Transcript Overview
Name | Vigun01g093300.1 |
Unique Name | Vigun01g093300.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1189 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g093300.1_Vu_IT97K-499-35_v1.1 | Vigun01g093300.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
Vigun01g093300.1 | Vigun01g093300.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g093300.1.v1.1.five_prime_UTR.1 | Vigun01g093300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g093300.1.v1.1.CDS.1 | Vigun01g093300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g093300.1.v1.1.CDS.2 | Vigun01g093300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun01g093300.1.v1.1.CDS.3 | Vigun01g093300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun01g093300.1.v1.1.three_prime_UTR.1 | Vigun01g093300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 52..72 |
None | No IPR available | CDD | cd09028 | ArfGap_ArfGap3 | coord: 104..156 e-value: 0.00609825 score: 33.1159 |
IPR036410 | Heat shock protein DnaJ, cysteine-rich domain superfamily | SUPERFAMILY | 57938 | DnaJ/Hsp40 cysteine-rich domain | coord: 106..168 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g093300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g093300.1; organism=Vigna unguiculata; type=mRNA; length=1189bp CAATTTACTTTCTAACTCTCTTCTTCTTCTTCCTCCTAAAGATTGAAGTG GAGATGGAGAAAGGTGTAATTAGAGATGTAATATTTTAGTCTTTTTCTTC TTGCTTGTAATATGGGGATACAGTTAGTAATTGTTGAAGTGCTGGAAGAA AACTCCTTCAATTTTCTTAACGACTGGGCTCGAAGCCCGTTATTTGTAAA ACAAACGGGCCTCACTAACTCGGTGATCTGAATCCGAATTCAAGCTCGGA CATAGAATTCGGATATTCGACGACCCATGGACCCGCATCGTGAACTACGA GAGTCAGTTGGAGAAACAAGCGATTTGTACGATGAAGTGTGTTGCTTGAA CCATCTGAGTTTTGCATGTTCATTGGGCACCGATGGATTCAGCTTCTATG CAAGTAGCAACCTCAAAATTTGTTCTTTGCCCCAATGCTTCAGCGGCTAA GGTTGCAGGTTCCAAGAAGATTGCCACCGTCAATTTCAGGTCCAAATTCA AAGGATGTGAAACCAAAATCCATGTCGTTTCCTCAAATGGCTCTGTCTCT AGCTCCTCTTCGCGTCGGTCTGTATCAAGTTTGAAAGCAGATGATAACAA ACGCAGAAGTAATCTTGAATCTCTGTTTTGTTATGATAAAGCCATTCCAG AAGAAATAATTGAGAAGCCTGTTGGGCTATCTTTGGAAGAAAAATCTATT GGTAACAATTCCAGATGCACTGATTGCGAGGCCAAAGGTGCTGTGCTTTG TGTCACTTGTGCTGGTTCTGGTCTATACGTTGATTCCATATTGGAAAGCC AGGGCATAATTGTTAAAGTTCGTTGCTTAGGCTGTGGGGGAACAGGCAAT ATAATGTGTGCAGAATGTGGCGGACGAGGTCATCTGGGACCTAAATGATC AAAGTCTTCACGTTTTTGAATTTTGTTGTACAACCAATATGTAGTCTTTT TGGCTGATATTGCATGTAACCATTTTATTTTTATTGTTTTGTAAATCAAG GAGTCGTCATGCCTGAAAAAAAAATAAGATATTTACAAAATTCTCTGCTA TTTCTAAAGCATGAGCTTGTAATCAGATCAGATGGCTGTCATATTTATTC TTAATTATGTGATTCCTCGAAGTACTTGTAATAATACTTTTACATGAAAG TTACAGACAGTTGATTTATTTCTTTAAGGAAAATTGTGT back to topprotein sequence of Vigun01g093300.1_Vu_IT97K-499-35_v1.1 >Vigun01g093300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=172bp MDSASMQVATSKFVLCPNASAAKVAGSKKIATVNFRSKFKGCETKIHVVS SNGSVSSSSSRRSVSSLKADDNKRRSNLESLFCYDKAIPEEIIEKPVGLS LEEKSIGNNSRCTDCEAKGAVLCVTCAGSGLYVDSILESQGIIVKVRCLG CGGTGNIMCAECGGRGHLGPK* back to topmRNA from alignment at Vu01:25595386..25599504+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun01g093300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g093300.1; organism=Vigna unguiculata; type=mRNA; length=4119bp; location=Sequence derived from: Vu01:25595386..25599504+ (Vigna unguiculata CAATTTACTTTCTAACTCTCTTCTTCTTCTTCCTCCTAAAGATTGAAGTG
GAGATGGAGAAAGGTGTAATTAGAGATGTAATATTTTAGTCTTTTTCTTC
TTGCTTGTAATATGGGGATACAGTTAGTAATTGTTGAAGTGCTGGAAGAA
AACTCCTTCAATTTTCTTAACGACTGGGCTCGAAGCCCGTTATTTGTAAA
ACAAACGGGCCTCACTAACTCGGTGATCTGAATCCGAATTCAAGCTCGGA
CATAGAATTCGGATATTCGACGACCCATGGACCCGCATCGTGAACTACGA
GAGTCAGTTGGAGAAACAAGCGATTTGTACGATGAAGTGTGTTGCTTGAA
CCATCTGAGTTTTGCATGTTCATTGGGCACCGATGGATTCAGCTTCTATG
CAAGTAGCAACCTCAAAATTTGTTCTTTGCCCCAATGCTTCAGCGGCTAA
GGTTGCAGGTTCCAAGAAGATTGCCACCGTCAATTTCAGGTCCAAATTCA
AAGGATGTGAAACCAAAATCCATGTCGTTTCCTCAAATGGCTCTGTCTCT
AGCTCCTCTTCGCGTCGGGTCGGTCATCTTTTTTTTTTTTTATTCTCAAG
CAATTTTTTGTTGATCGAGTGGTAATGAATTTCCTTTCAGTTAGTTATGT
TTTACATGAATTTTGTTTGAGAGTTGTTTACAAAACTTGACAATGATGTT
AACTTTCTTTCTGTATCCTTAAATCCAGTGATACTTTGTAATGATAAAAT
GTTTATTGAAAAAAATATTGATGCATGAAAGACATGAATGGTTTTTTGAT
TGACGATGACTTTAGGATAGAACAGATGTTAGTTTTTTTTTTTTCTTTAT
TGGTTTGGTTTTAAGATCTTAATGACTGGGAATAATGGCCGTAGTATTGT
TATTATATGCATTGGTTAACGGTTATCCCTTGCTACATTTCCCTTAGGTA
GAAAATTTTATTTTTGTGTCTTAGTGTTACTAAGCAAAAGACTTTCTTCA
CATTTGGTTGTGTGCATTTATTTATTTTTTAAAATTGCTTATTCCTTTGC
ACTTTTTTATTTATTTCTCGCTTTTGAAAGTTTTTAGTATTTTCCTTTTT
GTATGTTGCCGAATGCATGCTGATTAAATTACTAGTTAGTTAGTTGTGTC
ATGTCATGTCATGTCTTGATCTATTTCTACTTTGAGAACAATTGTTTTCC
TTCTCTGTTGTAGTTGATATTTTCAATCACTTTCTGAGTTTGCGTGTGAT
GTGATTCATAATGTTGCTTTAATTTTGACCAAAAAAGGGAACAAAAACAA
GTGTTGCTTCAGTAACCTAAGATCAGAACACTTTCTTGGAGTTTTCCGTA
TTTGAAATTCAGATATACACGGTCCTCATCATTGACAGCACCTTGATCAG
GTCGTTTCATTATGTTGAGCTGCTGGCATTGCATATTATGGAGTCAATTT
AGAGAAAATCTCTATGAGTACATACAGGAGGAAAAATAAAATGACTTTAA
GGTAAAAGTAAAATGAATCAAGATCTTAAGTTGAAATCAACTTATCACCT
TAACTTGTAGAAAAGTTAAGGAAGCTTTTGAAAAAATGAGGTTTATAAGT
TGATATTAGAGAAATTTGATTCACTTTTCCTCATTGATTCTTATTGGGTT
TATCAGAAAGTTTATCCAAATAGGTGTTTAGTGCACAATTTGCACATTCG
AAGGATAGATATGTAAGTGGTTCAAACATGATTAGAAGTTGATTTTTATT
CTGTCAGAGCTCAGACAATATCTAATATTCTCTGCAGTAACATTGTAAGG
ATTCAACAATTACACCCTCAAACACAATTTCGTGTGCTAGTTTGGGATTG
CTGAAATTGATCATGGAATTGTTGTGGTGGAAGATCCCATTATGGTGATC
GAATCAACCAATTCTGAAAAATGATTTCCAAGTCCTTGCCCACTTGAAAC
CTTAAGACCTTGAGCCCTACAATTTTTATGTCATTCATTCAACCCTTCCC
TATTACCTTTTCACACTACTTGAGCTTTGATTTGTGGTTGCTACCCGCCG
TAACTTTGGGTAATGGTCAAGAAAGGGAGGATGGGTGATGGTTTGTCCTT
CCGTGCCTTTGTTTCTGCTTTGGTTTTTTGTGCTTCTCTTCAGGTTTTGT
GTTTTGCTGCTTGCTTGTTTCTAATTTGCTTTGTATTTTTATTCAGTGGT
CCAATGGTTTTTGGGCTTTGTTTTGTGTCTTTGTTTTGTGGTGATATCAT
CCAATGGTGTTATCTATTAAAAATTTGTCATATATACTATAAATTGTACT
TGAGTATTTGCCTTGCACATTATATTAAGTGGCATATTACAATCTCACAT
ATTTGTTTGACTCACTCTTCCAATCTTGGGTAGGATGTCGATCTTGACAA
CATTGTATTTGTCATAGATGGTAAGAAAGTTTAAGGGAATGATCTATCCA
GTTTGCATATTTAGGTAGCCTTAAATAATTTAGATACCACTTGGCAATAA
ATTGTATATGTAATAAGTTGAGTAATTTGGAGATTTATTGGATTGAAGCT
TGGAATTGAGTGTGTTGCATATTACTGATTAGTTGGTGATTGTTCAATTT
TTTTATAAACGGCCCCCTAATATTTGGTTTTACCTTGTAGACAACTGTAG
TATTTTAATTGTTTTGGAATTATTTTCTGTGGTTCTATCAATGTTTTTAC
GTTGTTATAGGGGAAGGGAATATCTTTTTGTAAAATACTTTGTTCCTTTT
GTTTAGTAGAATCTGTGCATCCTTCTCTACTGACAAACTGGACTTATAGT
TTGGTGTTGAATGGATGTCTCAGCTAACTATTTCCTTCCTTATATTTCAG
TCTGTATCAAGTTTGAAAGCAGATGATAACAAACGCAGAAGTAATCTTGA
ATCTCTGTTTTGTTATGATAAAGCCATTCCAGAAGAAATAATTGAGAAGC
CTGTTGGGCTATCTTTGGAAGAAAAATCTATTGGTAACAATTCCAGATGC
ACTGATTGCGAGGCCAAAGGTGCTGTGCTTTGTGTCACTTGTGCTGGTTC
TGGTCTATACGTTGATTCCATATTGGAAAGCCAGGGCATAATTGTTAAAG
TTCGTTGCTTAGGTATATTCCTCTTCCTGTTCTAGCAACCTTCTTTAGTT
CGTGCTTGCTGCAGGACCTCCTACACCTCACTCACGTTTAAACTGTATTT
GCTGCACTTTTGTTATGTAGTATTGTTACCTAACATTTTTGTGTTTGTCA
CTTATGCGTCGAAGCTGTTCTCTGATGGAACTTCATTCTTTTTTTGGTTG
GACAATTTTAGCTTAACCCTTTTTATGGCTTGCCTAGATGAACAACTGGA
GCTTGGTCTTCTATGAGGACTTTGAATGAAACAAGTTTGCAAATTTTTAG
ATCTTTTTGGCATGTATAGAATTAGTATAGCTCAAACTAAAACGAGATTT
TTTTGATAACTCAAATTTGGTGTAACACTACTAATTGCTAGATTAAACGG
GGTGCATTTGCTCAAATCCCAATCATAATAATCTAAATGTAAGATGCATA
GCATCTCTATTGGTGCAAACATTTTCTGCTGCAGTGGGCTTTCTGCACCA
CGTGCAACTATGATCCTACACTGCAGATTGGGGAATCATGTTCTTATTAT
TTTACATGAAAAAGTGTATTTTCTTATGCAGTTGTATTACTGTTTTCTAG
TGTTGATGATTAGGATCTTGTTTTTTAATATGTTTTTATTTTACAACTAT
GACCATGCAGGCTGTGGGGGAACAGGCAATATAATGTGTGCAGAATGTGG
CGGACGAGGTCATCTGGGACCTAAATGATCAAAGTCTTCACGTTTTTGAA
TTTTGTTGTACAACCAATATGTAGTCTTTTTGGCTGATATTGCATGTAAC
CATTTTATTTTTATTGTTTTGTAAATCAAGGAGTCGTCATGCCTGAAAAA
AAAATAAGATATTTACAAAATTCTCTGCTATTTCTAAAGCATGAGCTTGT
AATCAGATCAGATGGCTGTCATATTTATTCTTAATTATGTGATTCCTCGA
AGTACTTGTAATAATACTTTTACATGAAAGTTACAGACAGTTGATTTATT
TCTTTAAGGAAAATTGTGT back to topCoding sequence (CDS) from alignment at Vu01:25595386..25599504+ >Vigun01g093300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g093300.1; organism=Vigna unguiculata; type=CDS; length=516bp; location=Sequence derived from: Vu01:25595386..25599504+ (Vigna unguiculata ATGGATTCAGCTTCTATGCAAGTAGCAACCTCAAAATTTGTTCTTTGCCC CAATGCTTCAGCGGCTAAGGTTGCAGGTTCCAAGAAGATTGCCACCGTCA ATTTCAGGTCCAAATTCAAAGGATGTGAAACCAAAATCCATGTCGTTTCC TCAAATGGCTCTGTCTCTAGCTCCTCTTCGCGTCGGTCTGTATCAAGTTT GAAAGCAGATGATAACAAACGCAGAAGTAATCTTGAATCTCTGTTTTGTT ATGATAAAGCCATTCCAGAAGAAATAATTGAGAAGCCTGTTGGGCTATCT TTGGAAGAAAAATCTATTGGTAACAATTCCAGATGCACTGATTGCGAGGC CAAAGGTGCTGTGCTTTGTGTCACTTGTGCTGGTTCTGGTCTATACGTTG ATTCCATATTGGAAAGCCAGGGCATAATTGTTAAAGTTCGTTGCTTAGGC TGTGGGGGAACAGGCAATATAATGTGTGCAGAATGTGGCGGACGAGGTCA TCTGGGACCTAAATGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR036410 | HSP_DnaJ_Cys-rich_dom_sf |
|