Vigun01g184800.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun01g184800.1 vs. DB:Swiss
Match: WTF9_ARATH (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 7.204e-60 Identity = 123/348 (35.34%), Postives = 194/348 (55.75%), Query Frame = 1 Query: 133 QWRGIVKVRLKWVKNRSLDHV--IDKETDLKAACLLKDAINRSSTAFLTAKSVADWQKLLGLTVPVLRFLRRYPTLFQEFPHPRWPSLPCFRLTDTALFLHSQELALHQAHQNDAVERLSKLLMMTRSRALSLYSLHSLKWDLGLPDSFEKTLVPNFPNDFQFVK-SNGVASLKLARWPEEYAVSALQQRNECGTHYREFKRGQSALA---FPMKFPRGYGAQKKVMTWMDEFQKLPYVSPYVDSSKIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLRDELNLPHKFTRIFTRYPGIFYLSLKCKTTTITLREGYQSGKLVDPHPLVRHRDKFYRVMQTGLL 1158 Q R V V +KW ++ D++ I + + LK+ LK+ I + + +++ + ++ + FLR++P++F+EF P + +LP FRLT A L QE ++Q +D +RL KL++M++ L L + +KW LGLPD + + N + F+FV +GV L + + +S LQ+ + + +RG+ +L FP+ +G + K+ W+ EFQKLPYVSPY D S +DP+SD+ EKRVVG LHELL L + +R L L+ LP K + F R+P IFYLS+K KT T LRE Y+ V+ HP++ R K+ ++M+ L Sbjct: 20 QKRTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGPEY-NLPWFRLTPEATELDRQERVVYQTSADDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGGDKVLSVLQK------NAMKKRRGEVSLEEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMKNSEL 360
BLAST of Vigun01g184800.1 vs. DB:Swiss
Match: WTF1_ARATH (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.393e-36 Identity = 105/363 (28.93%), Postives = 178/363 (49.04%), Query Frame = 1 Query: 148 VKVRLKWVKNRSLDHVIDKETDLKAACLLKDAINRSSTAFLTAKSVADWQKLLGLTVP--VLRFLRRYPTLFQEFPHPRWPSLPCFRLTDTALFLHSQELALHQAHQNDAVERLSKLLMMTRSRALSLYSLHSLKWDLGLPDSFEKTLVPNFPNDFQFVKSNGVASLKLARWPEEYAVSALQQRNECGTHYREFKRGQSALAFPMKF-----PRGYGAQKKVMTWMDEFQKLPYVSPYVDSSKIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLRDELNLPHKFTRIFTRYPGIFYLSLKCKTTTITLREGYQSGKLVDPHPLVRHRDKFYRVMQTGLLYRGDGSLKHDDNNSLVEND 1215 V+ +K K + D V+ ++ LK ++ + ++ + + +++ LGL + LR+YP +F+ + SL F++T A L+ E+ + ++ V +L KL+MM+ + + L + LK DLGLP F T+ +P F+ V + +L+L W E AVSA + +E RE + + P KF PRG K + +F+ + Y+SPY D S + + EK GV+HELLSLT K+T ++L R+E + + R+P +FY+SLK + ++ LRE Y++ +L+D PL ++K ++ R G K D+ VE D Sbjct: 72 VRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIALLRKYPGVFEIVEEGAY-SL-RFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVSAAEL-SEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFPRRGGPRK-DEEGREVEID 430
BLAST of Vigun01g184800.1 vs. DB:Swiss
Match: WTF1_MAIZE (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 5.555e-36 Identity = 110/364 (30.22%), Postives = 178/364 (48.90%), Query Frame = 1 Query: 163 KWVKNRSLDHVIDKETDLKAACLLKDAINRSSTAFLTAKSVADWQKLLGLTVP--VLRFLRRYPTLFQEFPHPRWPSLPCFRLTDTALFLHSQELALHQAHQNDAVERLSKLLMMTRSRALSLYSLHSLKWDLGLPDSFEKTLVPNFPNDFQFVKSNGVASLKLARWPEEYAVSALQQRNECGTHYREFKRGQSALAFPMKF-----PRGYGAQKKVMTWMDEFQKLPYVSPYVDSSKIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLRDELNLPHKFTRIFTRYPGIFYLSLKCKTTTITLREGYQSGKLVDPHPLVRHRDKFYRVMQTGLLYR----GDGSLKHDDNNSLVENDEL 1221 K K D VI ++ LK L++ + ++ + + +++ LGLT ++ LRR+P +F + SL FRLT A L+ EL L + AV +L KLLMM++ + + + + LK DLGLP F T+ +P F+ V+ + +L+L W E AVSA + E +R + P+KF P+G + + F+++PY+SPY D S + SD EK GV+HE+LSLT+ K+T ++L R+E + R+P +FY+S K ++ LRE Y+ +LV+ + LV ++K ++ R G G N SL D++ Sbjct: 56 KRRKEAPFDTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRLIALLRRFPGVFDVVEEGVY-SL-RFRLTPAAERLYLDELRLRNESEGLAVAKLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRMDRGPALELTHWDPELAVSAAELAEEESRAREAEER-NLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEMPYISPYADFSHLRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMIIRHPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAVPRFPRRAAVGTGEEAEGMNGSLQSRDQV 416
BLAST of Vigun01g184800.1 vs. DB:Swiss
Match: WTF1_ORYSJ (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 2.443e-35 Identity = 119/401 (29.68%), Postives = 197/401 (49.13%), Query Frame = 1 Query: 145 IVKVRLKWVKNRSLDHVIDKETDLKAACLLKDAINRSSTAFLTAKSVADWQKLLGLTVP--VLRFLRRYPTLFQEFPHPRWPSLPCFRLTDTALFLHSQELALHQAHQNDAVERLSKLLMMTRSRALSLYSLHSLKWDLGLPDSFEKTLVPNFPNDFQFVKSNGVASLKLARWPEEYAVSALQQRNECGTHYREFKRGQSALAFPMKF-----PRGYGAQKKVMTWMDEFQKLPYVSPYVDSSKIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLRDELNLPHKFTRIFTRYPGIFYLSLKCKTTTITLREGYQSGKLVDPHPLVRHRDKFY------RVMQTGL------LYRGDGSLKHDDNNSLVENDELRSEDSGEEEVETSDELCEGESSD 1290 + + +K K D+VI ++ LK L++ + + ++ + + +++ LGLT ++ L+R+P +F+ + SL FRLT A L+ EL L + AV +L KLLMM++ + + + + LK DLGLP F T+ +P F+ V+ + L+L W E AVSA + E E +R + P+KF P+G + + +F+++PY+SPY D S + S EK GV+HE+LSLTL K+T ++L R+E + R+P +FY+SLK ++ LRE Y++ +LV+ LV ++K R + G+ R +G+ + S VE+D ED G ++E G SD Sbjct: 56 VAQAAVKRRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGLTRKRRLIALLKRFPGVFEVVEEGVY-SL-RFRLTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELTHWDPELAVSAAEVAEEENRAREEQER-NLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALVAVPRFPRRGVPATSEEADRTNGAAQMLSEGSDVEDD----EDEGLSDMEDLISEISGGKSD 449
BLAST of Vigun01g184800.1 vs. DB:Swiss
Match: RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 5.244e-31 Identity = 87/271 (32.10%), Postives = 138/271 (50.92%), Query Frame = 1 Query: 331 FLRRYPTLFQEFPHPRWPSLPCFRLTDTAL--FLHSQELALHQAHQNDAVERLSKLLMMTRSRALSLYSLHSLKWDLGLPDSFEKTLVPNFPNDFQFVKSNGVAS--LKLARWPEEYAVSALQQRNECGTHYREFKRGQSALAFPMKFPRGY--GAQKKVMTWMDEFQKLPYVSPYVDSSKIDPNS----DLMEKRVVGVLHELLSLTLHKKTKRNYLRSLRDELNLPHKFTRIFTRYPGIFYLSLK---CKTTTITLREGYQSGKLVDPH 1104 FL ++P +F+ + HP L C RLT AL H E L Q DAV RL KL+MM+ + + L + + + GLP+ FE +++ P F+ + +++ ++ A+++ E + +F + FP G+ G ++ W ++Q+LPY SPY D S D S + +EKR V +HELLSLT+ KK + R+ +NLP K ++ GIFY+S + K T+ LREGY+ G+LV+P+ Sbjct: 104 FLLKFPHVFEIYEHPVQRILYC-RLTRKALDQIRHEHEAVLDQI--PDAVTRLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVW--KWQRLPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPN 369 The following BLAST results are available for this feature:
BLAST of Vigun01g184800.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 5
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g184800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g184800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g184800.1; organism=Vigna unguiculata; type=mRNA; length=2422bpback to top protein sequence of Vigun01g184800.1_Vu_IT97K-499-35_v1.1 >Vigun01g184800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g184800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g184800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=440bpback to top mRNA from alignment at Vu01:36511906..36515309- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun01g184800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g184800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g184800.1; organism=Vigna unguiculata; type=mRNA; length=3404bp; location=Sequence derived from: Vu01:36511906..36515309- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu01:36511906..36515309- >Vigun01g184800.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g184800.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g184800.1; organism=Vigna unguiculata; type=CDS; length=1320bp; location=Sequence derived from: Vu01:36511906..36515309- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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