Vigun05g204100.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun05g204100.1 vs. DB:Swiss
Match: UH1BL_MOUSE (UHRF1-binding protein 1-like OS=Mus musculus OX=10090 GN=Uhrf1bp1l PE=1 SV=2) HSP 1 Score: 59.3066 bits (142), Expect = 2.566e-7 Identity = 51/210 (24.29%), Postives = 101/210 (48.10%), Query Frame = 1 Query: 1 MESILGRALEYTLKYWLKSFSRDQFKL---QGRTVHLSNLDIDGDALHSSVGLPPALNVATAKVGKLEITLPSVSNVQTEPIVVHIDRLDLVLEENSDFDXXXXXXXXXXXXXXXKGSGYGFADKIADGMTIQIQTVNLLLETCGGSRRQGQGGATWAPPMASITIRNLLLYTTNENWQVVNLKEAREFSTNKKYIYVFKKLEWQSLSID 621
M I+ + + L + K+ S D+ L +G L NL++D + L + + LP L ++ K I +P + ++T+PI + +D+ V+ E S + + N + A +S S YGFA+K+ +G+T+ + ++ + + G + AS + L +Y+ N W+ +L+ R + + FK++ WQ + I+
Sbjct: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEG-ELKNLELDEEVLQNMLDLPTWLAISKVFCNKASIRIP-WTKLKTQPICLSLDK---VIMEMSTCEEPRAPNGPSPIATASGQSEYGFAEKVVEGITVSVNSIVIRI-----------GAKAFN---ASFELSQLRIYSVNAQWEHGDLRFTRIQDPQRGEVLTFKEINWQMIRIE 191 The following BLAST results are available for this feature:
BLAST of Vigun05g204100.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun05g204100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g204100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g204100.1; organism=Vigna unguiculata; type=mRNA; length=4149bpback to top protein sequence of Vigun05g204100.1_Vu_IT97K-499-35_v1.1 >Vigun05g204100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g204100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g204100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=1215bpback to top mRNA from alignment at Vu05:39251538..39260972+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun05g204100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g204100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g204100.1; organism=Vigna unguiculata; type=mRNA; length=9435bp; location=Sequence derived from: Vu05:39251538..39260972+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu05:39251538..39260972+ >Vigun05g204100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g204100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g204100.1; organism=Vigna unguiculata; type=CDS; length=3645bp; location=Sequence derived from: Vu05:39251538..39260972+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|