Query Frame = 1 Query: 85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEE 399
Q ++TLLQ R++ D+ +I+DNF+ ++ A++ D ++ Q+ + M +R+A +V+A +SL+KLVS+LKQ I + F S+N+ + QR + L E+ D L + +E
Sbjct: 9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQSEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEECDKKLIALRDE 122 The following BLAST results are available for this feature:
BLAST of Vigun01g048300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g048300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g048300.1; organism=Vigna unguiculata; type=mRNA; length=923bpback to top protein sequence of Vigun01g048300.1_Vu_IT97K-499-35_v1.1 >Vigun01g048300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=159bpback to top mRNA from alignment at Vu01:7220468..7223250+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g048300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g048300.1; organism=Vigna unguiculata; type=mRNA; length=2783bp; location=Sequence derived from: Vu01:7220468..7223250+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:7220468..7223250+ >Vigun01g048300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g048300.1; organism=Vigna unguiculata; type=CDS; length=477bp; location=Sequence derived from: Vu01:7220468..7223250+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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