Transcript Overview
Name Vigun08g016900.1 Unique Name Vigun08g016900.1_Vu_IT97K-499-35_v1.1 Type mRNA Organism Vigna unguiculata (cowpea) Sequence length 2486
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun08g016900.1 Vigun08g016900.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun08g016900.1_Vu_IT97K-499-35_v1.1 Vigun08g016900.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun08g016900.1.v1.1.five_prime_UTR.1 Vigun08g016900.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun08g016900.1.v1.1.CDS.1 Vigun08g016900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun08g016900.1.v1.1.three_prime_UTR.1 Vigun08g016900.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun08g016900.1 vs. DB:Swiss
Match:
Y1514_ARATH (Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana OX=3702 GN=At1g75140 PE=1 SV=3)
HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0
Identity = 348/600 (58.00%), Postives = 429/600 (71.50%), Query Frame = 1
Query: 178 QQVLLDKLEELVRNLSDLVARLESKLPDPPQEKGRLPHQRKXXXXXXXXTISSSKQDGEFEGKIRDGERAKGMSVTKYTPFWSERFQFASAVKLDSEVTCINVLPFRDHEGLSKYVAVSDERGRVYVFLRNGDVLVEFDTLVKSSITAMISYTSVYKNESFVVTGHENGEILLHRVWEGGSTGEDYSSLFMENVGKFVSPENREEGRPVTLLEVHYVGRMKYILSADTSGKIKVFKENGSLYGSVMASSRPLAFLKQRLMFLTETGAGSLDLRGMKIRESECEGLNHSVARTYVFDAMERSKAYGFTSDGEMIYVLLLGDVMNFKCRVRYKKKFDMDEPLALQAIKGYLLIVNPEKVFVYNVSSPHYVRVGVPRLVFSPSLDELRSSFL----NSPIPGLDAETKVIPLIGTDREKXXXXXXXXXXXXMYHSNLPIFKGEFNTMLWTSPVLFFVLFLFGAWHFFAKKKEALTSWGPDDPFTSTSATTNAPLASASADRSYGDSSSRSTEVMDLRGGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNARPASVDPDFR-GASELKYR-ATTMDPPGFPKRREGMFVPNQVVNERS 1959
Q V L +LEELVRNL++LVARL++KL + P + E E E+AK SVTKY+PFWSERF+F SAVKLDSE TCINVLPFRDHEGLSKY AV D GRV+VFLRNGDVLVEF T S ITAM+SY SVYKNESFVVTGH++G ILLHR+ E GS GED +S MENVGKF + E+G VTLLEVH+VGR++YIL+ D SGK+ VF EN ++YGSV +SRPL FLKQRL+FLTETGAGSLDLR MKIRESECEGLNHS+AR+YVFDA ER+KAYGFTS+GE+I+VLLLGD+MNFKCRVR KKK M+EP+ALQAIKGYLLIVN EKVFVYNVS+ HYVR PRL+F +L+++RS+FL ++ KV PLI +DREKL+++GLG GYV Y S LPI K EFNTMLW+SPV FF+LFLFGAWHFF+KKKE+LT+WGPDDPF+ST+ ++++ +A ++ +S+ R+ + MDLR AA +YR S+D ++R ++R A E+KYR + +D GF KRRE +F N+ +++ S
Sbjct: 58 QGVSLHRLEELVRNLTELVARLDAKLSETP------------------FKVKKEITRDEIE------EKAKAFSVTKYSPFWSERFEFTSAVKLDSEATCINVLPFRDHEGLSKYFAVGDSSGRVFVFLRNGDVLVEFFTTCDSPITAMVSYMSVYKNESFVVTGHQSGVILLHRLRE-GSIGEDLNSAVMENVGKF---DGTEDGLQVTLLEVHHVGRVRYILATDLSGKLTVFTENRTVYGSVSPTSRPLVFLKQRLLFLTETGAGSLDLRSMKIRESECEGLNHSLARSYVFDASERAKAYGFTSEGEIIHVLLLGDIMNFKCRVRSKKKVQMEEPVALQAIKGYLLIVNQEKVFVYNVSTQHYVRTTGPRLLFPAALEDIRSTFLSHRESTKTTDHQKLEKVTPLIASDREKLLVMGLGDGYVATYKSKLPISKAEFNTMLWSSPVFFFILFLFGAWHFFSKKKESLTAWGPDDPFSSTTMSSSS-TTTAQNSSAFSESTRRNDDHMDLR-----------RRYVSPSRYPPGAATGAYRSVGSNDPSSRAPVETTNYRTTAQEMKYRGGSGLDSGGFGKRRESLFGNNKALDDES 617
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Score = Score = Score = Score = Score = Score = Score = Expect = 3.1E-5 / Score = 25.2 Score = Sequence Coil mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite G3DSA:2.130.10.10 SSF50978
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 64..84 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 31..56 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 85..104 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 538..565 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 538..586 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 81..125 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 627..653 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GENE3D 2.130.10.10 coord: 135..317 IPR036322 WD40-repeat-containing domain superfamily SUPERFAMILY 50978 WD40 repeat-like coord: 152..297
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun08g016900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g016900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g016900.1; organism=Vigna unguiculata; type=mRNA; length=2486bp back to top protein sequence of Vigun08g016900.1_Vu_IT97K-499-35_v1.1
>Vigun08g016900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g016900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g016900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=654bp back to top mRNA from alignment at Vu08:1424174..1426659+
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g016900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g016900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g016900.1; organism=Vigna unguiculata; type=mRNA; length=2486bp; location=Sequence derived from: Vu08:1424174..1426659+ (Vigna unguiculataGGATTATCTGATGCAGATATGGTCCAAACAAAGCTATATCTGACCAGATC
ATATATCCTCAGTTACAGAACATTTGAACTGATCTCAATTTAGTTTTTTG
TCTTGTTTTCTGTTACTTAATTCACATGTTAGCCCTAATTCAACCTCAGT
CAATACACTGTCCTGTATCTTACATGGATATCTGCTAAATTTCCTATTAC
CAGATCCATCAACTTCCAAGACACACCCTCCAATTTTCTTCCTCAAAATC
A ATGGCGTATTTGGAAAAAGGCAAGTTTTTTATCTTCCTTTTGCTCTTCT
TTTCCTTTTCTCTTCATGTTTCCAGCACCCCTTTAGACCACAAATCATGT
TCAGTAGAATCGAAGCTGGACCCCGATTCATGTCAGGAACCTGTTCCTGA
ACCGCCCCAAACAACTAATCATTTGAATCAGCAAGTTTTGTTGGATAAAC
TTGAAGAATTAGTGAGAAATCTCAGTGATTTAGTTGCAAGGTTAGAATCA
AAGCTACCTGACCCTCCTCAAGAAAAGGGTAGGTTACCTCATCAAAGAAA
GGGTGGTGATGATGGTGATGGTGGTACAATATCAAGTAGTAAACAAGATG
GGGAATTTGAGGGAAAAATCCGAGATGGAGAGAGAGCAAAGGGAATGTCT
GTAACAAAGTACACACCTTTTTGGTCTGAGAGGTTCCAATTTGCATCTGC
TGTGAAGTTGGATTCTGAGGTCACTTGTATAAATGTTTTGCCTTTTAGGG
ATCACGAGGGGCTGAGTAAGTATGTGGCAGTTAGTGATGAGAGGGGAAGA
GTGTATGTGTTCTTGAGGAATGGTGATGTGTTGGTTGAGTTTGATACCTT
GGTGAAGTCCTCTATTACTGCAATGATTTCTTATACTTCGGTTTACAAGA
ATGAGAGTTTTGTAGTAACTGGTCATGAAAATGGAGAAATTTTGTTGCAC
AGGGTTTGGGAGGGAGGGTCTACTGGAGAGGATTATAGTTCTCTTTTCAT
GGAGAATGTTGGTAAGTTTGTGTCACCTGAAAACCGTGAAGAAGGAAGGC
CAGTGACTCTCTTGGAAGTTCATTATGTGGGGAGAATGAAGTACATTCTG
TCTGCTGATACAAGTGGGAAGATCAAGGTTTTTAAGGAAAACGGTTCCTT
GTATGGTTCTGTCATGGCTTCTAGCAGGCCACTGGCTTTCTTGAAGCAAA
GGCTTATGTTCTTGACAGAAACCGGTGCAGGTTCATTGGATCTAAGGGGT
ATGAAAATCAGGGAATCTGAGTGTGAAGGGTTGAACCATTCTGTTGCTAG
AACATATGTTTTTGATGCCATGGAGCGATCCAAAGCCTATGGCTTTACCT
CAGATGGGGAAATGATTTATGTGTTGTTGCTTGGAGATGTGATGAACTTC
AAATGCAGGGTGAGATACAAGAAAAAGTTTGACATGGATGAGCCTCTCGC
ACTGCAAGCAATCAAAGGGTATCTTCTGATTGTTAACCCTGAGAAGGTTT
TTGTGTACAATGTTTCATCTCCACACTATGTGAGAGTTGGTGTGCCAAGG
CTTGTTTTCTCCCCAAGTCTTGATGAACTGAGATCATCATTCTTGAACAG
TCCAATCCCGGGTTTGGATGCTGAAACAAAAGTGATACCTTTGATAGGCA
CTGACAGGGAAAAACTTGTGATTGTTGGGCTTGGAGGTGGGTATGTTGGG
ATGTATCATTCAAATCTACCTATCTTCAAAGGGGAATTCAACACCATGCT
ATGGACTAGTCCTGTGTTGTTCTTTGTGCTTTTCTTGTTTGGTGCTTGGC
ACTTTTTTGCCAAGAAGAAAGAAGCACTTACATCATGGGGACCAGATGAC
CCTTTCACTTCCACTTCAGCTACCACCAATGCACCTTTGGCATCTGCATC
TGCAGATAGATCTTATGGAGATTCTAGCTCAAGAAGCACTGAAGTCATGG
ATCTTAGAGGTGGAGCTCTCAGAGCTCCTCCAAGAAGGTATGGTTCTCCT
TCAAGGTATCCTGGTGCTGCTGCTGCTGCTGCTGCAAGTTCTTATAGACT
TGGTGCTTCCTCAGATCACAATGCTAGACCAGCCTCGGTTGATCCAGATT
TTCGTGGAGCTTCTGAGCTGAAATATAGGGCCACCACCATGGATCCTCCG
GGTTTTCCCAAGAGAAGAGAGGGCATGTTTGTACCAAACCAAGTTGTAAA
TGAGCGCAGTTGA GTGGGAGAGTTAATTGCATGAGCTTTTTTTTTTCTAA
CCAGTTTCAACTTTCCTTACCTTAGCTTTAAATCTTATCAGATCCTTCAG
CATCACTCTGCTATTTGGTTTGCTGCTTCCTTTTTTAACTTTCAAGTTGT
TGCACAAAAGAGGGAAATAAATTATATTGAGAAACTTGCTCGTCCTTTTT
ACTCCCATTCCCACTCCGGATTCTCTGTAAGGTTTTTCTGTATTATTTCT
CTACTGTGTTTGCAAAATACACTGATTTTGATGTTT back to top Coding sequence (CDS) from alignment at Vu08:1424174..1426659+
>Vigun08g016900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g016900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g016900.1; organism=Vigna unguiculata; type=CDS; length=1962bp; location=Sequence derived from: Vu08:1424174..1426659+ (Vigna unguiculata back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR015943 WD40/YVTN_repeat-like_dom_sf IPR036322 WD40_repeat_dom_sf
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
