Vigun05g231400.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun05g231400.1 vs. DB:Swiss
Match: FAFL_ARATH (Protein FAF-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g22090 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 4.866e-27 Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 1 Query: 76 KQGIVTILG---SNNDSATSLRRTLSADMSSKKWLSQNGFXXXXXXXXXXXXXXXFTEPTVAXXXXXXXXXXXXXIKQNRCQIWEIIQKEENVDKSRE------FDIWSSVLSKKANEESSK-VIIPAYVHPLVRRSKSCLSEKSLQICTESLGSETGSDGF 531 +QGIV+ILG SN SA SLRRT SAD+SSK W+SQNGFSP+K+IS + +++ +EE ++ IW IQ+++N K E D+WSS+LS+K ESSK + P YVHPL++R+ S LSEKSL+ICTESLGSETG DGF Sbjct: 19 QQGIVSILGGISSNTSSAPSLRRTFSADLSSKTWVSQNGFSPMKRIS--------------SSEKLRPDEEEAEEESRSGVDIWAQIQQDKNDKKKEEEIEPGQSDVWSSILSEKKKTESSKDTVPPPYVHPLMKRASS-LSEKSLEICTESLGSETGCDGF 165 HSP 2 Score: 60.8474 bits (146), Expect = 9.363e-9 Identity = 25/36 (69.44%), Postives = 33/36 (91.67%), Query Frame = 1 Query: 700 HMRSHRDNGRLFIQAVSVPSQNNFSAERQNGRLVLT 807 HM++ RDNGRL ++AVS+PS NNFSA+RQ+GRL+LT Sbjct: 241 HMKTRRDNGRLVLEAVSMPSHNNFSAKRQDGRLLLT 276 The following BLAST results are available for this feature:
BLAST of Vigun05g231400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun05g231400.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g231400.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g231400.1; organism=Vigna unguiculata; type=mRNA; length=1748bpback to top protein sequence of Vigun05g231400.1_Vu_IT97K-499-35_v1.1 >Vigun05g231400.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g231400.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g231400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=422bpback to top mRNA from alignment at Vu05:42493871..42495765- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun05g231400.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g231400.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g231400.1; organism=Vigna unguiculata; type=mRNA; length=1895bp; location=Sequence derived from: Vu05:42493871..42495765- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu05:42493871..42495765- >Vigun05g231400.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g231400.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g231400.1; organism=Vigna unguiculata; type=CDS; length=1266bp; location=Sequence derived from: Vu05:42493871..42495765- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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