Vigun07g064100.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: PABP7_ARATH (Polyadenylate-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=PAB7 PE=2 SV=1) HSP 1 Score: 525.398 bits (1352), Expect = 0.000e+0 Identity = 254/431 (58.93%), Postives = 335/431 (77.73%), Query Frame = 1 Query: 34 SSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDRILPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQ-QARLNGSPATVIPPGFTPYFYPNVTSHVFQSGLLYQPLGLGSGWRANDFTPPTRP 1323 +SLYVGDLHP +T+ L+ AF EF+SL+SVR+C+D+ + SL YGY NF+S+QDAN AI+ KNNS L GK+IRVMWS R P+ R++G GNVFVKNL ES+ NAVL D+F+K+GN++S KV +DGKS+GYGFVQFE E++A++AI+ LN + V DK+IYVGKF++K DR+ P + KYTNLY+KNLD+D++E LLREKF+ FGKI+SLAIAKD+N L +G+AFVN+D+P+DAR+A ET+NG++FGSK LYV RAQKKAEREQLL QF+EK +EQ +K SN+YVKN++ AV E+ELR FS CGTITS K+M +EKG SKGFGFVCFS PEEAI A+ TF+G MF+GKPLY+A AQ+KEDRK QL++ + + +AR + S A+V P + P +Y N G++YQ L W++ + + P Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP--EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNT-----HPGMVYQSYPL--MWKSANMIGSSYP 445
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PAB2 PE=1 SV=1) HSP 1 Score: 409.453 bits (1051), Expect = 6.503e-136 Identity = 202/389 (51.93%), Postives = 272/389 (69.92%), Query Frame = 1 Query: 4 AVPATVAAA------QSSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDRILPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYA 1152 + PAT A +SLYVGDL ++TD+QLF AF + ++ +VRVCRD +TR SL YGYVNF + QDA RAI+ N L+GK IRVM+SHRDP+ R+SG GN+F+KNL ESID+ LHD F +GN++S KV V G+SKGYGFVQ+ +EESA AIEKLNG + DKQ+YVG F+R+ +R +K+TN+Y+KNL T+ L+ F +GKI S + KD G SKGF FVN+++ DDA +A+E++NG +F K YV RAQKK+ERE L ++E+ KE K + SNLYVKN+D ++ +++L+++FS GT+TS KVMR+ G SKG GFV F+ PEEA +AMS G M KPLY+A AQRKEDR+ +L+ ++ Sbjct: 20 SAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFS 408
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: PABP8_ARATH (Polyadenylate-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=PAB8 PE=1 SV=1) HSP 1 Score: 395.971 bits (1016), Expect = 4.723e-130 Identity = 204/421 (48.46%), Postives = 278/421 (66.03%), Query Frame = 1 Query: 34 SSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDRILPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSPAT-----VIPPGFTP-----YFYPNVTSHVFQSGLLYQ 1266 +SLYVGDL +TD+QLF+AF + + SVRVCRD TR SL YGYVN+ + QDA+RA+ N L G+ IRVM+S RDP+ RKSG GN+F+KNL +SID+ LH+ F +G +LS KV V G+SKGYGFVQ++++E+A AI+KLNG + DKQ+YVG FV K R G K+TN+Y+KNL +++ L + F FG S I +D G SKGF FVN+++ DDA +A++ +NG F K +V +AQKK+ERE L +FE+ KE KS+GSNLYVKN+D++V + +LR+ F+ GTITS KVMR+ G+S+G GFV FS PEEA +A++ G M KPLY+A AQRKEDRK +L+ ++ Q +N PA + PPG P ++ + + Q G YQ Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFS-QMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIPQPGFGYQ 464
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens OX=9606 GN=PABPC4 PE=1 SV=1) HSP 1 Score: 389.423 bits (999), Expect = 6.959e-128 Identity = 198/405 (48.89%), Postives = 271/405 (66.91%), Query Frame = 1 Query: 34 SSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDRI--LPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSPATVIPPGFTP----YFYPNV 1230 +SLYVGDLH D+T+ L++ F + S+RVCRD +TR SL Y YVNF DA RA+ N + GK IR+MWS RDP+ RKSG GNVF+KNL +SIDN L+D F +GN+LS KVV ++G SKGY FV FE++E+A+ AIEK+NG + D++++VG+F + +R L ++TN+YIKN ++ + L+E FS FGK +S+ + +D NG SKGF FV+Y+ +DA KA+E MNG + K ++V RAQKK ER+ L +FE+ ++E+I + +G NLY+KN+DD + +++LR FS G+ITS KVM E G SKGFGFVCFS+PEEA KA++ G + KPLY+A AQRKE+RK L Y + A + PA I F P YF P V Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAV 413
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN=Pabpc1 PE=1 SV=2) HSP 1 Score: 388.267 bits (996), Expect = 1.751e-127 Identity = 191/399 (47.87%), Postives = 268/399 (67.17%), Query Frame = 1 Query: 10 PATVAAAQSSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDR--ILPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSPATVIPP 1200 P+ + +SLYVGDLHPD+T+ L++ F + S+RVCRD +TR SL Y YVNF DA RA+ N + GK +R+MWS RDP+ RKSG GN+F+KNL +SIDN L+D F +GN+LS KVV ++G SKGYGFV FE++E+A AIEK+NG + D++++VG+F + +R L ++TN+YIKN D+ + L+E F FG +S+ + D++G SKGF FV+++ +DA+KA++ MNG + K +YV RAQKK ER+ L +FE+ ++++I + +G NLYVKN+DD + ++ LR FS GTITS KVM E G SKGFGFVCFS+PEEA KA++ G + KPLY+A AQRKE+R+ L Y + A + P VI P Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 388.267 bits (996), Expect = 1.888e-127 Identity = 191/399 (47.87%), Postives = 268/399 (67.17%), Query Frame = 1 Query: 10 PATVAAAQSSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDR--ILPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSPATVIPP 1200 P+ + +SLYVGDLHPD+T+ L++ F + S+RVCRD +TR SL Y YVNF DA RA+ N + GK +R+MWS RDP+ RKSG GN+F+KNL +SIDN L+D F +GN+LS KVV ++G SKGYGFV FE++E+A AIEK+NG + D++++VG+F + +R L ++TN+YIKN D+ + L+E F FG +S+ + D++G SKGF FV+++ +DA+KA++ MNG + K +YV RAQKK ER+ L +FE+ ++++I + +G NLYVKN+DD + ++ LR FS GTITS KVM E G SKGFGFVCFS+PEEA KA++ G + KPLY+A AQRKE+R+ L Y + A + P VI P Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis OX=8364 GN=epabp PE=2 SV=1) HSP 1 Score: 386.341 bits (991), Expect = 6.540e-127 Identity = 203/441 (46.03%), Postives = 278/441 (63.04%), Query Frame = 1 Query: 34 SSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDRILPGYDSK---YTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSPATVIPPGFTP--YFYPNV---TSHVFQSGLLYQPLGLGSGWRANDFTPPTRPFQP 1332 +SLYVGDLHPD+T+ L++ F + S+RVCRD TR SL Y Y+NF DA RA+ N + G+ IR+MWS RDP RKSG GNVF+KNL ESIDN L+D F +GN+LS KVV D+ S+GYGFV FE++E+AN AI+ +NG + D++++VG F + +R L Y +K +TN+YIKN D+ + LRE FS FG +S+ + DD G S+GF FVNY + ++A+KA+ MNG + + +YV RAQK+ ER+ L +FE+ ++E+I + +G NLYVKN+DD + + LR FS GTITS KVM E G SKGFGFVCFS+PEEA KA++ G + KPLY+A AQRKE+RK L Y + A + P ++ P YF P + + F S P+ W ++ PP +QP Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC-DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL-EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPNPVAPVRQAPQWTSHQSRPPQ--YQP 446
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens OX=9606 GN=PABPC1 PE=1 SV=2) HSP 1 Score: 386.726 bits (992), Expect = 6.663e-127 Identity = 190/399 (47.62%), Postives = 268/399 (67.17%), Query Frame = 1 Query: 10 PATVAAAQSSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDR--ILPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSPATVIPP 1200 P+ + +SLYVGDLHPD+T+ L++ F + S+RVCRD +TR SL Y YVNF DA RA+ N + GK +R+MWS RDP+ RKSG GN+F+KNL +SIDN L+D F +GN+LS KVV ++G SKGYGFV FE++E+A AIEK+NG + D++++VG+F + +R L ++TN+YIKN D+ + L++ F FG +S+ + D++G SKGF FV+++ +DA+KA++ MNG + K +YV RAQKK ER+ L +FE+ ++++I + +G NLYVKN+DD + ++ LR FS GTITS KVM E G SKGFGFVCFS+PEEA KA++ G + KPLY+A AQRKE+R+ L Y + A + P VI P Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus OX=9913 GN=PABPC1 PE=2 SV=1) HSP 1 Score: 386.726 bits (992), Expect = 6.663e-127 Identity = 190/399 (47.62%), Postives = 268/399 (67.17%), Query Frame = 1 Query: 10 PATVAAAQSSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDR--ILPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSPATVIPP 1200 P+ + +SLYVGDLHPD+T+ L++ F + S+RVCRD +TR SL Y YVNF DA RA+ N + GK +R+MWS RDP+ RKSG GN+F+KNL +SIDN L+D F +GN+LS KVV ++G SKGYGFV FE++E+A AIEK+NG + D++++VG+F + +R L ++TN+YIKN D+ + L++ F FG +S+ + D++G SKGF FV+++ +DA+KA++ MNG + K +YV RAQKK ER+ L +FE+ ++++I + +G NLYVKN+DD + ++ LR FS GTITS KVM E G SKGFGFVCFS+PEEA KA++ G + KPLY+A AQRKE+R+ L Y + A + P VI P Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399
BLAST of Vigun07g064100.1 vs. DB:Swiss
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii OX=9601 GN=PABPC1 PE=2 SV=1) HSP 1 Score: 385.185 bits (988), Expect = 2.947e-126 Identity = 190/399 (47.62%), Postives = 267/399 (66.92%), Query Frame = 1 Query: 10 PATVAAAQSSLYVGDLHPDITDTQLFQAFREFESLSSVRVCRDSMTRASLRYGYVNFMSQQDANRAIKVKNNSYLFGKVIRVMWSHRDPNGRKSGRGNVFVKNLAESIDNAVLHDLFQKYGNVLSSKVVVYDDGKSKGYGFVQFESEESANSAIEKLNGSTVRDKQIYVGKFVRKGDR--ILPGYDSKYTNLYIKNLDSDITEALLREKFSTFGKIISLAIAKDDNGLSKGFAFVNYDSPDDARKAMETMNGSQFGSKNLYVSRAQKKAEREQLLHNQFEEKRKEQIQKSKGSNLYVKNIDDAVGEKELRDLFSSCGTITSVKVMRNEKGISKGFGFVCFSNPEEAIKAMSTFYGCMFYGKPLYIAFAQRKEDRKTQLKLHYAPQQARLNGSPATVIPP 1200 P+ + +SLYVGDLHPD T+ L++ F + S+RVCRD +TR SL Y YVNF DA RA+ N + GK +R+MWS RDP+ RKSG GN+F+KNL +SIDN L+D F +GN+LS KVV ++G SKGYGFV FE++E+A AIEK+NG + D++++VG+F + +R L ++TN+YIKN D+ + L++ F FG +S+ + D++G SKGF FV+++ +DA+KA++ MNG + K +YV RAQKK ER+ L +FE+ ++++I + +G NLYVKN+DD + ++ LR FS GTITS KVM E G SKGFGFVCFS+PEEA KA++ G + KPLY+A AQRKE+R+ L Y + A + P VI P Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINP 399 The following BLAST results are available for this feature:
BLAST of Vigun07g064100.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun07g064100.1_Vu_IT97K-499-35_v1.1 ID=Vigun07g064100.1_Vu_IT97K-499-35_v1.1; Name=Vigun07g064100.1; organism=Vigna unguiculata; type=mRNA; length=1989bpback to top protein sequence of Vigun07g064100.1_Vu_IT97K-499-35_v1.1 >Vigun07g064100.1_Vu_IT97K-499-35_v1.1 ID=Vigun07g064100.1_Vu_IT97K-499-35_v1.1; Name=Vigun07g064100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=499bpback to top mRNA from alignment at Vu07:7428798..7433140+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun07g064100.1_Vu_IT97K-499-35_v1.1 ID=Vigun07g064100.1_Vu_IT97K-499-35_v1.1; Name=Vigun07g064100.1; organism=Vigna unguiculata; type=mRNA; length=4343bp; location=Sequence derived from: Vu07:7428798..7433140+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu07:7428798..7433140+ >Vigun07g064100.1_Vu_IT97K-499-35_v1.1 ID=Vigun07g064100.1_Vu_IT97K-499-35_v1.1; Name=Vigun07g064100.1; organism=Vigna unguiculata; type=CDS; length=1497bp; location=Sequence derived from: Vu07:7428798..7433140+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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