Vigun01g162100.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: MYB36_ARATH (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 1.737e-74 Identity = 104/119 (87.39%), Postives = 113/119 (94.96%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMA 357
MGRAPCCDKANVKKGPWSPEED KLKDYID++GTGGNWIALPQK+GLKRCGKSCRLRWLNYLRPNIKHG FS+ ED+II SL+ SIGSRWSIIA+QLPGRTDNDIKNYWNTKLKKK++
Sbjct: 1 MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLG 119
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 6.323e-73 Identity = 105/130 (80.77%), Postives = 117/130 (90.00%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNASPQKKPLQ 390
MGRAPCCDKANVKKGPWSPEEDAKLK YI+ GTGGNWIALPQK+GLKRCGKSCRLRWLNYLRPNIKHG FS+ E+ IICSL+ +IGSRWSIIA+QLPGRTDNDIKNYWNT+LKKK++ + Q+K LQ
Sbjct: 1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLI----NKQRKELQ 126
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 1.004e-71 Identity = 101/124 (81.45%), Postives = 112/124 (90.32%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNASP 372
MGRAPCCDKANVK+GPWSPEEDAKLKDYI++ GTGGNWIALP K GL+RCGKSCRLRWLNYLRPNI+HG F++ ED II SLFASIGSRWS+IA+ L GRTDNDIKNYWNTKLKKK++A A P
Sbjct: 1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIATMAPP 124
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: MYB87_ARATH (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 3.601e-69 Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMA 357
MGRAPCCDK VKKGPWS EEDA LK YI++HGTG NWI+LPQ++G+KRCGKSCRLRWLNYLRPN+KHG F+D ED IICSL+ +IGSRWSIIASQLPGRTDNDIKNYWNT+LKKK+++
Sbjct: 1 MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLNYLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLS 119
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 1.993e-67 Identity = 93/118 (78.81%), Postives = 108/118 (91.53%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMM 354
MGRAPCCDK VK+GPWSPEED+KL+DYI+++G GGNWI+ P K GL+RCGKSCRLRWLNYLRPNIKHG FS+ ED+II SLFA+IGSRWSIIA+ LPGRTDNDIKNYWNTKL+KK++
Sbjct: 1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLL 118
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: MYB80_ARATH (Transcription factor MYB80 OS=Arabidopsis thaliana OX=3702 GN=MYB80 PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 6.690e-56 Identity = 82/124 (66.13%), Postives = 99/124 (79.84%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNASP 372
MGR PCC+K NVK+G W+PEED KL YI QHGT NW +P+ GL+RCGKSCRLRW NYLRP++KHGQFS+AE+ II + +G+RWS+IA+QLPGRTDND+KNYWNTKLKKK+ M P
Sbjct: 1 MGRIPCCEKENVKRGQWTPEEDNKLASYIAQHGTR-NWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSEAEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNYWNTKLKKKLSGMGIDP 123
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: MYB80_ORYSJ (Transcription factor MYB80 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB80 PE=2 SV=2) HSP 1 Score: 182.185 bits (461), Expect = 1.868e-53 Identity = 79/124 (63.71%), Postives = 100/124 (80.65%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNASP 372
MGR PCC+K NVK+G W+PEED KL YI Q+GT NW +P+ GL+RCGKSCRLRW NYLRP++KHG+F+DAE++ I L + +G+RWS+IA+QLPGRTDND+KN+WNTKLKKK+ M P
Sbjct: 1 MGRVPCCEKDNVKRGQWTPEEDNKLLSYITQYGTR-NWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGEFTDAEEQTIIKLHSVVGNRWSVIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDP 123
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: MY106_ARATH (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.350e-52 Identity = 78/124 (62.90%), Postives = 99/124 (79.84%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNASP 372
MGR+PCCDKA +KKGPW+PEED KL YI++HG G +W +LP+K GL+RCGKSCRLRW NYLRP+IK G+F+ E++ I L A +G+RWS IA+ LP RTDN+IKNYWNT LKK+++ M P
Sbjct: 1 MGRSPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHG-SWRSLPEKAGLQRCGKSCRLRWTNYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDP 123
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: MYB16_ARATH (Transcription factor MYB16 OS=Arabidopsis thaliana OX=3702 GN=MYB16 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.051e-51 Identity = 77/124 (62.10%), Postives = 97/124 (78.23%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNASP 372
MGR+PCCDK +KKGPW+PEED KL YI++HG G +W +LP+K GL RCGKSCRLRW NYLRP+IK G+F+ E++ I L A +G+RWS IA+ LP RTDN+IKNYWNT LKK+++ M P
Sbjct: 1 MGRSPCCDKLGLKKGPWTPEEDQKLLAYIEEHGHG-SWRSLPEKAGLHRCGKSCRLRWTNYLRPDIKRGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMGIDP 123
BLAST of Vigun01g162100.1 vs. DB:Swiss
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana OX=3702 GN=MYB6 PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 3.025e-50 Identity = 73/125 (58.40%), Postives = 97/125 (77.60%), Query Frame = 1 Query: 1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNASPQ 375
MGR+PCC+KA+ KG W+ EED +L DYI HG G W +LP+ GL RCGKSCRLRW+NYLRP++K G F+D ED+II L + +G++WS+IA +LPGRTDN+IKNYWNT +K+K+++ PQ
Sbjct: 1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGC-WRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQ 124 The following BLAST results are available for this feature:
BLAST of Vigun01g162100.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g162100.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g162100.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g162100.1; organism=Vigna unguiculata; type=mRNA; length=1592bpback to top protein sequence of Vigun01g162100.1_Vu_IT97K-499-35_v1.1 >Vigun01g162100.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g162100.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g162100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=311bpback to top mRNA from alignment at Vu01:34401453..34403403- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g162100.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g162100.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g162100.1; organism=Vigna unguiculata; type=mRNA; length=1951bp; location=Sequence derived from: Vu01:34401453..34403403- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:34401453..34403403- >Vigun01g162100.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g162100.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g162100.1; organism=Vigna unguiculata; type=CDS; length=933bp; location=Sequence derived from: Vu01:34401453..34403403- (Vigna unguiculataback to top |