Vigun01g048300.1

Transcript Overview
NameVigun01g048300.1
Unique NameVigun01g048300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length923
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:7220468..7223250 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
psvuL000Pisum sativum Cameor genome v1aPisum sativum
crvuL005Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL006Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL468Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL001Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL007Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anvuL0542Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0550Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0863Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1151Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1157Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL570Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR000Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR006Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL001Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuL006Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL001Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL006Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL322Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL165Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL169Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR001Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL001Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL006Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL498Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL000Cicer arietinum
carvuL006Cicer arietinum
ccavuL075Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR054Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvuL490Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL502Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL399Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vum_07G01504.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr01.416Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_014645060.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va05G009350.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.1g403840.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_28818Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_24671.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat01G0364500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Tiffany.R1.1g331040.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan05g040600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.005G043700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr05.224Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigan.07G198600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.07G130200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_13913Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004488547.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg12566.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_02199.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g048300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g048300Vigun01g048300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g048300.1_Vu_IT97K-499-35_v1.1Vigun01g048300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide
Vigun01g048300.1Vigun01g048300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g048300.1.v1.1.five_prime_UTR.1Vigun01g048300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g048300.1.v1.1.CDS.1Vigun01g048300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun01g048300.1.v1.1.CDS.2Vigun01g048300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun01g048300.1.v1.1.CDS.3Vigun01g048300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g048300.1.v1.1.three_prime_UTR.1Vigun01g048300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MD22B_ARATH (Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana OX=3702 GN=MED22B PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.091e-58
Identity = 85/115 (73.91%), Postives = 104/115 (90.43%), Query Frame = 1 
Query:  109 RVEGDIANIVDNFSHLVNVARVNDPPVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSAQK 453
            RVE DI ++VDNF+ +VNV+RV+DPPV+NSQE +MMEMR++RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR  EF+Q AEKT+  L+++ ++A+ANLKELESHY SSAQ+
Sbjct:   35 RVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADDASANLKELESHYYSSAQR 149
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MD22A_ARATH (Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana OX=3702 GN=MED22A PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.256e-57
Identity = 83/116 (71.55%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:  109 RVEGDIANIVDNFSHLVNVARVNDPPVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSAQKT 456
            RV+ DI ++VDNF+ +VNVARV+DPP++NSQEA+MMEMR++R+VQAADSLLKLVSELKQTAIFSGFASLNDHVEQR  EF+Q AEKT+  L+++ ++A+A+LKELESHY SSAQ++
Sbjct:   32 RVDTDITSVVDNFNQIVNVARVSDPPMKNSQEAYMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRLLARIADDASASLKELESHYYSSAQRS 147
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_DICDI (Putative mediator of RNA polymerase II transcription subunit 22 OS=Dictyostelium discoideum OX=44689 GN=med22 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.857e-19
Identity = 37/121 (30.58%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:   91 QKTLLQRVEGDIANIVDNFSHLVNVARVNDPPVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSAQK 453
            Q+   ++++  I  +++N+ +++ +++VNDP ++N+ E + ME R++ M+ A + LLK++ ELKQ  I + F+++ + V  + + F++  E+T+ ++  + EE + +LKELE  Y +S+ K
Sbjct:   22 QQFFQKQIDSKIMQLLENYHNIIKISKVNDP-LKNASEIYEMETRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSIKLISEELSRSLKELEDEYYNSSYK 141
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_DANRE (Mediator of RNA polymerase II transcription subunit 22 OS=Danio rerio OX=7955 GN=med22 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.517e-18
Identity = 49/130 (37.69%), Postives = 78/130 (60.00%), Query Frame = 1 
Query:   85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSA 447
            Q ++TLLQ    R++ DI +I+DNF+ ++  A+V D        +  Q+ F M +R+A +V+A +SL+KLVS+LKQ  I + F S+N+ +  R  +   L E+ D  L  + +E A +L ELE  Y SS+
Sbjct:    9 QSKETLLQNYNKRLKDDIRSILDNFTEIIKTAKVEDETQVSRATQAEQDHFEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEECDKKLISLRDEIAIDLYELEEEYYSSS 138
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_MOUSE (Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus OX=10090 GN=Med22 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 7.025e-15
Identity = 40/116 (34.48%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:   85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAA 405
            Q ++TLLQ    R++ DI +I+DNF+ ++  A++ D        +  Q+ + M +R+A +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +   L E+ D  L  + +E +
Sbjct:    9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVS 124
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_RAT (Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus OX=10116 GN=Med22 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.326e-15
Identity = 40/116 (34.48%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:   85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAA 405
            Q ++TLLQ    R++ DI +I+DNF+ ++  A++ D        +  Q+ + M +R+A +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +   L E+ D  L  + +E +
Sbjct:    9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVS 124
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_HUMAN (Mediator of RNA polymerase II transcription subunit 22 OS=Homo sapiens OX=9606 GN=MED22 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.326e-15
Identity = 40/114 (35.09%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:   85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEE 399
            Q ++TLLQ    R++ DI +I+DNF+ ++  A++ D        +  Q+ + M +R+A +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +   L E+ D  L  + +E
Sbjct:    9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDE 122
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_BOVIN (Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus OX=9913 GN=MED22 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.652e-14
Identity = 39/114 (34.21%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:   85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEE 399
            Q ++TLLQ    R++ D+ +I+DNF+ ++  A++ D        +  Q+ + M +R+A +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +   L E+ D  L  + +E
Sbjct:    9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDE 122
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_TAKRU (Mediator of RNA polymerase II transcription subunit 22 OS=Takifugu rubripes OX=31033 GN=med22 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.023e-14
Identity = 40/118 (33.90%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:   85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDP-----PVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAAN 411
            Q ++TLLQ    R++ DI +I++NF+ ++  A++ D      P +  Q+ + M +R+A +V+A +SL+KLVS+LKQ  I + F S+ND +  +  +   L E+ D  L  + +E A +
Sbjct:    9 QSKETLLQSYNKRLKDDIKSILENFTEIIKTAKIEDETQVSRPAQAEQDHYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNDAISLQNQQLRSLQEECDKKLISLRDEIAID 126
[Close]
BLAST of Vigun01g048300.1 vs. DB:Swiss
Match: MED22_CHICK (Mediator of RNA polymerase II transcription subunit 22 OS=Gallus gallus OX=9031 GN=MED22 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.823e-14
Identity = 39/114 (34.21%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:   85 QKQKTLLQ----RVEGDIANIVDNFSHLVNVARVNDPP-----VRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEE 399
            Q ++TLLQ    R++ D+ +I+DNF+ ++  A++ D        ++ Q+ + M +R+A +V+A +SL+KLVS+LKQ  I + F S+N+ + QR  +   L E+ D  L  + +E
Sbjct:    9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQSEQDNYEMHVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEECDKKLIALRDE 122
The following BLAST results are available for this feature:
BLAST of Vigun01g048300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
MD22B_ARATH1.091e-5873.91Mediator of RNA polymerase II transcription subuni... [more]
MD22A_ARATH1.256e-5771.55Mediator of RNA polymerase II transcription subuni... [more]
MED22_DICDI4.857e-1930.58Putative mediator of RNA polymerase II transcripti... [more]
MED22_DANRE1.517e-1837.69Mediator of RNA polymerase II transcription subuni... [more]
MED22_MOUSE7.025e-1534.48Mediator of RNA polymerase II transcription subuni... [more]
MED22_RAT7.326e-1534.48Mediator of RNA polymerase II transcription subuni... [more]
MED22_HUMAN7.326e-1535.09Mediator of RNA polymerase II transcription subuni... [more]
MED22_BOVIN1.652e-1434.21Mediator of RNA polymerase II transcription subuni... [more]
MED22_TAKRU2.023e-1433.90Mediator of RNA polymerase II transcription subuni... [more]
MED22_CHICK2.823e-1434.21Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038427MED22 superfamilyGENE3D1.20.58.1600coord: 21..153
e-value: 1.0E-28
score: 101.9
IPR009332Mediator of RNA polymerase II transcription subunit 22PFAMPF06179Med22coord: 36..135
e-value: 6.2E-26
score: 90.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g048300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g048300.1; organism=Vigna unguiculata; type=mRNA; length=923bp
TTAGTTTGTGGCTTGGAGTAAGCGAGTATCAGACACAGTTGAAGGGTTTT
CCATTTTCCCAATCTCAGGCATTTTTTCCACACTGAGAAGTAAAAACCCA
TTGAAATAGAATGAACAAAGGTGGAGCAGCGGGATTAGGAGGTGGCGCCG
GTGCCGGAAGCGGACCCACTGCGGCAGCCGCTTCAGCCGCAGCGCAGAAG
CAGAAGACGCTGTTGCAAAGGGTCGAAGGTGATATTGCCAATATTGTTGA
TAACTTTAGCCACCTCGTCAACGTTGCAAGGGTCAATGACCCACCAGTTA
GAAACTCACAGGAAGCTTTTATGATGGAGATGCGTTCTGCTAGGATGGTT
CAGGCAGCTGATTCTCTGTTGAAGTTGGTTTCAGAGCTGAAGCAGACTGC
AATATTTTCAGGATTTGCCTCTCTTAATGATCATGTAGAACAAAGAAGAA
TTGAATTTAATCAACTAGCCGAAAAAACTGATCATACTTTATCCAAAGTT
GGGGAGGAAGCTGCTGCTAACCTAAAAGAACTTGAATCTCATTATAGTTC
TTCAGCACAGAAGACCATGCAAAACCTGCAACCATAGTTAAGAATCTCTA
TATGCAGTATGTGGATCATGCTTTACACAGTATAGTAGTTTTTAATTTTG
GTTTCAAATATGTTCTTTCTTTACTGAGAACATGGAAAACAAAATAGGAG
CGCTCATTTTGAGTTAGTTTATGGATGTAATTAGCATATTAGATGAGGAT
TTAACTAGGAAAGGGTCAAAAATTCACTTCTTATGATTACAATTACTGAA
AGTCAAGGAATTTAAGATTATGTGGTTGTTGTAACATGTTTCTTTAGGAC
GGGAATGTGATAACTTTTTATTGAAATTAAAGATACGATGTGTTAAGACT
ATGATGATAAAAAACTATATATA
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protein sequence of Vigun01g048300.1_Vu_IT97K-499-35_v1.1

>Vigun01g048300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=159bp
MNKGGAAGLGGGAGAGSGPTAAAASAAAQKQKTLLQRVEGDIANIVDNFS
HLVNVARVNDPPVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFS
GFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSAQ
KTMQNLQP*
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mRNA from alignment at Vu01:7220468..7223250+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g048300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g048300.1; organism=Vigna unguiculata; type=mRNA; length=2783bp; location=Sequence derived from: Vu01:7220468..7223250+ (Vigna unguiculata
TTAGTTTGTGGCTTGGAGTAAGCGAGTATCAGACACAGTTGAAGGGTTTT
CCATTTTCCCAATCTCAGGCATTTTTTCCACACTGAGAAGTAAAAACCCA
TTGAAATAGAATGAACAAAGGTGGAGCAGCGGGATTAGGAGGTGGCGCCG
GTGCCGGAAGCGGACCCACTGCGGCAGCCGCTTCAGCCGCAGCGCAGAAG
CAGAAGACGCTGTTGCAAAGGGTCGAAGGTGATATTGCCAATATTGTTGA
TAACTTTAGCCACCTCGTCAACGTTGCAAGGGTATTCCTTTCTTTTCTAC
TTATTTTACCAACTAAAAGCTCTTCTAGAGAAGTTTGTCCAAACAAGATG
TTCAGTTCACCCAAACAATGTTCAATTCATCCAAACAATTTAATTCATGT
TAACCATGAAAAACACAAATTTTTAATTTCTCTTTTTAAGAAGTTATGTG
TGGGATAAGTCTGAGCCTTTAATTGTGTGTTAAACCATGGCCTTTGGAGC
AATAGCATGGATGATAAGAAGAAAGGTTTTAAATTGATTTCGTATATTCC
TTGTGTTACTTGATATTGAGAGTGCCCATGAGCAGTGTCATTAAAGTTGC
AGTAGTTTGCTGTTGTAGAGAGTAGAAACACTGAGAACGGTTGCAGTTGT
TCTTAATTACCTGGGTTAGAAGTGAAGAAAAGAGGGGTGACATTGAGGAT
GAGTGAAATTGTTTATCTGATAGAATGCAATTTAAGGTGAGAAATCTTTT
GTATTTTTGTCAAAAAACCAATTATGGTGAGAAATCGTTTGATAGGTTTA
GGTTTCGTCACTGCCTTGTGAATGTGAATTTGGGTAAACATTTACGGAGT
CATTTTTTTATGATTTTAATTTCACAAAATCGACTTCGGTTGAAAATGAT
TTAAAAGTGAAGTGATTTATGTTTAGAGACTTGTATGTTGAAAGTGAGTT
TGTTGCAACACTTTCTCAGCTCGAAGATGTATTGTGTTGCTTCTAGCTGT
TGTTATGAGCAAGACAAGTTTGATTTGAGACAATAAAATATTAATGTTTT
TCTTTTAGGGTAAATTGCATTTGGTACCCTAATGTCAGTTTGGCTGTCCA
AACCGCCTATCCGGACATATTCTTATTCATTGAGAGGCTGAGATAATGAG
TATTTTCTTTTAAAGAATGACCAAAGGAGACCAAAACTTCATTATGGAAG
AGTCTCTTATGAAGAAAACTCTTAAAATAACTTGATGATGTCTCTACATC
CAGGATCTATTATGGTTTTACTCTTTTTTGGTGCCTACCATTGCTCAAGT
AGGTTGGGAGGGAGTTGAATTATAAGATAAACATAATATATTTAGACAGA
TAGTAATAAATTTATTCGGAGTGGTTAACCTTCGGCATGGGAAATTGTGT
ATGGTTCAGTTACAATTTCAAGAAAAAGATAACCCAGCTGTAATTTTGTG
ATTCCGTAAAATTGGTGAGTTGGTCTCTACCAATGAACTAGTTTCTTGTT
CACATTTCCTCATTTAGATGTTGACAAAGACTATCTTTCTCTTCATTGAT
AGTCACTATTTATTTATCCACTTTTTCCTTCTCATTAATGCACTGGTGTG
TGTCAACAGCCACTATGCATGCATGGGGTTGTGGATGATTTAGTTTTTAA
GCTGACCTGAGCCCTGTTCTGATCCCAAGGGTGTAAAAATTGGGAATGTC
TTCAATATATTAACACACTAAAATTATGAGCATCTTGTTATTTCTACTTA
ACAAATGCAGTCTTGCAGGTCAATGACCCACCAGTTAGAAACTCACAGGA
AGCTTTTATGATGGAGATGCGTTCTGCTAGGATGGTGAGAGTGCTTTTTC
TGTTCATTCTAGTGCTTCTGAACAAGAATGGTTATGAAGATATATTTTTT
AACTTGAATTTTATACATCAGAATCTTAAGGATTACTGTGGAGAGAAATT
TGCTTGTGATAGATTATGTCTGGGAACACTGGAAATATTACAGACTCTAT
AGTTACCTCTTATATAATGCAGAGTTAATTGAATTATAATTTTGTTTTCA
TTCATATTAACTTACTTCTTTCAAATGTCGCAATGTCATTCTCTCCATTG
TTCTGTTTTGTGAGACTTGTTAAGTATGGTTAAGTTGACAAGGTTTAGTA
AGAGTCACTGAAATCTATTCGTTTTCTGTTTATTTTTTATATTGATTTAT
TACACAGGTTCAGGCAGCTGATTCTCTGTTGAAGTTGGTTTCAGAGCTGA
AGCAGACTGCAATATTTTCAGGATTTGCCTCTCTTAATGATCATGTAGAA
CAAAGAAGAATTGAATTTAATCAACTAGCCGAAAAAACTGATCATACTTT
ATCCAAAGTTGGGGAGGAAGCTGCTGCTAACCTAAAAGAACTTGAATCTC
ATTATAGTTCTTCAGCACAGAAGACCATGCAAAACCTGCAACCATAGTTA
AGAATCTCTATATGCAGTATGTGGATCATGCTTTACACAGTATAGTAGTT
TTTAATTTTGGTTTCAAATATGTTCTTTCTTTACTGAGAACATGGAAAAC
AAAATAGGAGCGCTCATTTTGAGTTAGTTTATGGATGTAATTAGCATATT
AGATGAGGATTTAACTAGGAAAGGGTCAAAAATTCACTTCTTATGATTAC
AATTACTGAAAGTCAAGGAATTTAAGATTATGTGGTTGTTGTAACATGTT
TCTTTAGGACGGGAATGTGATAACTTTTTATTGAAATTAAAGATACGATG
TGTTAAGACTATGATGATAAAAAACTATATATA
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Coding sequence (CDS) from alignment at Vu01:7220468..7223250+

>Vigun01g048300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g048300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g048300.1; organism=Vigna unguiculata; type=CDS; length=477bp; location=Sequence derived from: Vu01:7220468..7223250+ (Vigna unguiculata
ATGAACAAAGGTGGAGCAGCGGGATTAGGAGGTGGCGCCGGTGCCGGAAG
CGGACCCACTGCGGCAGCCGCTTCAGCCGCAGCGCAGAAGCAGAAGACGC
TGTTGCAAAGGGTCGAAGGTGATATTGCCAATATTGTTGATAACTTTAGC
CACCTCGTCAACGTTGCAAGGGTCAATGACCCACCAGTTAGAAACTCACA
GGAAGCTTTTATGATGGAGATGCGTTCTGCTAGGATGGTTCAGGCAGCTG
ATTCTCTGTTGAAGTTGGTTTCAGAGCTGAAGCAGACTGCAATATTTTCA
GGATTTGCCTCTCTTAATGATCATGTAGAACAAAGAAGAATTGAATTTAA
TCAACTAGCCGAAAAAACTGATCATACTTTATCCAAAGTTGGGGAGGAAG
CTGCTGCTAACCTAAAAGAACTTGAATCTCATTATAGTTCTTCAGCACAG
AAGACCATGCAAAACCTGCAACCATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR038427MED22_sf
IPR009332Med22
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex