Transcript Overview
| Name | Vigun01g087500.2 |
|---|
| Unique Name | Vigun01g087500.2_Vu_IT97K-499-35_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna unguiculata (cowpea) |
|---|
| Sequence length | 1281 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g087500.2 | Vigun01g087500.2_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun01g087500.2_Vu_IT97K-499-35_v1.1 | Vigun01g087500.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g087500.2.v1.1.five_prime_UTR.1 | Vigun01g087500.2.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g087500.2.v1.1.CDS.1 | Vigun01g087500.2.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.2 | Vigun01g087500.2.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.3 | Vigun01g087500.2.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.4 | Vigun01g087500.2.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.5 | Vigun01g087500.2.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.6 | Vigun01g087500.2.v1.1.CDS.6_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.7 | Vigun01g087500.2.v1.1.CDS.7_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.8 | Vigun01g087500.2.v1.1.CDS.8_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.9 | Vigun01g087500.2.v1.1.CDS.9_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.10 | Vigun01g087500.2.v1.1.CDS.10_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.11 | Vigun01g087500.2.v1.1.CDS.11_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g087500.2.v1.1.CDS.12 | Vigun01g087500.2.v1.1.CDS.12_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g087500.2.v1.1.three_prime_UTR.1 | Vigun01g087500.2.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR012349 | FMN-binding split barrel | GENE3D | 2.30.110.10 | | coord: 68..221
e-value: 3.4E-35
score: 123.1 |
| None | No IPR available | PFAM | PF13883 | Pyrid_oxidase_2 | coord: 92..215
e-value: 5.3E-13
score: 49.3 |
| None | No IPR available | SUPERFAMILY | 50475 | FMN-binding split barrel | coord: 88..322 |
| IPR019595 | Domain of unknown function DUF2470 | PFAM | PF10615 | DUF2470 | coord: 245..318
e-value: 4.9E-15
score: 55.9 |
| IPR037119 | Haem oxygenase HugZ-like superfamily | GENE3D | 3.20.180.10 | | coord: 237..326
e-value: 6.0E-22
score: 79.9 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g087500.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g087500.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g087500.2; organism=Vigna unguiculata; type=mRNA; length=1281bp
AAAAGAAGAAGATTATTTGGTTGGTCGGAAACTTGTTACCAAAATACTTG
TGTTATGTGTCGGAGTTGGAATTGCATTGTTCTATTTCACTGTTAGTGGT
AAGGGAGAGTTTGGTACACAAACTAGCACCATGAAGAGCATGGTGACGCC
ATTGATGAGGGTCTCACCCTTTCATCACCGAAATGGCCATAATACCCTTC
CCTTCTTCTCTCCCGCACGCTACCCTTCCTCACCAAACTtctctttctcc
cctctctctctcactctttcCATGGCCGCTTCACCCCAATCTTCCGCTCC
GGCTGCGTCGCGTGGTGATGCTAAAATCGACAAAGATGGTGTATTTCAAT
TGATTCAAGCACATCAGGAAAAAGCTGCTAGACTTCCACCATTAGAGGAA
ATTCGAACTGTCCTTGATCGTAGCGTTCGCGGGATGCTCTCTACATTCTC
CAAGAAGTTCGATGGCTATCCATCAGGGTCTATGGTTGACTTTGCATGTG
ATGCAAATGGATATCCTATATTAGCAGTGAGCGACCTGGCAGTTCATTCC
AAGGACCTAACTGCCAATCCTAAATGTTCATTACTTGTGGCTAGAGATCC
TGAAGATAGGACTGATTTAGTGATTACTATACACGGTGATGCTATCACTG
TACCTGAAAAGGATAAAGAAGCTGTTCGGGCTGCATATTTGGCAAGACAT
CCCAATGCATTTTGGGTTGACTTTGGAGACTTCAAATTCTTGCGCATTGA
ACCAAAAGTTGTACGATTTGTGTCAGGCGTTGCCACAGCTTTGTTAGGAT
CAGGAGAGTTTACTGGAGATGAGTATAAATCTGCAAAAGTTGACCCCATA
GCTCAATTTTCCAAGCCAGTGGCGTCTCATATGAACAAAGATCATGCTGA
CGATAACAAAGTGATTGTGCAGCATTGGACCTCAGTTCCAGTGGACTTTG
CATACCTTTTAGATATGGATAGTCTTGGTTTCAATGTTAAGGCTGGTTAT
CAGGGTGATACTTTCAAGCTTCGTGTTCCTTTCCCTCGACGCGCAGAAGA
TAGAAAGGATGTGAAGACTCTCATTGTTGAGATGCTTCAAGCTGCCGGGC
CAAAAGCTGAATGATGACTCCACAGATCAATGATGAAGAGGTGCTCATCC
AAAATTCATTTAATCCTTCAATTCAATCTGTGCTTCACACTCCTAGATTT
GTCATTTTTTTCAGAGATTAGTTCACCGTGCCTTGCTACTATATATCCCA
ATGCCAGATAAATACATGCATACTTACTGCT back to topprotein sequence of Vigun01g087500.2_Vu_IT97K-499-35_v1.1 >Vigun01g087500.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g087500.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g087500.2_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=328bp
MKSMVTPLMRVSPFHHRNGHNTLPFFSPARYPSSPNFSFSPLSLTLSMAA
SPQSSAPAASRGDAKIDKDGVFQLIQAHQEKAARLPPLEEIRTVLDRSVR
GMLSTFSKKFDGYPSGSMVDFACDANGYPILAVSDLAVHSKDLTANPKCS
LLVARDPEDRTDLVITIHGDAITVPEKDKEAVRAAYLARHPNAFWVDFGD
FKFLRIEPKVVRFVSGVATALLGSGEFTGDEYKSAKVDPIAQFSKPVASH
MNKDHADDNKVIVQHWTSVPVDFAYLLDMDSLGFNVKAGYQGDTFKLRVP
FPRRAEDRKDVKTLIVEMLQAAGPKAE* back to topmRNA from alignment at Vu01:24570493..24574907+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun01g087500.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g087500.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g087500.2; organism=Vigna unguiculata; type=mRNA; length=4415bp; location=Sequence derived from: Vu01:24570493..24574907+ (Vigna unguiculata
AAAAGAAGAAGATTATTTGGTTGGTCGGAAACTTGTTACCAAAATACTTG
TGTTATGTGTCGGAGTTGGAATTGCATTGTTCTATTTCACTGTTAGTGGT
AAGGGAGAGTTTGGTACACAAACTAGCACCATGAAGAGCATGGTGACGCC
ATTGATGAGGGTCTCACCCTTTCATCACCGAAATGGCCATAATACCCTTC
CCTTCTTCTCTCCCGCACGCTACCCTTCCTCACCAAACTTCTCTTTCTCC
CCTCTCTCTCTCACTCTTTCCATGGCCGCTTCACCCCAATCTTCCGCTCC
GGTACCTTTCTATTCTCCTTCTTTCATATTTTTCTTCCACCCAATTCAAC
CATAATTAGCTTGCACGCTTCAAAATTTAAACTTTGCATCGCATGGTTGG
AATTTGGATTTTTTTTTGTTTAATTGGGTCATGTTGTTTCTGAATATCTC
ATTGATATGAGTCTTTGTTCGTTACGTGATGATCACTATGCATGAATAAG
TAATAACAGTGTGTTGTTGATGGTTTAAAAAATCAGGCTGCGTCGCGTGG
TGATGCTAAAATCGACAAAGATGGTGTATTTCAATTGATTCAAGCACATC
AGGTATTTGACATTGGTTCTCGGTTCAATTCAGTTTGTTGCGTGTGAACT
TGGAAGTGGTTGAAATAGAATGAATATTTATGGGTGTGATTGGTTGTGTG
TTAATTTATTGGGGTTGTTTTGGTATGATAGGAAAAAGCTGCTAGACTTC
CACCATTAGAGGAAATTCGAACTGTCCTTGATCGTAGCGTTCGCGGGATG
CTCTCTACATTCTCCAAGGTTTATCTATTTTCCTTAAGAAATCTGATGGT
AAAAAAAGATAGCTTTAAATGGAAAAATGCTGAAAGTGTCTTTGAACATT
ACCAATTCTGAAAGTTTTTTAAATGGAGAGAGGTTCGTTTTGCCTTTCTG
GAAGTTTAGTTCTGCCCTTTCTTTCGTGGTCAATTATTCAGTTATTATTG
GTATTAAAAGACTAAGGAGTCTACAAACTTTCACACCCAATTAACATGAA
CAGAATTCAAGTTTGGCAGAGAAATGAAATTGAAATCTGGCTGCCTTCTG
AATTTTGTCTTCTCATATATTTGACATTAAATTATTTCGTGTTTATTAGC
AAATGACTTAATCTTCTGATTTTTAACAAGCAGAAGTTCGATGGCTATCC
ATCAGGGTCTATGGTTGACTTTGCATGTGATGCAAATGGATATCCTATAT
TAGCAGTGAGCGACCTGGCAGTTCATTCCAAGGTTTTTCCTTTTTCTGTT
CTTCCTCCGAAATTTCCCTGTTGTTGGAAAATGACAAATATAAATAATTT
AAAGATTGAAACTGCTTCTTGTTGAGAACTGACTTCAAAATTTGATGTTG
AATGCGGTTTTTTGTGAACTAGTTTGTATATAGCGATTCAGTACATTGTG
CTGAATTTGGCTTGTACAATACCACTAGTTCAATTTGAAATCCTATTTTC
CATGTCCTCAACCAACACGTGGTCTTGTTAACAATTATTACCCATAAGAG
CATCTTTTGCAACCAACACCTACCCAGTTAAAAGCTTGCTTCCATTGCTA
AAGACTGCTTTTATGCAGGACCTAACTGCCAATCCTAAATGTTCATTACT
TGTGGCTAGAGATCCTGAAGATAGGACTGATTTAGTGATTACTATACACG
GTGATGCTATCACTGTAAGTTATGATCTTCTGTTTATTTCCCTGTTATAC
ATGATTTCTGTGTTTTCGTTTCCATTCACTGTTGCACGTTGGATTATGTA
ATTATTATACTACAATAACGTTATATGAAGGCTTTGCAGTTTAATTGCAT
TGCGGGTTGTTTTTTCAGGTACCTGAAAAGGATAAAGAAGCTGTTCGGGC
TGCATATTTGGCAAGACATCCCAATGCATTTTGGGTAAATTTGTTCACTG
TCCCCTCTGTAACTTGTATCTTTACCTTCTTCTTATCATTTTTTAATTAT
TAACTCTAAAAGCTTCTGATATAACTTGTACCTTTTCCTTATTGTTTTTG
AATTAACAATTCTAAAACATTCCAATATTGAAGGTTGACTTTGGAGACTT
CAAATTCTTGCGCATTGAACCAAAAGTTGTACGATTTGTGTCAGGCGTTG
CCACAGCTTTGTTAGGATCAGGAGGTTTGTTAACCATATCATTCTTGTTG
GTTTCATTTGCTGTTAATGCTATATTGCAAGGTTCCTTTAATAATGTTTG
GATGAATGAGTTTGGAGGGGGAAAGGAAGGGCGAATTAAGTTTTCATATA
AGTAAACTTTTAACTATTTAATTTTCTTAAAACTAAAGGATATAGTGGTA
GATAATTGTGTAAACTGCTTGTCATCTTAGTAAAGTTGAAAGCAGTTTAT
TAGAATAATACATAATAGTTAGTTGTCAGAATAATGGAGGTTAATTATAT
TAGATATGCTAGGCAGTTAAAGTGTTATTTGAAGGGAGTTAGTTTATGCT
GGAGGATAGGGTAGAAGAGGGAATGGTTGAATGATTATTCATTGTTGTTG
AAGCCTTGAAGGTAAGAGTAGTTGGCAGGCAATAGGATGAGCTTTAATTG
TTAGATTTGTGGGTGTTTGGAAATCATGATGTTGAGAAAGCTCTTCTAAC
ACGATCTTTAAAGTGAGTAATATTCACTGTTTAATTTAAATCGTTTTTGT
GATCTTACCCTACTGAGACTAAGAGTGGTTTCATCCTTATTTTCTCACTT
CAGAGACTTTTTCTCGGATGAGTTTTTTTTCTCTCTCTTGATGATGATGC
ATTCTTTGCATCATATGGGATGACACAAACCATGTCTTTCTAGTAGGTTT
CTTCAAATGGAAAGTGTACTGGTTTGCATTTTGTGGTAAATTTTGTTTCT
TTAATATCTACATAACTGTTGTTGATCATAATGCCAATGGCATCAAAATT
GAGTGCTTTCTCTGGATTATAATTGAATTTCACGCGTTCTCTATATAATC
CTTATGTCATGCTTTTTTTATTTGATTTTCAGAGTTTACTGGAGATGAGT
ATAAATCTGCAAAAGTTGACCCCATAGCTCAATTTTCCAAGCCAGTGGCG
GTACTGATCTCTGACTGATCATCATGTTACACATCTGCAATGACTTTCAG
AAGTCAGTCATTTTTGTTCTAATATAAGTTGTGTTTTTAACAGTCTCATA
TGAACAAAGATCATGCTGACGATAACAAAGTGATTGTGCAGCATTGGACC
TCAGTTCCAGTATGACATCTTGACCATTCTACAGTATACAATGTAGATAA
TAAAAGAGGCTCTTTCGTTCAATTGCTAATATAGTGTAAAATTACTTTGT
TAAACCAGTGTGCAATATGATATGTTAGTGTGTGATGTGAGAGTAGTATT
TCATGGGGTTCCATATGGTCAGGCATAAGAATCTATGGTCTATAACATAA
CACAATATGTTCTGTAAACAATACATGTTCAGCCTTAATTTAACTGAATT
GATCATCATCAACTGCAGGTGGACTTTGCATACCTTTTAGATATGGATAG
TCTTGGTTTCAATGTTAAGGTACTGCCTTCATTAGTTATTCGTTGACATT
ATTTACCTTTCCATTAGGAGCTATTTATAAAATAATTTAAAATTCTCTTA
TAAATTTGGGAAATGAAGTCTTCTATAAGTTGGTTCTTTCAATAATAATC
TTTTGTCACCAACTGTGTTATAATTTTGTTCGAGTTTGAATCTGTACCTT
ATTTATTGAAAGAATCAACTTTTTTGCAGGCTGGTTATCAGGGTGATACT
TTCAAGCTTCGTGTTCCTTTCCCTCGACGCGCAGAAGATAGAAAGTGAGA
CATGATATTTATATGAACTCATCTTCTGCATAAAATGACATGTGACATGT
CTGCCTTCATGAGATCAAATATGCTCATCTGTTTTCTAGTTTACTTATGA
AATTCTATGTTCATCTGAACTTTGATGAAAATGGGAGCATTACTGTGTTA
GCCTAGGCTTTACTGTTGTTGAGTTAATCAATTAACTTGCTGCTTCCAAT
CAGACAAATTCTACTTTTCTAACTAATATCATCCTTTTGGGATGGTATTA
ATCATGTCGATATGGGTTTCTGATAAGAAATCAGGAAATAAAAAAACCTT
TCTGCAGAGAAATGATTACTATATTGTTTTTTTCTTTTAGGGATGTGAAG
ACTCTCATTGTTGAGATGCTTCAAGCTGCCGGGCCAAAAGCTGAATGATG
ACTCCACAGATCAATGATGAAGAGGTGCTCATCCAAAATTCATTTAATCC
TTCAATTCAATCTGTGCTTCACACTCCTAGATTTGTCATTTTTTTCAGAG
ATTAGTTCACCGTGCCTTGCTACTATATATCCCAATGCCAGATAAATACA
TGCATACTTACTGCT back to topCoding sequence (CDS) from alignment at Vu01:24570493..24574907+ >Vigun01g087500.2_Vu_IT97K-499-35_v1.1 ID=Vigun01g087500.2_Vu_IT97K-499-35_v1.1; Name=Vigun01g087500.2; organism=Vigna unguiculata; type=CDS; length=984bp; location=Sequence derived from: Vu01:24570493..24574907+ (Vigna unguiculata
ATGAAGAGCATGGTGACGCCATTGATGAGGGTCTCACCCTTTCATCACCG
AAATGGCCATAATACCCTTCCCTTCTTCTCTCCCGCACGCTACCCTTCCT
CACCAAACTTCTCTTTCTCCCCTCTCTCTCTCACTCTTTCCATGGCCGCT
TCACCCCAATCTTCCGCTCCGGCTGCGTCGCGTGGTGATGCTAAAATCGA
CAAAGATGGTGTATTTCAATTGATTCAAGCACATCAGGAAAAAGCTGCTA
GACTTCCACCATTAGAGGAAATTCGAACTGTCCTTGATCGTAGCGTTCGC
GGGATGCTCTCTACATTCTCCAAGAAGTTCGATGGCTATCCATCAGGGTC
TATGGTTGACTTTGCATGTGATGCAAATGGATATCCTATATTAGCAGTGA
GCGACCTGGCAGTTCATTCCAAGGACCTAACTGCCAATCCTAAATGTTCA
TTACTTGTGGCTAGAGATCCTGAAGATAGGACTGATTTAGTGATTACTAT
ACACGGTGATGCTATCACTGTACCTGAAAAGGATAAAGAAGCTGTTCGGG
CTGCATATTTGGCAAGACATCCCAATGCATTTTGGGTTGACTTTGGAGAC
TTCAAATTCTTGCGCATTGAACCAAAAGTTGTACGATTTGTGTCAGGCGT
TGCCACAGCTTTGTTAGGATCAGGAGAGTTTACTGGAGATGAGTATAAAT
CTGCAAAAGTTGACCCCATAGCTCAATTTTCCAAGCCAGTGGCGTCTCAT
ATGAACAAAGATCATGCTGACGATAACAAAGTGATTGTGCAGCATTGGAC
CTCAGTTCCAGTGGACTTTGCATACCTTTTAGATATGGATAGTCTTGGTT
TCAATGTTAAGGCTGGTTATCAGGGTGATACTTTCAAGCTTCGTGTTCCT
TTCCCTCGACGCGCAGAAGATAGAAAGGATGTGAAGACTCTCATTGTTGA
GATGCTTCAAGCTGCCGGGCCAAAAGCTGAATGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0048037 | obsolete cofactor binding |
|
