Vigun01g181200.1

Transcript Overview
NameVigun01g181200.1
Unique NameVigun01g181200.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length843
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:36225153..36225995 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR019Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuR026Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL003Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL220Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL000Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL474Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL578Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL006Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL164Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0225Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL260Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0474Cajanus cajan Asha genome v1.0Cajanus cajan
asvuL327Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL406Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL575Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR021Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR037Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR043Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL121Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL114Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL353Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL331Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL581Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL538Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvuL013Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL437Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL756Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR000Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR018Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL005Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL143Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL221Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL270Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL337Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL500Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL001Cicer arietinum
carvuL159Cicer arietinum
carvuL236Cicer arietinum
ccavuL070Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL184Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL259Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR019Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR036Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR059Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR058Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL307Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL486Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL548Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL324Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL504Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL553Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR014Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR020Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
XM_058884762.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigst.04G230500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cc_v2.0_07985.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va03G076420.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigan.04G355000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Tiffany.R1.5g124120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan03g250500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg31608.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.001G196900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_003215Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Hedin2.R1.5g154800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr01.1732Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g181200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g181200Vigun01g181200_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g181200.1Vigun01g181200.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun01g181200.1_Vu_IT97K-499-35_v1.1Vigun01g181200.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g181200.1.v1.1.CDS.1Vigun01g181200.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.156e-21
Identity = 50/170 (29.41%), Postives = 97/170 (57.06%), Query Frame = 1
Query:   10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGKS-LSDLDASDISRLLCYVEGKLKCGGVKVDI-SKQQLSTYKPPTPLVS 513
            ++K+ L LIEN V+RK  + K ++ + KK+ ++ TLC V ACA++Y P +++P  WPS +  ++++ KF    + +R KK V  + +I Q   K + Q+ KL+ +N    +   ++   +G++ + +LD  D+  L  Y++  L     +++I  +   S+   P P+V+
Sbjct:    2 KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSREGVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLKGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPLPIVA 171          
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.479e-18
Identity = 49/135 (36.30%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   13 KKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRL 414
            KKV L LI N  +RK  + K ++ + KK+ +++TLC V ACA+IY P   VP  WPS + AK++  +F   P   R KK +  + Y+ +   K + Q+  L  +N E  +  F++   EGK S    DA D+  L
Sbjct:    2 KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREGAKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEGKMSQYHYDAKDLQDL 136          
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 3.056e-18
Identity = 49/136 (36.03%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   13 KKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLL 417
            KKV L LI N  +RK  + K +  + KK+ +++TLC V ACA+IY P   VP  WPS + AK++  KF   P   R +K +  + ++ +   K + Q+  L  +N E  +  F++   EGK S    DA D+  LL
Sbjct:    2 KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREGAKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEGKMSQYRYDAKDLQDLL 137          
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL92_ARATH (Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana OX=3702 GN=AGL92 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.427e-17
Identity = 47/144 (32.64%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLLCYVEGKL 438
            R K  L LI +   R+A +RK    + KK+ ++TTLCD+ ACA+IY P +N PTVWPS +  +E++ +F   P  ER K  ++ + ++     K + ++  L+++N E  + +F++    GK S     A D+  L  + +  L
Sbjct:    2 RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFEN-PTVWPSTEGVQEVISEFMEKPATERSKTMMSHETFLRDQITKEQNKLESLRRENRETQLKHFMFDCVGGKMSEQQYGARDLQDLSLFTDQYL 144          
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL86_ARATH (Agamous-like MADS-box protein AGL86 OS=Arabidopsis thaliana OX=3702 GN=AGL86 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.514e-17
Identity = 45/141 (31.91%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLLCYVE 429
            R K+ L LI N  +R+  +RK +  +  K+ ++TTLC V ACA+I  P +N P VWPS +  +E +  F   P  E+ K  ++ + Y++    K  +++  L+++N E  +  F++   EGK S     A D+  L  Y++
Sbjct:    2 RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYEN-PVVWPSTEGVQEAVSMFMERPATEQSKLMMSHETYLQDKITKETKKLESLRRENRESQLRQFMFDCVEGKMSEHQYGARDLQDLSLYID 141          
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.203e-16
Identity = 53/192 (27.60%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLLCYVEGKLKCGGVKVDISKQQ-LSTYKPPTPLVSFPLQNDIDSCANIDEQVFQQQS 579
            R K+ L  IEN   RK  + K ++ +LKK  ++ TLC V+ACA+I  P +++   WPS +  +E++ KF    + +R KK V  + ++ Q   K   ++ KL+ +N    + + ++   +G+  +S L   D+  L  ++   L     +V+I K+   S+   P P+   P   D       D ++ Q Q+
Sbjct:    2 RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSREGVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLKGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPIGVAPTVVDASVPIGFDGRMIQDQN 193          
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.860e-13
Identity = 48/153 (31.37%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIERQVMKLKKKNDERDMSNFLYKIHEGK-SLSDLDASDISRLLCYVEGKLKCGGVKVDI 465
            RKKV L  I N  +RKA ++K ++ L+KK+ +++TLC + ACAIIY P D  P VWPS+   + ++ +F   P  ++ KK V  + +++Q   K    + + +K + E +M+  +++   G   +  L+  D++ L   +E  LK    +++I
Sbjct:    3 RKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPSNSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQCLIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEI 155          
BLAST of Vigun01g181200.1 vs. DB:Swiss
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS20 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 4.761e-7
Identity = 27/74 (36.49%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   10 RKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYGPGDNVPTVWPSHDIAKELLHKFENAPL 231
            R KV ++ IEN V+R+  + K R  LLKK  +I  LCDV+  AI++    N+     SH   + +L K++   L
Sbjct:    3 RGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHEL 76          
The following BLAST results are available for this feature:
BLAST of Vigun01g181200.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 8
Match NameE-valueIdentityDescription
PHE2_ARATH3.156e-2129.41MADS-box transcription factor PHERES 2 OS=Arabidop... [more]
AGL36_ARATH2.479e-1836.30Agamous-like MADS-box protein AGL36 OS=Arabidopsis... [more]
AGL90_ARATH3.056e-1836.03Agamous-like MADS-box protein AGL90 OS=Arabidopsis... [more]
AGL92_ARATH1.427e-1732.64Agamous-like MADS-box protein AGL92 OS=Arabidopsis... [more]
AGL86_ARATH5.514e-1731.91Agamous-like MADS-box protein AGL86 OS=Arabidopsis... [more]
PHE1_ARATH3.203e-1627.60MADS-box transcription factor PHERES 1 OS=Arabidop... [more]
AGL80_ARATH1.860e-1331.37Agamous-like MADS-box protein AGL80 OS=Arabidopsis... [more]
MAD20_ORYSJ4.761e-736.49MADS-box transcription factor 20 OS=Oryza sativa s... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..212
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 39..60
score: 20.25
coord: 24..39
score: 41.2
coord: 4..24
score: 37.47
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 2..61
e-value: 2.7E-10
score: 50.2
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 12..55
e-value: 8.7E-10
score: 37.9
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 2..50
score: 12.264
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 16..99
e-value: 2.4E-6
score: 29.4
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 4..90
IPR033897MADS SRF-likeCDDcd00266MADS_SRF_likecoord: 4..84
e-value: 1.7573E-17
score: 73.4483

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g181200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181200.1; organism=Vigna unguiculata; type=mRNA; length=843bp
ATGCCAAGGAGAAAGAAAGTGACACTAAAACTGATAGAGAATTTTGTGGC
AAGAAAAGCTCGTTACAGAAAAATTCGAGAAAATTTATTGAAGAAGATGG
AAGATATTACCACCCTTTGTGATGTGAATGCATGTGCAATCATCTATGGC
CCAGGGGACAACGTGCCAACTGTGTGGCCATCCCATGATATTGCTAAAGA
GTTGCTCCACAAGTTTGAGAATGCTCCATTGCCAGAAAGGGTAAAAAAAA
ATGTTACTCCACAAGTTTATATCGAGCAGATGAACAGAAAGATTGAAAGA
CAAGTCATGAAACTGAAGAAGAAGAACGATGAGAGAGACATGTCAAATTT
CTTGTACAAAATACATGAGGGTAAGTCTTTATCGGATCTTGATGCTAGCG
ATATATCTCGTTTACTTTGTTATGTGGAGGGAAAGTTGAAGTGTGGTGGA
GTAAAAGTTGACATTTCTAAACAACAGTTATCAACTTATAAACCTCCGAC
ACCACTGGTTTCTTTTCCTCTGCAGAATGACATTGATTCTTGTGCGAACA
TAGATGAACAAGTTTTTCAACAACAATCATCATTAGATTCAACGAAAGAA
ACTGGTCCAATGAACAGTGATTCTGATAATAAGGGGTTGTCTCAAGTCAG
TGTTGAAAGTTTGAATTTGGATGATACTGATGTGGTGTTACCTTCTGGAA
ATTTTAATGATGTGATTGATGATAATGACTTGGCATTTGGGATGATATTG
CCTCAAGATAATTTTATAGATCTTTGTGATAATGGTGATTTAGGACTTTT
ACATGGGAGTTCTTCAGGTGAAATTACAGGCAATGACATATAG
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protein sequence of Vigun01g181200.1_Vu_IT97K-499-35_v1.1

>Vigun01g181200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=281bp
MPRRKKVTLKLIENFVARKARYRKIRENLLKKMEDITTLCDVNACAIIYG
PGDNVPTVWPSHDIAKELLHKFENAPLPERVKKNVTPQVYIEQMNRKIER
QVMKLKKKNDERDMSNFLYKIHEGKSLSDLDASDISRLLCYVEGKLKCGG
VKVDISKQQLSTYKPPTPLVSFPLQNDIDSCANIDEQVFQQQSSLDSTKE
TGPMNSDSDNKGLSQVSVESLNLDDTDVVLPSGNFNDVIDDNDLAFGMIL
PQDNFIDLCDNGDLGLLHGSSSGEITGNDI*
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mRNA from alignment at Vu01:36225153..36225995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g181200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181200.1; organism=Vigna unguiculata; type=mRNA; length=843bp; location=Sequence derived from: Vu01:36225153..36225995+ (Vigna unguiculata
ATGCCAAGGAGAAAGAAAGTGACACTAAAACTGATAGAGAATTTTGTGGC AAGAAAAGCTCGTTACAGAAAAATTCGAGAAAATTTATTGAAGAAGATGG AAGATATTACCACCCTTTGTGATGTGAATGCATGTGCAATCATCTATGGC CCAGGGGACAACGTGCCAACTGTGTGGCCATCCCATGATATTGCTAAAGA GTTGCTCCACAAGTTTGAGAATGCTCCATTGCCAGAAAGGGTAAAAAAAA ATGTTACTCCACAAGTTTATATCGAGCAGATGAACAGAAAGATTGAAAGA CAAGTCATGAAACTGAAGAAGAAGAACGATGAGAGAGACATGTCAAATTT CTTGTACAAAATACATGAGGGTAAGTCTTTATCGGATCTTGATGCTAGCG ATATATCTCGTTTACTTTGTTATGTGGAGGGAAAGTTGAAGTGTGGTGGA GTAAAAGTTGACATTTCTAAACAACAGTTATCAACTTATAAACCTCCGAC ACCACTGGTTTCTTTTCCTCTGCAGAATGACATTGATTCTTGTGCGAACA TAGATGAACAAGTTTTTCAACAACAATCATCATTAGATTCAACGAAAGAA ACTGGTCCAATGAACAGTGATTCTGATAATAAGGGGTTGTCTCAAGTCAG TGTTGAAAGTTTGAATTTGGATGATACTGATGTGGTGTTACCTTCTGGAA ATTTTAATGATGTGATTGATGATAATGACTTGGCATTTGGGATGATATTG CCTCAAGATAATTTTATAGATCTTTGTGATAATGGTGATTTAGGACTTTT ACATGGGAGTTCTTCAGGTGAAATTACAGGCAATGACATATAG
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Coding sequence (CDS) from alignment at Vu01:36225153..36225995+

>Vigun01g181200.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g181200.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g181200.1; organism=Vigna unguiculata; type=CDS; length=843bp; location=Sequence derived from: Vu01:36225153..36225995+ (Vigna unguiculata
ATGCCAAGGAGAAAGAAAGTGACACTAAAACTGATAGAGAATTTTGTGGC
AAGAAAAGCTCGTTACAGAAAAATTCGAGAAAATTTATTGAAGAAGATGG
AAGATATTACCACCCTTTGTGATGTGAATGCATGTGCAATCATCTATGGC
CCAGGGGACAACGTGCCAACTGTGTGGCCATCCCATGATATTGCTAAAGA
GTTGCTCCACAAGTTTGAGAATGCTCCATTGCCAGAAAGGGTAAAAAAAA
ATGTTACTCCACAAGTTTATATCGAGCAGATGAACAGAAAGATTGAAAGA
CAAGTCATGAAACTGAAGAAGAAGAACGATGAGAGAGACATGTCAAATTT
CTTGTACAAAATACATGAGGGTAAGTCTTTATCGGATCTTGATGCTAGCG
ATATATCTCGTTTACTTTGTTATGTGGAGGGAAAGTTGAAGTGTGGTGGA
GTAAAAGTTGACATTTCTAAACAACAGTTATCAACTTATAAACCTCCGAC
ACCACTGGTTTCTTTTCCTCTGCAGAATGACATTGATTCTTGTGCGAACA
TAGATGAACAAGTTTTTCAACAACAATCATCATTAGATTCAACGAAAGAA
ACTGGTCCAATGAACAGTGATTCTGATAATAAGGGGTTGTCTCAAGTCAG
TGTTGAAAGTTTGAATTTGGATGATACTGATGTGGTGTTACCTTCTGGAA
ATTTTAATGATGTGATTGATGATAATGACTTGGCATTTGGGATGATATTG
CCTCAAGATAATTTTATAGATCTTTGTGATAATGGTGATTTAGGACTTTT
ACATGGGAGTTCTTCAGGTGAAATTACAGGCAATGACATATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR036879TF_MADSbox_sf
IPR033897MADS_SRF-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987cis-regulatory region sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription by RNA polymerase II