Vigun05g234300.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun05g234300.1 vs. DB:Swiss
Match: FB119_ARATH (F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 1.031e-81 Identity = 144/329 (43.77%), Postives = 207/329 (62.92%), Query Frame = 1
Query: 40 ITILHPDIIQSHILNRLDGPTLASASSATHHLRRLCTDHSLWRSICAATWPSLNQPHAAALIETFPAAHRSVFSDSFPSIQYSXXXXXXXXXXXXEFVSAVDLYYKGRPVFSRVITTETHK---GWFLSSPLWVDLLDPNEVVPTPLIFAKCDEESSWLAHLEENLGMSWIVIDPTRKRAANVSSRRPVAARRHWLTGDLEVLFA-VTMDTVQWVIRVTCCGKA----------GGAVHVREASLTMEDTEGRHVTGRDSFVILQDAMENGARRKPDPEE--AKARFDKFCXXXXXXXXXXXXXDSAMDMVAMLVSFTIFVSLFWFMVF 978
I+ LH DIIQ+ IL RLDGPTLAS ++ + +L+ LCT+ LW+ + TWPS+N P I +FP+ +RS F+DS+P +++ +SAVDLYY+G ++S+V ET K GWFLSSP VD+LDP E V T + + D E +W+ +EE++ ++WI+IDP +KRAAN+SSR+ V+ARR+WLTGDLE+ F+ V V V CG A GG +HVR+ L +ED EG+ + GRDS VILQ + +G R D EE AK R++++ R+K + RE K RR+ A D + M+ F++FV L+ F++
Sbjct: 12 ISTLHSDIIQTQILTRLDGPTLASTATTSSYLQTLCTEEKLWQELSIDTWPSINDPRVVQAISSFPSGYRSFFADSYPFTEHTWQSEKHDPPTG--LISAVDLYYRGEIIYSKVQEMETEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYE-AWVKDMEESMKLNWILIDPIKKRAANISSRKAVSARRNWLTGDLEIRFSTVVTAEAAEVAAVVSCGSAEAWKEVDEEVGGEIHVRDVRLQVEDIEGKCMKGRDSLVILQGLL-DGKRSCKDDEERRAKERYEEYVRMKIQWRENKERREKAQDTICMIFGFSMFVLLWSFILL 336
BLAST of Vigun05g234300.1 vs. DB:Swiss
Match: FB322_ARATH (Probable F-box protein At2g36090 OS=Arabidopsis thaliana OX=3702 GN=At2g36090 PE=2 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 4.128e-70 Identity = 136/314 (43.31%), Postives = 193/314 (61.46%), Query Frame = 1
Query: 40 ITILHPDIIQSHILNRLDGPTLASASSATHHLRRLCTDHSLWRSICAATWPSLNQPHAAALIETFPAAHRSVFSDSFPSIQYSXXXXXXXXXXXXEFVSAVDLYYKGRPVFSRVITTETHKGWFLSSPLWVDLLDPNEVVPTPLIFAKCDEESSWLAHLEENLGMSWIVIDPTRKRAANVSSRRPVAARRHWLTGDLEVLFAVTMDTVQWVIRVTCCGKAGGAVHVREASLTMEDTEGRHVTGRDSFVILQDAME----NGARRKPDPEEAKARFDKFCXXXXXXXXXXXXXDSAMDMVAMLVSFTIFVSLFWF 969
I+ +H DII+SHIL RLDG TLAS S A+ HL L ++ LW IC +TWPS + RS FSD++ ++ + R PE +SAVDL+Y+G+ +FSRV+ TET WF SSPL +DL+D + V TP+ + E++ LE++L +SWIVIDP KRAAN+SS RPV+ +R+W++G++E FA + V+ VI V CG+ +HVRE SL +E EG H+ GRDS VIL+ ME NG+RR+ E+K R ++F KRE++E+K+R +S D++ + FV L F
Sbjct: 17 ISTVHDDIIESHILTRLDGATLASVSCASSHLHHLASNEILWSKICRSTWPSCS------------GGSRSFFSDAYSMVE-TAGTVSDLDRPFPELISAVDLHYRGKLIFSRVVKTETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTEDT--CRDLEKDLTLSWIVIDPIGKRAANISSHRPVSVQRNWISGEVEAQFATVVGAVECVITVVTCGEE--EMHVREVSLKVEKMEGTHLNGRDSLVILRSVMEGKRVNGSRREV---ESKKRHEEFMEKKREMKEKKMRVESVFDILTVAFGILGFVLLVVF 310
BLAST of Vigun05g234300.1 vs. DB:Swiss
Match: FB346_ARATH (F-box protein At3g44326 OS=Arabidopsis thaliana OX=3702 GN=At3g44326 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 1.884e-69 Identity = 125/329 (37.99%), Postives = 191/329 (58.05%), Query Frame = 1
Query: 40 ITILHPDIIQSHILNRLDGPTLASASSATHHLRRLCTDHSLWRSICAATWPSLNQPHAAALIETFPAAHRSVFSDSFPSIQYSXXXXXXXXXXXXEFVSAVDLYYKGRPVFSRVITTETHKGWFLSSPLWVDLLDPNEVVPTPLIFAKCDEESSWLAHLEENLGMSWIVIDPTRKRAANVSSRRPVAARRHWLTGDLEVLFAVTM--------DTVQWVIRVTCC-----GKAGGAVHVREASLTMEDTEGRHVTGRDSFVILQDAMENGAR-RKPDPEEAKARFDKFCXXXXXXXXXX--XXXDSAMDMVAMLVSFTIFVSLFWFMVF 978
I + D+++S+IL RLDG +LA+ S +L C+D SLWR C+ATWPS + ++I TFP HR+ FSDSFP +++ + P+ E +SAVD++YK +FSRV TET GWFL SP+ VDL++P E++PT ++ ++ +W + LEENL +SWI+IDPT KRAA+VS+R+PV+ RHWLTG++ V F+ + V++ + V + + +RE SL ED +GR++ G+ S IL AM R R EE K ++ ++ K E K +++AM+ A ++ + L F +F
Sbjct: 21 INAVSSDVLRSNILTRLDGSSLAALSCTCSNLNSFCSDESLWRQQCSATWPSTSDTRVQSIISTFPDGHRTFFSDSFPFLEHDVGINLPPSVDTSELISAVDIFYKDDVIFSRVHVTETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEENLSLSWILIDPTCKRAADVSTRKPVSVHRHWLTGEVHVKFSSIFVVGNKKRSEQVEFTVTVVLAVFNRREEETAVMQIREVSLVAEDKDGRNLGGKVSLEILVAAMGMKRRFRAGGEEEGKEKYIEYMERKTAKAEMKWRRGKETAMETAACWIAVLLLGFLLCFYLF 349 The following BLAST results are available for this feature:
BLAST of Vigun05g234300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 3
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun05g234300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g234300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g234300.1; organism=Vigna unguiculata; type=mRNA; length=1795bpback to top protein sequence of Vigun05g234300.1_Vu_IT97K-499-35_v1.1 >Vigun05g234300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g234300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g234300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=329bpback to top mRNA from alignment at Vu05:42797267..42799255- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun05g234300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g234300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g234300.1; organism=Vigna unguiculata; type=mRNA; length=1989bp; location=Sequence derived from: Vu05:42797267..42799255- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu05:42797267..42799255- >Vigun05g234300.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g234300.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g234300.1; organism=Vigna unguiculata; type=CDS; length=987bp; location=Sequence derived from: Vu05:42797267..42799255- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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