Vigun01g093300.1

Transcript Overview
NameVigun01g093300.1
Unique NameVigun01g093300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1189
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:25595386..25599504 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
psvuL004Pisum sativum Cameor genome v1aPisum sativum
psvuL193Pisum sativum Cameor genome v1aPisum sativum
crvuL127Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL228Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL011Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL094Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL163Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0134Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0230Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuL1259Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0078Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0653Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0873Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1082Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL404Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR003Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR020Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL119Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL112Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL581Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL538Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL001Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL015Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL439Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR000Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL081Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL142Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL337Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL082Cicer arietinum
carvuL159Cicer arietinum
ccavuL505Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL557Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR036Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR038Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR048Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL307Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL324Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL007Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.04G154700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_08191Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va03G060400.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014635692.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Tiffany.R1.5g077120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_018481Cajanus cajan Asha genome v1.0Cajanus cajan
XM_058886193.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr01.925Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_05111.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cc_v2.0_15457.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cr_07428.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
PvulFLAVERTChr01.1000742Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Hedin2.R1.5g091680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan03g198700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.001G105600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004493163.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat03G0289000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg33465.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vum_04G01750.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigan.04G247200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat3g086560.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g093300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g093300Vigun01g093300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g093300.1_Vu_IT97K-499-35_v1.1Vigun01g093300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide
Vigun01g093300.1Vigun01g093300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g093300.1.v1.1.five_prime_UTR.1Vigun01g093300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g093300.1.v1.1.CDS.1Vigun01g093300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun01g093300.1.v1.1.CDS.2Vigun01g093300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun01g093300.1.v1.1.CDS.3Vigun01g093300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g093300.1.v1.1.three_prime_UTR.1Vigun01g093300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun01g093300.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..72
NoneNo IPR availableCDDcd09028ArfGap_ArfGap3coord: 104..156
e-value: 0.00609825
score: 33.1159
IPR036410Heat shock protein DnaJ, cysteine-rich domain superfamilySUPERFAMILY57938DnaJ/Hsp40 cysteine-rich domaincoord: 106..168

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g093300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g093300.1; organism=Vigna unguiculata; type=mRNA; length=1189bp
CAATTTACTTTCTAACTCTCTTCTTCTTCTTCCTCCTAAAGATTGAAGTG
GAGATGGAGAAAGGTGTAATTAGAGATGTAATATTTTAGTCTTTTTCTTC
TTGCTTGTAATATGGGGATACAGTTAGTAATTGTTGAAGTGCTGGAAGAA
AACTCCTTCAATTTTCTTAACGACTGGGCTCGAAGCCCGTTATTTGTAAA
ACAAACGGGCCTCACTAACTCGGTGATCTGAATCCGAATTCAAGCTCGGA
CATAGAATTCGGATATTCGACGACCCATGGACCCGCATCGTGAACTACGA
GAGTCAGTTGGAGAAACAAGCGATTTGTACGATGAAGTGTGTTGCTTGAA
CCATCTGAGTTTTGCATGTTCATTGGGCACCGATGGATTCAGCTTCTATG
CAAGTAGCAACCTCAAAATTTGTTCTTTGCCCCAATGCTTCAGCGGCTAA
GGTTGCAGGTTCCAAGAAGATTGCCACCGTCAATTTCAGGTCCAAATTCA
AAGGATGTGAAACCAAAATCCATGTCGTTTCCTCAAATGGCTCTGTCTCT
AGCTCCTCTTCGCGTCGGTCTGTATCAAGTTTGAAAGCAGATGATAACAA
ACGCAGAAGTAATCTTGAATCTCTGTTTTGTTATGATAAAGCCATTCCAG
AAGAAATAATTGAGAAGCCTGTTGGGCTATCTTTGGAAGAAAAATCTATT
GGTAACAATTCCAGATGCACTGATTGCGAGGCCAAAGGTGCTGTGCTTTG
TGTCACTTGTGCTGGTTCTGGTCTATACGTTGATTCCATATTGGAAAGCC
AGGGCATAATTGTTAAAGTTCGTTGCTTAGGCTGTGGGGGAACAGGCAAT
ATAATGTGTGCAGAATGTGGCGGACGAGGTCATCTGGGACCTAAATGATC
AAAGTCTTCACGTTTTTGAATTTTGTTGTACAACCAATATGTAGTCTTTT
TGGCTGATATTGCATGTAACCATTTTATTTTTATTGTTTTGTAAATCAAG
GAGTCGTCATGCCTGAAAAAAAAATAAGATATTTACAAAATTCTCTGCTA
TTTCTAAAGCATGAGCTTGTAATCAGATCAGATGGCTGTCATATTTATTC
TTAATTATGTGATTCCTCGAAGTACTTGTAATAATACTTTTACATGAAAG
TTACAGACAGTTGATTTATTTCTTTAAGGAAAATTGTGT
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protein sequence of Vigun01g093300.1_Vu_IT97K-499-35_v1.1

>Vigun01g093300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=172bp
MDSASMQVATSKFVLCPNASAAKVAGSKKIATVNFRSKFKGCETKIHVVS
SNGSVSSSSSRRSVSSLKADDNKRRSNLESLFCYDKAIPEEIIEKPVGLS
LEEKSIGNNSRCTDCEAKGAVLCVTCAGSGLYVDSILESQGIIVKVRCLG
CGGTGNIMCAECGGRGHLGPK*
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mRNA from alignment at Vu01:25595386..25599504+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g093300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g093300.1; organism=Vigna unguiculata; type=mRNA; length=4119bp; location=Sequence derived from: Vu01:25595386..25599504+ (Vigna unguiculata
CAATTTACTTTCTAACTCTCTTCTTCTTCTTCCTCCTAAAGATTGAAGTG
GAGATGGAGAAAGGTGTAATTAGAGATGTAATATTTTAGTCTTTTTCTTC
TTGCTTGTAATATGGGGATACAGTTAGTAATTGTTGAAGTGCTGGAAGAA
AACTCCTTCAATTTTCTTAACGACTGGGCTCGAAGCCCGTTATTTGTAAA
ACAAACGGGCCTCACTAACTCGGTGATCTGAATCCGAATTCAAGCTCGGA
CATAGAATTCGGATATTCGACGACCCATGGACCCGCATCGTGAACTACGA
GAGTCAGTTGGAGAAACAAGCGATTTGTACGATGAAGTGTGTTGCTTGAA
CCATCTGAGTTTTGCATGTTCATTGGGCACCGATGGATTCAGCTTCTATG
CAAGTAGCAACCTCAAAATTTGTTCTTTGCCCCAATGCTTCAGCGGCTAA
GGTTGCAGGTTCCAAGAAGATTGCCACCGTCAATTTCAGGTCCAAATTCA
AAGGATGTGAAACCAAAATCCATGTCGTTTCCTCAAATGGCTCTGTCTCT
AGCTCCTCTTCGCGTCGGGTCGGTCATCTTTTTTTTTTTTTATTCTCAAG
CAATTTTTTGTTGATCGAGTGGTAATGAATTTCCTTTCAGTTAGTTATGT
TTTACATGAATTTTGTTTGAGAGTTGTTTACAAAACTTGACAATGATGTT
AACTTTCTTTCTGTATCCTTAAATCCAGTGATACTTTGTAATGATAAAAT
GTTTATTGAAAAAAATATTGATGCATGAAAGACATGAATGGTTTTTTGAT
TGACGATGACTTTAGGATAGAACAGATGTTAGTTTTTTTTTTTTCTTTAT
TGGTTTGGTTTTAAGATCTTAATGACTGGGAATAATGGCCGTAGTATTGT
TATTATATGCATTGGTTAACGGTTATCCCTTGCTACATTTCCCTTAGGTA
GAAAATTTTATTTTTGTGTCTTAGTGTTACTAAGCAAAAGACTTTCTTCA
CATTTGGTTGTGTGCATTTATTTATTTTTTAAAATTGCTTATTCCTTTGC
ACTTTTTTATTTATTTCTCGCTTTTGAAAGTTTTTAGTATTTTCCTTTTT
GTATGTTGCCGAATGCATGCTGATTAAATTACTAGTTAGTTAGTTGTGTC
ATGTCATGTCATGTCTTGATCTATTTCTACTTTGAGAACAATTGTTTTCC
TTCTCTGTTGTAGTTGATATTTTCAATCACTTTCTGAGTTTGCGTGTGAT
GTGATTCATAATGTTGCTTTAATTTTGACCAAAAAAGGGAACAAAAACAA
GTGTTGCTTCAGTAACCTAAGATCAGAACACTTTCTTGGAGTTTTCCGTA
TTTGAAATTCAGATATACACGGTCCTCATCATTGACAGCACCTTGATCAG
GTCGTTTCATTATGTTGAGCTGCTGGCATTGCATATTATGGAGTCAATTT
AGAGAAAATCTCTATGAGTACATACAGGAGGAAAAATAAAATGACTTTAA
GGTAAAAGTAAAATGAATCAAGATCTTAAGTTGAAATCAACTTATCACCT
TAACTTGTAGAAAAGTTAAGGAAGCTTTTGAAAAAATGAGGTTTATAAGT
TGATATTAGAGAAATTTGATTCACTTTTCCTCATTGATTCTTATTGGGTT
TATCAGAAAGTTTATCCAAATAGGTGTTTAGTGCACAATTTGCACATTCG
AAGGATAGATATGTAAGTGGTTCAAACATGATTAGAAGTTGATTTTTATT
CTGTCAGAGCTCAGACAATATCTAATATTCTCTGCAGTAACATTGTAAGG
ATTCAACAATTACACCCTCAAACACAATTTCGTGTGCTAGTTTGGGATTG
CTGAAATTGATCATGGAATTGTTGTGGTGGAAGATCCCATTATGGTGATC
GAATCAACCAATTCTGAAAAATGATTTCCAAGTCCTTGCCCACTTGAAAC
CTTAAGACCTTGAGCCCTACAATTTTTATGTCATTCATTCAACCCTTCCC
TATTACCTTTTCACACTACTTGAGCTTTGATTTGTGGTTGCTACCCGCCG
TAACTTTGGGTAATGGTCAAGAAAGGGAGGATGGGTGATGGTTTGTCCTT
CCGTGCCTTTGTTTCTGCTTTGGTTTTTTGTGCTTCTCTTCAGGTTTTGT
GTTTTGCTGCTTGCTTGTTTCTAATTTGCTTTGTATTTTTATTCAGTGGT
CCAATGGTTTTTGGGCTTTGTTTTGTGTCTTTGTTTTGTGGTGATATCAT
CCAATGGTGTTATCTATTAAAAATTTGTCATATATACTATAAATTGTACT
TGAGTATTTGCCTTGCACATTATATTAAGTGGCATATTACAATCTCACAT
ATTTGTTTGACTCACTCTTCCAATCTTGGGTAGGATGTCGATCTTGACAA
CATTGTATTTGTCATAGATGGTAAGAAAGTTTAAGGGAATGATCTATCCA
GTTTGCATATTTAGGTAGCCTTAAATAATTTAGATACCACTTGGCAATAA
ATTGTATATGTAATAAGTTGAGTAATTTGGAGATTTATTGGATTGAAGCT
TGGAATTGAGTGTGTTGCATATTACTGATTAGTTGGTGATTGTTCAATTT
TTTTATAAACGGCCCCCTAATATTTGGTTTTACCTTGTAGACAACTGTAG
TATTTTAATTGTTTTGGAATTATTTTCTGTGGTTCTATCAATGTTTTTAC
GTTGTTATAGGGGAAGGGAATATCTTTTTGTAAAATACTTTGTTCCTTTT
GTTTAGTAGAATCTGTGCATCCTTCTCTACTGACAAACTGGACTTATAGT
TTGGTGTTGAATGGATGTCTCAGCTAACTATTTCCTTCCTTATATTTCAG
TCTGTATCAAGTTTGAAAGCAGATGATAACAAACGCAGAAGTAATCTTGA
ATCTCTGTTTTGTTATGATAAAGCCATTCCAGAAGAAATAATTGAGAAGC
CTGTTGGGCTATCTTTGGAAGAAAAATCTATTGGTAACAATTCCAGATGC
ACTGATTGCGAGGCCAAAGGTGCTGTGCTTTGTGTCACTTGTGCTGGTTC
TGGTCTATACGTTGATTCCATATTGGAAAGCCAGGGCATAATTGTTAAAG
TTCGTTGCTTAGGTATATTCCTCTTCCTGTTCTAGCAACCTTCTTTAGTT
CGTGCTTGCTGCAGGACCTCCTACACCTCACTCACGTTTAAACTGTATTT
GCTGCACTTTTGTTATGTAGTATTGTTACCTAACATTTTTGTGTTTGTCA
CTTATGCGTCGAAGCTGTTCTCTGATGGAACTTCATTCTTTTTTTGGTTG
GACAATTTTAGCTTAACCCTTTTTATGGCTTGCCTAGATGAACAACTGGA
GCTTGGTCTTCTATGAGGACTTTGAATGAAACAAGTTTGCAAATTTTTAG
ATCTTTTTGGCATGTATAGAATTAGTATAGCTCAAACTAAAACGAGATTT
TTTTGATAACTCAAATTTGGTGTAACACTACTAATTGCTAGATTAAACGG
GGTGCATTTGCTCAAATCCCAATCATAATAATCTAAATGTAAGATGCATA
GCATCTCTATTGGTGCAAACATTTTCTGCTGCAGTGGGCTTTCTGCACCA
CGTGCAACTATGATCCTACACTGCAGATTGGGGAATCATGTTCTTATTAT
TTTACATGAAAAAGTGTATTTTCTTATGCAGTTGTATTACTGTTTTCTAG
TGTTGATGATTAGGATCTTGTTTTTTAATATGTTTTTATTTTACAACTAT
GACCATGCAGGCTGTGGGGGAACAGGCAATATAATGTGTGCAGAATGTGG
CGGACGAGGTCATCTGGGACCTAAATGATCAAAGTCTTCACGTTTTTGAA
TTTTGTTGTACAACCAATATGTAGTCTTTTTGGCTGATATTGCATGTAAC
CATTTTATTTTTATTGTTTTGTAAATCAAGGAGTCGTCATGCCTGAAAAA
AAAATAAGATATTTACAAAATTCTCTGCTATTTCTAAAGCATGAGCTTGT
AATCAGATCAGATGGCTGTCATATTTATTCTTAATTATGTGATTCCTCGA
AGTACTTGTAATAATACTTTTACATGAAAGTTACAGACAGTTGATTTATT
TCTTTAAGGAAAATTGTGT
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Coding sequence (CDS) from alignment at Vu01:25595386..25599504+

>Vigun01g093300.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g093300.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g093300.1; organism=Vigna unguiculata; type=CDS; length=516bp; location=Sequence derived from: Vu01:25595386..25599504+ (Vigna unguiculata
ATGGATTCAGCTTCTATGCAAGTAGCAACCTCAAAATTTGTTCTTTGCCC
CAATGCTTCAGCGGCTAAGGTTGCAGGTTCCAAGAAGATTGCCACCGTCA
ATTTCAGGTCCAAATTCAAAGGATGTGAAACCAAAATCCATGTCGTTTCC
TCAAATGGCTCTGTCTCTAGCTCCTCTTCGCGTCGGTCTGTATCAAGTTT
GAAAGCAGATGATAACAAACGCAGAAGTAATCTTGAATCTCTGTTTTGTT
ATGATAAAGCCATTCCAGAAGAAATAATTGAGAAGCCTGTTGGGCTATCT
TTGGAAGAAAAATCTATTGGTAACAATTCCAGATGCACTGATTGCGAGGC
CAAAGGTGCTGTGCTTTGTGTCACTTGTGCTGGTTCTGGTCTATACGTTG
ATTCCATATTGGAAAGCCAGGGCATAATTGTTAAAGTTCGTTGCTTAGGC
TGTGGGGGAACAGGCAATATAATGTGTGCAGAATGTGGCGGACGAGGTCA
TCTGGGACCTAAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036410HSP_DnaJ_Cys-rich_dom_sf