Vigun05g123600.1

Transcript Overview
NameVigun05g123600.1
Unique NameVigun05g123600.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1788
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu05supercontigVu05:13742466..13744408 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
psvuL226Pisum sativum Cameor genome v1aPisum sativum
pvvuL672Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL453Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anvuL0161Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1057Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL455Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vfhvuL250Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL625Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL582Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL311Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL225Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL355Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjvuL381Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL203Cicer arietinum
carvuL496Cicer arietinum
ccavuL540Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vstvuL341Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL365Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL103Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL595Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Va03G045590.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg6657.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.2g243200.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Phvul.008G099400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.5g035880.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_10415Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014641663.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan03g135200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat3g143160.1Pisum sativum Cameor genome v1aPisum sativum
PvulFLAVERTChr08.1000736Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
jg56632.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
PvulFLAVERTChr10.1000177Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigst.04G107000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-TanjilR_08478Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_21524Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cc_v2.0_16225.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.04G180300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Hedin2.R1.5g043000.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun05g123600Vigun05g123600_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g123600.1Vigun05g123600.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun05g123600.1_Vu_IT97K-499-35_v1.1Vigun05g123600.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g123600.1.v1.1.CDS.2Vigun05g123600.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun05g123600.1.v1.1.CDS.1Vigun05g123600.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g123600.1.v1.1.three_prime_UTR.1Vigun05g123600.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun05g123600.1.v1.1.five_prime_UTR.1Vigun05g123600.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF51_ARATH (Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana OX=3702 GN=DOF5.1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.090e-34
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:  190 IRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            IRPGSMA+RAR+ANIP+ E   KCPRC+STNTKFCYFNNYSL+QPRHFCKACRRYWTRGGALR+VPV
Sbjct:   74 IRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPV 140
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF24_ARATH (Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana OX=3702 GN=DOF2.4 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.964e-34
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:  190 IRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            IR GSM DRAR AN+ + EA  KCPRCESTNTKFCYFNNYSL+QPRHFCK CRRYWTRGGALRNVPV
Sbjct:   68 IRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPV 134
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF36_ARATH (Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana OX=3702 GN=DOF3.6 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 9.603e-31
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:  175 ATAASIRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            A ++  R  SM +RAR+A +P+ EA   CPRC+STNTKFCYFNNYSL+QPRHFCK CRRYWTRGG+LRNVPV
Sbjct:   50 AGSSQARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPV 121
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF11_ARATH (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.939e-30
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:  199 GSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            GSMA+RAR ANIP    P KCPRC+S+NTKFCY+NNY+L+QPRHFCK CRRYWT+GGALRNVPV
Sbjct:   59 GSMAERARQANIPPLAGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPV 122
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF22_ARATH (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.810e-27
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:  172 TATAASIRPGSM----ADRARMA-NIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            TA A ++ P S+    A+RAR+A N    E   KCPRC+S NTKFCYFNNY+L+QPRHFCKACRRYWTRGGALRNVPV
Sbjct:   62 TAAATTVDPSSLNGQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPV 139
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF4_ORYSJ (Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.484e-24
Identity = 50/74 (67.57%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  175 ATAASIR--PGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            A AA IR         +R   IP  EA  KCPRCESTNTKFCY+NNY+LSQPRHFCK+CRRYWT+GG LRNVPV
Sbjct:   18 AAAADIRRAQAQQGPASRCGGIPSPEA-VKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPV 90
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF56_ARATH (Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana OX=3702 GN=DOF5.6 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.137e-23
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:  235 PMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            P  + PQKCPRCEST+TKFCY+NNYSLSQPR+FCK CRRYWT+GG LRN+PV
Sbjct:   67 PPHDHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPV 118
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF17_ARATH (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana OX=3702 GN=DOF1.7 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.213e-23
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:  172 TATAASIRPGSMADRARMANIPMQEAPQ-KCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            T+ AA      M   A+     + E  Q KCPRC+S NTKFCY+NNY+LSQPRHFCK CRRYWT+GGALRN+PV
Sbjct:    5 TSAAAYYHQSMMMTTAKQNQPELPEQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPV 78
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF14_ARATH (Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana OX=3702 GN=DOF1.4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.454e-23
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:  256 KCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            KCPRC+S+NTKFCY+NNYSLSQPRHFCKAC+RYWTRGG LRNVPV
Sbjct:   28 KCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPV 72
[Close]
BLAST of Vigun05g123600.1 vs. DB:Swiss
Match: DOF54_ARATH (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.364e-23
Identity = 42/59 (71.19%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:  214 RARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 390
            RA   NI       KCPRC S NTKFCY+NNY+LSQPRHFCK CRRYWT+GG LRNVPV
Sbjct:   38 RAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPV 96
The following BLAST results are available for this feature:
BLAST of Vigun05g123600.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
DOF51_ARATH4.090e-3485.07Dof zinc finger protein DOF5.1 OS=Arabidopsis thal... [more]
DOF24_ARATH7.964e-3483.58Dof zinc finger protein DOF2.4 OS=Arabidopsis thal... [more]
DOF36_ARATH9.603e-3170.83Dof zinc finger protein DOF3.6 OS=Arabidopsis thal... [more]
DOF11_ARATH5.939e-3078.13Dof zinc finger protein DOF1.1 OS=Arabidopsis thal... [more]
DOF22_ARATH1.810e-2767.95Dof zinc finger protein DOF2.2 OS=Arabidopsis thal... [more]
DOF4_ORYSJ2.484e-2467.57Dof zinc finger protein 4 OS=Oryza sativa subsp. j... [more]
DOF56_ARATH1.137e-2378.85Dof zinc finger protein DOF5.6 OS=Arabidopsis thal... [more]
DOF17_ARATH1.213e-2360.81Dof zinc finger protein DOF1.7 OS=Arabidopsis thal... [more]
DOF14_ARATH3.454e-2388.89Dof zinc finger protein DOF1.4 OS=Arabidopsis thal... [more]
DOF54_ARATH4.364e-2371.19Dof zinc finger protein DOF5.4 OS=Arabidopsis thal... [more]
back to top
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 84..139
e-value: 3.2E-32
score: 110.5
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 87..123
IPR003851Zinc finger, Dof-typePROSITEPS50884ZF_DOF_2coord: 85..139
score: 29.348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..178

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun05g123600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g123600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g123600.1; organism=Vigna unguiculata; type=mRNA; length=1788bp
AAATTATATATAAATACTCAAAAGCACTTCCTTTATTTTTGCTTCTCATT
ACCTCTTCTCCCAAACCCTCCCCTCTCCtctcttctttctttctttcttt
tgctttctttctttccctttctctcttctatcttCAACTCTCTCTCTAAC
TCTTTCATGTGATTCTCTTTACAAAAGAGAAAGCTCCAAGAGGAACCATG
GTTTATACCTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACA
GCAGCCAAATCATCAGCACCAAGGAAACAACACTGCTGTAACCTCCCACC
TTATTCTTCCACCACCGATACAAccgccgccaccgccgccgccCTCACAA
CCCCATGGACTCGGTGCTACTGCCACTGCCGCCTCCATCAGGCCGGGTTC
CATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTCCGC
AGAAGTGTCCTAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAAC
AACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGCAGAAGGTA
CTGGACTCGCGGCGGGGCCTTGAGGAACGTCCCTGTTGGCGGCGGCTGCC
GGAGGAACAAGAGGAGCAGAGGAAGCTCCGGTGGCAGCGCCAGGTCCCCG
GCAAACTCCGATCGCCAAACGGCGAGTGCTGGCTCCGCTTCCACGACCAG
TGGCTCATCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGGGGTGC
CGCCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCACCAC
CTCggtggtggtggtggtggtggaggAGAGATAGGGTTAAACTATGGCTT
GAACTATGGCGCGATTTCAGGTCCAATGGGAGGAATAGGGGACTTGAATT
TCCATATTGGAAACGCTTTAAATGGTGGTGGTGGTGGTTCTGTGTTGTCT
GGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTC
TGGTTTGGAAGCTTCTTCGTCACACGGGTTGTACCCATTTGATGGTGCTA
GTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCTGGG
GTGATGTCTCAGTTTGCTTCAGTCAAAATGGAAGATAATCATCATCAGGA
GCTTGGTTTGCAGAGACAGTTCTTGGGGGTCAACAATAACCCTAATACGA
ATGAGCAATATTGGAgtgctggtggtggtggtggtgCCACTTCTGCTTGG
ACTGATCTTTCTGCTTTCAGTTCTTCTTCCACTACCAGTAACCCCCTATA
GAATTTTCTGCACTCTTGTGAAGTTTCTGGCTTTTGGTTCTTCTGTTTCC
TTTCACAAAGTTTCAACCAATTCGGTTACAATTACCCCCACGTGAAAAGC
TTCGAGGATGGTTAAGTACTTTGCTTTCTTTTATGATCAAATCAAAAACC
CTAGGGATGTTAGTTTTTCTATTTCCCCCCACTTTTAATCTTTATATGTT
GTTATTTCTTCTTCCTTTTCTCTCTCTTTCTTAGGTTTAGGTTGTTTTGT
ATGGGAAGGTTTTACTATATATGGTGAAATTATGAGTTCAAGAGAATGAA
TATTGCAGTCGATAATCAATCATGTCTGATAAAAAATTATGTCTGATACC
AGTATCACTTGATTTCCTCGTATGTATCTATCGAAAATATGATCATTTTT
CTAATGATGAAGAGTGTTGAATTAAGCAAGCTTTATCTTCACTTAATAAA
CGATTTGGAGGAAAATTTGTTGCAGTGATAATAGAAAA
back to top

protein sequence of Vigun05g123600.1_Vu_IT97K-499-35_v1.1

>Vigun05g123600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g123600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g123600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=368bp
MVYTSIPAYIDPANWQQQQPNHQHQGNNTAVTSHLILPPPIQPPPPPPPS
QPHGLGATATAASIRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYF
NNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGGSARS
PANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPPSLRFMAPLHHLGDH
HLGGGGGGGGEIGLNYGLNYGAISGPMGGIGDLNFHIGNALNGGGGGSVL
SGLDQWRMPQTHQFPFLSGLEASSSHGLYPFDGASGSDGYGGTPIKVSTS
GVMSQFASVKMEDNHHQELGLQRQFLGVNNNPNTNEQYWSAGGGGGATSA
WTDLSAFSSSSTTSNPL*
back to top

mRNA from alignment at Vu05:13742466..13744408-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun05g123600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g123600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g123600.1; organism=Vigna unguiculata; type=mRNA; length=1943bp; location=Sequence derived from: Vu05:13742466..13744408- (Vigna unguiculata
AAATTATATATAAATACTCAAAAGCACTTCCTTTATTTTTGCTTCTCATT
ACCTCTTCTCCCAAACCCTCCCCTCTCCTCTCTTCTTTCTTTCTTTCTTT
TGCTTTCTTTCTTTCCCTTTCTCTCTTCTATCTTCAACTCTCTCTCTAAC
TCTTTCATGTGATTCTCTTTACAAAAGAGAAAGCTCCAAGAGGAACCATG
GTTTATACCTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACA
GGTAAAAAAAATTCAACCCTTCTTCAGTTTCCTTCTTTCTCATTTCATTT
CTCACTTCAAAAGCCAAAATTCAAAAGATACATATTCTTTATACCCTTCT
CCTGAATATACCACATATTTCATTTCTTTGCTCCTTCCAACTTTATGTTA
CTGCAGCAGCCAAATCATCAGCACCAAGGAAACAACACTGCTGTAACCTC
CCACCTTATTCTTCCACCACCGATACAACCGCCGCCACCGCCGCCGCCCT
CACAACCCCATGGACTCGGTGCTACTGCCACTGCCGCCTCCATCAGGCCG
GGTTCCATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGC
TCCGCAGAAGTGTCCTAGATGTGAATCCACCAACACAAAGTTTTGCTACT
TCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGCAGA
AGGTACTGGACTCGCGGCGGGGCCTTGAGGAACGTCCCTGTTGGCGGCGG
CTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGTGGCAGCGCCAGGT
CCCCGGCAAACTCCGATCGCCAAACGGCGAGTGCTGGCTCCGCTTCCACG
ACCAGTGGCTCATCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGG
GGTGCCGCCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATC
ACCACCTCGGTGGTGGTGGTGGTGGTGGAGGAGAGATAGGGTTAAACTAT
GGCTTGAACTATGGCGCGATTTCAGGTCCAATGGGAGGAATAGGGGACTT
GAATTTCCATATTGGAAACGCTTTAAATGGTGGTGGTGGTGGTTCTGTGT
TGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTC
TTGTCTGGTTTGGAAGCTTCTTCGTCACACGGGTTGTACCCATTTGATGG
TGCTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTT
CTGGGGTGATGTCTCAGTTTGCTTCAGTCAAAATGGAAGATAATCATCAT
CAGGAGCTTGGTTTGCAGAGACAGTTCTTGGGGGTCAACAATAACCCTAA
TACGAATGAGCAATATTGGAGTGCTGGTGGTGGTGGTGGTGCCACTTCTG
CTTGGACTGATCTTTCTGCTTTCAGTTCTTCTTCCACTACCAGTAACCCC
CTATAGAATTTTCTGCACTCTTGTGAAGTTTCTGGCTTTTGGTTCTTCTG
TTTCCTTTCACAAAGTTTCAACCAATTCGGTTACAATTACCCCCACGTGA
AAAGCTTCGAGGATGGTTAAGTACTTTGCTTTCTTTTATGATCAAATCAA
AAACCCTAGGGATGTTAGTTTTTCTATTTCCCCCCACTTTTAATCTTTAT
ATGTTGTTATTTCTTCTTCCTTTTCTCTCTCTTTCTTAGGTTTAGGTTGT
TTTGTATGGGAAGGTTTTACTATATATGGTGAAATTATGAGTTCAAGAGA
ATGAATATTGCAGTCGATAATCAATCATGTCTGATAAAAAATTATGTCTG
ATACCAGTATCACTTGATTTCCTCGTATGTATCTATCGAAAATATGATCA
TTTTTCTAATGATGAAGAGTGTTGAATTAAGCAAGCTTTATCTTCACTTA
ATAAACGATTTGGAGGAAAATTTGTTGCAGTGATAATAGAAAA
back to top

Coding sequence (CDS) from alignment at Vu05:13742466..13744408-

>Vigun05g123600.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g123600.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g123600.1; organism=Vigna unguiculata; type=CDS; length=1104bp; location=Sequence derived from: Vu05:13742466..13744408- (Vigna unguiculata
ATGGTTTATACCTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCA
ACAGCAGCCAAATCATCAGCACCAAGGAAACAACACTGCTGTAACCTCCC
ACCTTATTCTTCCACCACCGATACAACCGCCGCCACCGCCGCCGCCCTCA
CAACCCCATGGACTCGGTGCTACTGCCACTGCCGCCTCCATCAGGCCGGG
TTCCATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTC
CGCAGAAGTGTCCTAGATGTGAATCCACCAACACAAAGTTTTGCTACTTC
AACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGCAGAAG
GTACTGGACTCGCGGCGGGGCCTTGAGGAACGTCCCTGTTGGCGGCGGCT
GCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGTGGCAGCGCCAGGTCC
CCGGCAAACTCCGATCGCCAAACGGCGAGTGCTGGCTCCGCTTCCACGAC
CAGTGGCTCATCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGGGG
TGCCGCCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCAC
CACCTCGGTGGTGGTGGTGGTGGTGGAGGAGAGATAGGGTTAAACTATGG
CTTGAACTATGGCGCGATTTCAGGTCCAATGGGAGGAATAGGGGACTTGA
ATTTCCATATTGGAAACGCTTTAAATGGTGGTGGTGGTGGTTCTGTGTTG
TCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTT
GTCTGGTTTGGAAGCTTCTTCGTCACACGGGTTGTACCCATTTGATGGTG
CTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCT
GGGGTGATGTCTCAGTTTGCTTCAGTCAAAATGGAAGATAATCATCATCA
GGAGCTTGGTTTGCAGAGACAGTTCTTGGGGGTCAACAATAACCCTAATA
CGAATGAGCAATATTGGAGTGCTGGTGGTGGTGGTGGTGCCACTTCTGCT
TGGACTGATCTTTCTGCTTTCAGTTCTTCTTCCACTACCAGTAACCCCCT
ATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding