Vigun01g184600.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g184600.1 vs. DB:Swiss
Match: LPPD_ARATH (Lipid phosphate phosphatase delta OS=Arabidopsis thaliana OX=3702 GN=LPPD PE=2 SV=1) HSP 1 Score: 528.865 bits (1361), Expect = 0.000e+0 Identity = 276/407 (67.81%), Postives = 329/407 (80.84%), Query Frame = 1
Query: 10 EGAAVWQGAVLGGILFWIVSASYLDVTRKLRSLFQPWVSHHVETQTSVVLKIQSYGSGFLDALFSGLSCVVSVPFYTGFLPLLFWSGHGKLARQMTLLMAFCDYLGNCIKDXXXXXXXXXXXXXXXTATKDEEENALEYGLPSSHTLNTVCLSGYLLHYVLTHTQIQGAYVTYLGISLAFMLVLLIGLGRIYLGMHSVVDVXXXXXXXXXXXXXXXTVHEHIDNFVISGQNVTSFWAVLSFLLLFAYPTPELPTPSFEFHTAFNGVALGIVAGVQQTYHQFHHGDVPRLFSSEMSVAVFAGRMLVGIPTILTVKFCSKALAKWIIPMVANTLGIPIKSTSYIPTLNGSAALKKTDKLRQ--GYFQKLLS--RHKAFDVDTGIRFLQYAGLAWSVVDLVPSLFSYMSL 1218
EG+ WQG VL GI+ WI ++SYL T K RSL QPWV+ V ++L+IQ +G LDA FSGLSCVVSVPFYT FLPLLFWSGHG+LARQMTLL+AFCDYLGNCIKDVVSAPRP+ PPV+R+TATKDEE+NA+EYGLPSSHTLNTVCLSGYLLHYVL+ + + + Y G +LA +LV LI GR+YLGMHSVVD+++GL G+LIL WLTV+E +D+F+ S QNV+SFW LSFLLLFAYPTPE PTPS+E+HTAFNGV LGIV GVQQTY QFHH PR+FS E+ ++ + GR++VGIPTIL VKFCSK+LAKW +PMV+N LGIPI+S+ YIP L G A+ KKTD+ + GY QKL H +FD+DTGIRF QYAGLAWSVVDLVPSLFSY++L
Sbjct: 10 EGSGTWQGLVLVGIVTWICASSYLKFTHKFRSLLQPWVARQVVGGVPLILRIQKCQNGVLDAFFSGLSCVVSVPFYTAFLPLLFWSGHGRLARQMTLLIAFCDYLGNCIKDVVSAPRPSCPPVRRITATKDEEDNAMEYGLPSSHTLNTVCLSGYLLHYVLSSLEYESVSIQYYGFALACLLVALIAFGRVYLGMHSVVDIVSGLAIGVLILGLWLTVNEKLDDFITSKQNVSSFWTALSFLLLFAYPTPEHPTPSYEYHTAFNGVTLGIVTGVQQTYSQFHHEAAPRIFSPELPISSYLGRVMVGIPTILLVKFCSKSLAKWTLPMVSNALGIPIRSSMYIPKLKGYASGKKTDEPKNSVGYLQKLCEFLSHDSFDIDTGIRFFQYAGLAWSVVDLVPSLFSYVNL 416
BLAST of Vigun01g184600.1 vs. DB:Swiss
Match: DS1PP_SCHPO (Dihydrosphingosine 1-phosphate phosphatase C823.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC823.11 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 9.153e-14 Identity = 105/387 (27.13%), Postives = 168/387 (43.41%), Query Frame = 1
Query: 94 KLRSLFQPWVSHHVETQTSVVLKIQSY-GSGFLDALFSGLSCVVSVPFYTGFLPLLFWSGHGKLARQMTLLMAFCDYLGNCIKDXXXXXXXXXXXXXXXTATKDEEENALEYGLPSSHTLNTVCLSGYLLHYVLTHTQIQGAYVTYLGISLAFMLVLLIGLGRIYLGMHSVVDVXXXXXXXXXXXXXXXTVHEHIDN-FVISGQNVTSFWAVLSFLLLFAYPTPELPTPSFEFHTAFNGVALGIVAGV----QQTYHQFHHGDVPRLFSSEMSVAVFAGRMLVGIPTILTVKFCSKALAKWIIPMVANTLGIPI-----KSTSYIPTLNGSAALKKTDKLRQGYFQKLLSRHKA------FDVDTGIRFLQYAGLAWSVVDLVPSLF 1203
+LR L P V +T ++ KIQS+ + +LD F + + + F+ LP+ FWSG +T L A Y CIKD PRP SPP+ R+T + D E EYG PS+HT N + Y L +L+ + + Y +SL + + I LGRIY GMH +DV G + G+ + F + N + S +V VL+ ++ +P P E +F V +GI G ++ H +S + F R+L G+ IL K +K ++P + +L + +S I GS G +++ H++ FD++T R + Y+G+ + P +F
Sbjct: 37 QLRELILPIV----RKETRLLYKIQSFFRNPWLDVYFMYTATLGTHVFFMLALPIFFWSGCIYYTLDITQLFAAGVYFSGCIKDYFCLPRPRSPPMVRLTLSSDAE---YEYGFPSTHTTNAMATGFYSLFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRIYCGMHGFMDVSTGTILGVTLAIFQWKYADFFHNVWSSSSTSVPILSVVLALFFIWFHPQPAERCICLEDSISFISVIMGIDLGTWFASPESLSHLHDN-----LNSYFLLKFFV-RVLFGVCMILIWKSFAKQALLAVLPPIFKSLRLSYLEPKSQSEKGIRAATGSNHSPGNIGTELG----VITSHQSHPHPVRFDIETIARIIVYSGIGFLCTYFAPKVF 406
BLAST of Vigun01g184600.1 vs. DB:Swiss
Match: DS1P1_YEAST (Dihydrosphingosine 1-phosphate phosphatase LCB3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LCB3 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.432e-12 Identity = 99/360 (27.50%), Postives = 154/360 (42.78%), Query Frame = 1
Query: 166 QSYGSGFLDALFSGLSCVVSVPFYTGFLPLLFWSGHGKLARQMTLLMAFCDYLGNCIKDXXXXXXXXXXXXXXXTATKDEEENALEYGLPSSHTLNTVCLSGYLLHYVLTHTQIQGAYVTYLGISLAFMLVLLIGLGRIYLGMHSVVDVXXXXXXXXXXXXXXXTVHEHIDNFVISGQNVTSFWAV-LSFLLLFAYPTPELPTPSFEFHTAFNGVA--------LGIVAGVQQTYHQFHHGDVPRLFSSEMSVAVFAGRMLVGIPTILTVKFCSKALAKWIIPMVANTLGIPIKSTSYIPTLNGSAALKKTDKLRQGYFQKLLSRHKAFDVDTGIRFLQYAGLAWSVVDLVPSLFSYMSL 1218
+ Y S F D F+ S + S FY LP+ W G+ + + M ++ + YL KD PRP +PP+ R+T + E EYG PSSHT N +S L Y + Q V L + + + GRIY GMH ++D+++G L G++ + I ++V LLLF + P P F+ AF GV LG V GV Y+ + R+LVG+P ++ K+ ++K PM+ TL I + + L+ T K ++ L + +D RF+ YAG+ ++VV P LFS +++
Sbjct: 71 KKYRSAFNDLYFTYTSLMGSHTFYVLCLPMPVWFGYFETTKDMVYILGYSIYLSGFFKDYWCLPRPRAPPLHRITLS---EYTTKEYGAPSSHTANATGVS-LLFLYNIWRMQESSVMVQLLLSCVVLFYYMTLVFGRIYCGMHGILDLVSGGLIGIVCFIVRMYFKYRFPGLRIEEHWWFPLFSVGWGLLLLFKHVKPVDECPCFQDSVAFMGVVSGIECCDWLGKVFGVTLVYN----------LEPNCGWRLTLARLLVGLPCVVIWKY---VISK---PMIY-TLLIKVFHLKDDRNVAARKRLEATHKEGASKYECPLYIGEP-KIDILGRFIIYAGVPFTVVMCSPVLFSLLNI 408
BLAST of Vigun01g184600.1 vs. DB:Swiss
Match: DS1P2_YEAST (Dihydrosphingosine 1-phosphate phosphatase YSR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YSR3 PE=3 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 3.528e-10 Identity = 101/387 (26.10%), Postives = 167/387 (43.15%), Query Frame = 1
Query: 97 LRSLFQPWVSHHVETQTSVVLKIQS-YGSGFLDALFSGLSCVVSVPFYTGFLPLLFWSGHGKLARQMTLLMAFCDYLGNCIKDXXXXXXXXXXXXXXXTATKDEEENALEYGLPSSHTLNTVCLS-GYLLHYVLTHTQIQGAYVTYLGISLAFMLVLLIGLGRIYLGMHSVVDVXXXXXXXXXXXXXXXTVHEHIDNFVISGQNVTSFWAVLS----FLLLFAYPTPELPTPSFEFHTAFNGVALGIVAGVQQTYHQFHHGDVPRLFSSEMSVAVFAGRMLVGIPTILTVKFCSKALAKWIIPMVANTLGIPIKSTSYIPTLNGSAALKKTDKLRQGYFQKLLSRHKAFDVDTGI-------RFLQYAGLAWSVVDLVPSLFSYMSL 1218
LR + +++ + Q+ V +Q + + F D F S + S FY LP+ W G+ L R M ++ + YL +KD PRP SPPV R+T + E EYG PSSH+ N +S + L+ T + + L + + + L L+ GR+Y GMH ++D+ +G G + + V + NF I G+++ ++ +LS +LF + P P FE AF GV G+ T + R S V + R LVG+ +++ K + S + + TL D+ + +F S + + +G+ RFL YAG+ +V L P F++ +L
Sbjct: 48 LRFQTRQYLTRFTDNQSDFVHSLQKKHRTPFRDVYFKYTSLMGSHMFYVIVLPMPVWLGYRDLTRDMIYVLGYSIYLSGYLKDYWCLPRPKSPPVDRITLS---EYTTKEYGAPSSHSANATAVSLLFFWRICLSDTLVWPTKLLLLSLVIFYYLTLV--FGRVYCGMHGMLDLFSGAAVGAICFFIRIWVVHALRNFQI-GEHL--WFPLLSVAWGLFILFNHVRPIDECPCFEDSVAFIGVVSGLDCSDWLTERYGWNLVCSRYASCGSKVFL---RPLVGVASVIVWK--------------------DVISKTAVYTLLIKLLRFHDDRSEKVHFHNETSEEEECLLYSGVSKVEIVGRFLIYAGIPTTVFLLCPVFFTWTNL 403
BLAST of Vigun01g184600.1 vs. DB:Swiss
Match: SGPP2_MOUSE (Sphingosine-1-phosphate phosphatase 2 OS=Mus musculus OX=10090 GN=Sgpp2 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 3.571e-9 Identity = 56/199 (28.14%), Postives = 93/199 (46.73%), Query Frame = 1
Query: 232 FYTGFLPLLFWSGHGKLARQMTLLMAFCDYLGNCIKDXXXXXXXXXXXXXXXTATKDEEENALEYGLPSSHTLNTVCLSGYLLHYVLTHTQIQGAYVTYLGISLAFMLVLLIGLGRIYLGMHSVVDVXXXXXXXXXXXXXXXTVHEHIDNFVISGQNVTSFWAVLSFLLLFAYPTPELPTPSFEFHTAFNGVALGIVAG 828
FY FLP W+ L+R++ ++ Y+G KD++ PRP+ P + E+ EYG+PS+H + +S LL + Q Y LG+ +A + L+ L R+Y GMH+V+D+L G+L +++A ID+ + V+ FLL + YP + +P+ T G+ G
Sbjct: 56 FYITFLPFTHWNIDPNLSRRLVVIWVLVMYIGQVAKDILKWPRPSFP-----PVVRLEKRIIAEYGMPSTHAMAATAISFTLLISTMDRYQ----YPFILGLMMAVVFSTLVCLSRLYTGMHTVLDILGGVLITAVLIALTYPAWTLIDSLDSASPLFPVCVIVVPFLLCYNYPVSDYYSPTRADTTTIVAAGAGVTLG 245
BLAST of Vigun01g184600.1 vs. DB:Swiss
Match: SGPP2_HUMAN (Sphingosine-1-phosphate phosphatase 2 OS=Homo sapiens OX=9606 GN=SGPP2 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.167e-8 Identity = 59/199 (29.65%), Postives = 94/199 (47.24%), Query Frame = 1
Query: 232 FYTGFLPLLFWSGHGKLARQMTLLMAFCDYLGNCIKDXXXXXXXXXXXXXXXTATKDEEENALEYGLPSSHTLNTVCLSGYLLHYVLTHTQIQGAYVTYLGISLAFMLVLLIGLGRIYLGMHSVVDVXXXXXXXXXXXXXXXTVHEHIDNFVISGQNVTSFWAVLSFLLLFAYPTPELPTPSFEFHTAFNGVALGIVAG 828
FY FLP W+ L+R++ ++ Y+G KDV+ PRP+SP K E+ EYG+PS+H + ++ LL + T + Q +V LG+ +A + L+ L R+Y GMH+V+DVL G+L L++ ID + V+ F L + YP + +P+ T G+ G
Sbjct: 101 FYITFLPFTHWNIDPYLSRRLIIIWVLVMYIGQVAKDVLKWPRPSSP-----PVVKLEKRLIAEYGMPSTHAMAATAIAFTLL--ISTMDRYQYPFV--LGLVMAVVFSTLVCLSRLYTGMHTVLDVLGGVLITALLIVLTYPAWTFIDCLDSASPLFPVCVIVVPFFLCYNYPVSDYYSPTRADTTTILAAGAGVTIG 290 The following BLAST results are available for this feature:
BLAST of Vigun01g184600.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 6
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g184600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g184600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g184600.1; organism=Vigna unguiculata; type=mRNA; length=1849bpback to top protein sequence of Vigun01g184600.1_Vu_IT97K-499-35_v1.1 >Vigun01g184600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g184600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g184600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=407bpback to top mRNA from alignment at Vu01:36498404..36502793- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g184600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g184600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g184600.1; organism=Vigna unguiculata; type=mRNA; length=4390bp; location=Sequence derived from: Vu01:36498404..36502793- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:36498404..36502793- >Vigun01g184600.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g184600.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g184600.1; organism=Vigna unguiculata; type=CDS; length=1221bp; location=Sequence derived from: Vu01:36498404..36502793- (Vigna unguiculataback to top |