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Transcript Overview
| Name | Vigun05g244100.1 |
|---|
| Unique Name | Vigun05g244100.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1228 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun05g244100.1 | Vigun05g244100.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun05g244100.1_Vu_IT97K-499-35_v1.1 | Vigun05g244100.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun05g244100.1.v1.1.CDS.2 | Vigun05g244100.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun05g244100.1.v1.1.CDS.1 | Vigun05g244100.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun05g244100.1.v1.1.three_prime_UTR.1 | Vigun05g244100.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun05g244100.1.v1.1.five_prime_UTR.1 | Vigun05g244100.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 38..79 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 192..218 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 92..121 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 107..121 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 192..215 |
| IPR012862 | Protein of unknown function DUF1635 | PFAM | PF07795 | DUF1635 | coord: 18..261
e-value: 3.2E-96
score: 321.5 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun05g244100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g244100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g244100.1; organism=Vigna unguiculata; type=mRNA; length=1228bp
GCTTTTACTGCTCCTTTTTTCTTCCCGGCACTACTACTATCCCTTTCCCT
TTCTCTTTTTCCCATCACACACACACACATACAATTGAAAATCAAAATAC
CACTGCCACTGCTACTAGGATTTTGCCTCTCTTTGCCTTTTGGCTTTTTA
TGTGCATTTCTTTTCTTCCCACAAAACCCAACAACAGTGACATCGACCAC
TTCTTATAAAACACCTTGTTCCTTCACACATAACACTCCTAACTCTCTCT
CTCCATTTTCCTTTCCTCTTTCAAAACGCAGATATTTATATAATTATCCA
AATTGGGAACCTGAGAGCATGGACAACCAGCGTAGCCCTCTTATAACTTG
GGCTTACTACTTCCAGGGAAAGTCAATGGAGGAGCTGAGACAGTCTGTGA
TATGCACAACGGTGGAGCTTGAACAGACCAGGGCTGCAGTGCAAGAAGAG
CTCAGAAAGAGAGATGAACAACTACTGAACCTAAAGGAACTGCTGAGCAA
AACCATGAGAGAGAGAGATGAAGCGCAGGAGAAATGCCGGAGACTGCTCT
TGGAGAAGATAGTTTTCCAACACCAACAACAAGCAGCTCCTGTGTCTGGG
ATTTCTAGCATTGAGGATGAGCCGAGAAGAGGAATTGACTCCAACAATGG
CCTCTCATCATCGGATTGTGAAGAGAGCATTGTTTCCTCTCCGGTCATTG
ACcatcatctctctcaacaacaacaacatcaacatcaacatcaaccccag
ttacaaccacaaTCCATGATTGAGCTAACACCAGACAAACCATTACCAGA
AAAGGGGAAGCTCTTGCAAGCAGTCATGAAAGCCGGTCCTCTCCTTCAGA
CCCTTCTCCTTGCAGGACCTCTTCCCCAATGGAGACACCCTCCCCCACCA
CTTGAGTCCTTTGAGATTCCCCCTGTcaccataccctcaccaccaccacc
acaatcacaatcacaaccacacctcctccaccaTGATTCCTTTCTTAACA
TTGACGGTAGCAGCACCACAGCCAACTGCGGAAGGGTTAGTCGGAAAAGG
GTTTTCTGTGATGGCTCTGATTCTCCCACCGAGACCAAGTACCAGAGGCT
TCTACTTCACTGACTTACTTCCCACAAGTCGGATTCACATATTTAGTTTC
TAATTtatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatttatatat back to topprotein sequence of Vigun05g244100.1_Vu_IT97K-499-35_v1.1 >Vigun05g244100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g244100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g244100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=265bp
MDNQRSPLITWAYYFQGKSMEELRQSVICTTVELEQTRAAVQEELRKRDE
QLLNLKELLSKTMRERDEAQEKCRRLLLEKIVFQHQQQAAPVSGISSIED
EPRRGIDSNNGLSSSDCEESIVSSPVIDHHLSQQQQHQHQHQPQLQPQSM
IELTPDKPLPEKGKLLQAVMKAGPLLQTLLLAGPLPQWRHPPPPLESFEI
PPVTIPSPPPPQSQSQPHLLHHDSFLNIDGSSTTANCGRVSRKRVFCDGS
DSPTETKYQRLLLH* back to topmRNA from alignment at Vu05:43717924..43719275- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun05g244100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g244100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g244100.1; organism=Vigna unguiculata; type=mRNA; length=1352bp; location=Sequence derived from: Vu05:43717924..43719275- (Vigna unguiculata
GCTTTTACTGCTCCTTTTTTCTTCCCGGCACTACTACTATCCCTTTCCCT
TTCTCTTTTTCCCATCACACACACACACATACAATTGAAAATCAAAATAC
CACTGCCACTGCTACTAGGATTTTGCCTCTCTTTGCCTTTTGGCTTTTTA
TGTGCATTTCTTTTCTTCCCACAAAACCCAACAACAGTGACATCGACCAC
TTCTTATAAAACACCTTGTTCCTTCACACATAACACTCCTAACTCTCTCT
CTCCATTTTCCTTTCCTCTTTCAAAACGCAGATATTTATATAATTATCCA
AATTGGGAACCTGAGAGCATGGACAACCAGCGTAGCCCTCTTATAACTTG
GGCTTACTACTTCCAGGGAAAGGTACCTACTTTCTTTTACCCTTTAACTA
TACACACTTCAATGTATCATCAGCCTTAAAACAAGTTAATGGGGGCTCAT
AATTGTTTGAATTTCAGCACTAATTTTCCCTGTTGTTTGTGTACAGTCAA
TGGAGGAGCTGAGACAGTCTGTGATATGCACAACGGTGGAGCTTGAACAG
ACCAGGGCTGCAGTGCAAGAAGAGCTCAGAAAGAGAGATGAACAACTACT
GAACCTAAAGGAACTGCTGAGCAAAACCATGAGAGAGAGAGATGAAGCGC
AGGAGAAATGCCGGAGACTGCTCTTGGAGAAGATAGTTTTCCAACACCAA
CAACAAGCAGCTCCTGTGTCTGGGATTTCTAGCATTGAGGATGAGCCGAG
AAGAGGAATTGACTCCAACAATGGCCTCTCATCATCGGATTGTGAAGAGA
GCATTGTTTCCTCTCCGGTCATTGACCATCATCTCTCTCAACAACAACAA
CATCAACATCAACATCAACCCCAGTTACAACCACAATCCATGATTGAGCT
AACACCAGACAAACCATTACCAGAAAAGGGGAAGCTCTTGCAAGCAGTCA
TGAAAGCCGGTCCTCTCCTTCAGACCCTTCTCCTTGCAGGACCTCTTCCC
CAATGGAGACACCCTCCCCCACCACTTGAGTCCTTTGAGATTCCCCCTGT
CACCATACCCTCACCACCACCACCACAATCACAATCACAACCACACCTCC
TCCACCATGATTCCTTTCTTAACATTGACGGTAGCAGCACCACAGCCAAC
TGCGGAAGGGTTAGTCGGAAAAGGGTTTTCTGTGATGGCTCTGATTCTCC
CACCGAGACCAAGTACCAGAGGCTTCTACTTCACTGACTTACTTCCCACA
AGTCGGATTCACATATTTAGTTTCTAATTTATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATTTATAT
AT back to topCoding sequence (CDS) from alignment at Vu05:43717924..43719275- >Vigun05g244100.1_Vu_IT97K-499-35_v1.1 ID=Vigun05g244100.1_Vu_IT97K-499-35_v1.1; Name=Vigun05g244100.1; organism=Vigna unguiculata; type=CDS; length=795bp; location=Sequence derived from: Vu05:43717924..43719275- (Vigna unguiculata
ATGGACAACCAGCGTAGCCCTCTTATAACTTGGGCTTACTACTTCCAGGG
AAAGTCAATGGAGGAGCTGAGACAGTCTGTGATATGCACAACGGTGGAGC
TTGAACAGACCAGGGCTGCAGTGCAAGAAGAGCTCAGAAAGAGAGATGAA
CAACTACTGAACCTAAAGGAACTGCTGAGCAAAACCATGAGAGAGAGAGA
TGAAGCGCAGGAGAAATGCCGGAGACTGCTCTTGGAGAAGATAGTTTTCC
AACACCAACAACAAGCAGCTCCTGTGTCTGGGATTTCTAGCATTGAGGAT
GAGCCGAGAAGAGGAATTGACTCCAACAATGGCCTCTCATCATCGGATTG
TGAAGAGAGCATTGTTTCCTCTCCGGTCATTGACCATCATCTCTCTCAAC
AACAACAACATCAACATCAACATCAACCCCAGTTACAACCACAATCCATG
ATTGAGCTAACACCAGACAAACCATTACCAGAAAAGGGGAAGCTCTTGCA
AGCAGTCATGAAAGCCGGTCCTCTCCTTCAGACCCTTCTCCTTGCAGGAC
CTCTTCCCCAATGGAGACACCCTCCCCCACCACTTGAGTCCTTTGAGATT
CCCCCTGTCACCATACCCTCACCACCACCACCACAATCACAATCACAACC
ACACCTCCTCCACCATGATTCCTTTCTTAACATTGACGGTAGCAGCACCA
CAGCCAACTGCGGAAGGGTTAGTCGGAAAAGGGTTTTCTGTGATGGCTCT
GATTCTCCCACCGAGACCAAGTACCAGAGGCTTCTACTTCACTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR012862 | DUF1635 |
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