Vigun01g181200.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.156e-21 Identity = 50/170 (29.41%), Postives = 97/170 (57.06%), Query Frame = 1 Query: 10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGKS-LSDLDASDISRLLCYVEGKLKCGGVKVDI-SKQQLSTYKPPTPLVS 513 ++K+ L LIEN V+RK + K ++ + KK+ ++ TLC V ACA++Y P +++P WPS + ++++ KF + +R KK V + +I Q K + Q+ KL+ +N + ++ +G++ + +LD D+ L Y++ L +++I + S+ P P+V+ Sbjct: 2 KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSREGVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLKGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPLPIVA 171
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 2.479e-18 Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1 Query: 13 KKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRL 414 KKV L LI N +RK + K ++ + KK+ +++TLC V ACA+IY P VP WPS + AK++ +F P R KK + + Y+ + K + Q+ L +N E + F++ EGK S DA D+ L Sbjct: 2 KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREGAKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEGKMSQYHYDAKDLQDL 136
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 3.056e-18 Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = 1 Query: 13 KKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLL 417 KKV L LI N +RK + K + + KK+ +++TLC V ACA+IY P VP WPS + AK++ KF P R +K + + ++ + K + Q+ L +N E + F++ EGK S DA D+ LL Sbjct: 2 KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREGAKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEGKMSQYRYDAKDLQDLL 137
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL92_ARATH (Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana OX=3702 GN=AGL92 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.427e-17 Identity = 47/144 (32.64%), Postives = 80/144 (55.56%), Query Frame = 1 Query: 10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLLCYVEGKL 438 R K L LI + R+A +RK + KK+ ++TTLCD+ ACA+IY P +N PTVWPS + +E++ +F P ER K ++ + ++ K + ++ L+++N E + +F++ GK S A D+ L + + L Sbjct: 2 RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFEN-PTVWPSTEGVQEVISEFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVGGKMSEQQYGARDLQDLSLFTDQYL 144
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL86_ARATH (Agamous-like MADS-box protein AGL86 OS=Arabidopsis thaliana OX=3702 GN=AGL86 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 5.514e-17 Identity = 45/141 (31.91%), Postives = 77/141 (54.61%), Query Frame = 1 Query: 10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLLCYVE 429 R K+ L LI N +R+ +RK + + K+ ++TTLC V ACA+I P +N P VWPS + +E + F P E+ K ++ + Y++ K +++ L+++N E + F++ EGK S A D+ L Y++ Sbjct: 2 RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYEN-PVVWPSTEGVQEAVSMFMERPATEQSKLMMSHETYLQDKITKETKKLESLRRENRESQLRQFMFDCVEGKMSEHQYGARDLQDLSLYID 141
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.203e-16 Identity = 53/192 (27.60%), Postives = 96/192 (50.00%), Query Frame = 1 Query: 10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLLCYVEGKLKCGGVKVDISKQQ-LSTYKPPTPLVSFPLQNDIDSCANIDEQVFQQQS 579 R K+ L IEN RK + K ++ +LKK ++ TLC V+ACA+I P +++ WPS + +E++ KF + +R KK V + ++ Q K ++ KL+ +N + + ++ +G+ +S L D+ L ++ L +V+I K+ S+ P P+ P D D ++ Q Q+ Sbjct: 2 RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSREGVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLKGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPIGVAPTVVDASVPIGFDGRMIQDQN 193
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.860e-13 Identity = 48/153 (31.37%), Postives = 87/153 (56.86%), Query Frame = 1 Query: 10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLLCYVEGKLKCGGVKVDI 465 RKKV L I N +RKA ++K ++ L+KK+ +++TLC + ACAIIY P D P VWPS+ + ++ +F P ++ KK V + +++Q K + + +K + E +M+ +++ G + L+ D++ L +E LK +++I Sbjct: 3 RKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQCLIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEI 155
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS20 PE=2 SV=2) HSP 1 Score: 53.1434 bits (126), Expect = 4.761e-7 Identity = 27/74 (36.49%), Postives = 41/74 (55.41%), Query Frame = 1 Query: 10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPL 231 R KV ++ IEN V+R+ + K R LLKK +I LCDV+ AI++ N+ SH + +L K++ L Sbjct: 3 RGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHEL 76 The following BLAST results are available for this feature:
BLAST of Vigun01g181200.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 8
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g181200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181200.1; organism=Vigna unguiculata; type=mRNA; length=843bpback to top protein sequence of Vigun01g181200.1_Vu_IT97K-499-35_v1.1 >Vigun01g181200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=281bpback to top mRNA from alignment at Vu01:36225153..36225995+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g181200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181200.1; organism=Vigna unguiculata; type=mRNA; length=843bp; location=Sequence derived from: Vu01:36225153..36225995+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:36225153..36225995+ >Vigun01g181200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181200.1; organism=Vigna unguiculata; type=CDS; length=843bp; location=Sequence derived from: Vu01:36225153..36225995+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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