Vigun08g019900.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: REM16_ARATH (B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 9.790e-45 Identity = 75/140 (53.57%), Postives = 96/140 (68.57%), Query Frame = 1 Query: 10 QNCNGCRSWEEDIYWSHFQFQHFVQFLRTGYDQHLALPKTFSDNLKKKPPANVALKGPSGVTWNVAMVTRGD-TLYLACGWEQFVKDHCLKENDFLVFKYNGESQFDVLVFDGGSLCEKACSYFVRKCGHKE---AEHVG 417
+NC C WEE++YW+HFQ HF Q L G+ L +P+ FS + K+K P V LK PSGVT+NV + + T+ GW++FVKDH L+END LVFK++G S+F+VLVFDG +LCEK SYFVRKCGH E A H G
Sbjct: 3 ENCEDCMKWEEELYWTHFQTLHFTQLLLPGFHNRLVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEENDLLVFKFHGVSEFEVLVFDGQTLCEKPTSYFVRKCGHAEKTKASHTG 142 HSP 2 Score: 98.5969 bits (244), Expect = 1.508e-21 Identity = 50/147 (34.01%), Postives = 84/147 (57.14%), Query Frame = 1 Query: 796 EAAEPVSAVRSAAQEVYISNRRPVTDDEI------KNALALAQASRTDDSLVVVMRPSHVYKRFFVSMPNKWIGEHIAPMSQDVILRTEKGEWVARYSYHNIRHTGGLTGGWKHFVLDNNLEEYDVCVFKPAGQMNESLVLGMTIFR 1218
E P+S + +E+ N D E+ K AL+LA+ + + D +V M+ SHV + F+++P KW +++ Q+V+++ ++ +W +++ R +GG++ GWK FV DNNL E DVCVF+PA + L L + IFR
Sbjct: 173 EGKYPLSGFKKMRRELSNDNLDQKADVEMISAGSNKKALSLAKRAISPDGFLVFMKRSHVVSKCFLTIPYKWCVKNMLITRQEVVMQVDQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFR 319
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: Y1176_ORYSJ (B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0197600 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 6.025e-30 Identity = 93/380 (24.47%), Postives = 175/380 (46.05%), Query Frame = 1 Query: 106 QHLALPKTFSDNLKKKPPANVALKGPSGVTWNVAMVTRGDTLYLACGWEQFVKDHCLKENDFLVFKYNGESQFDVLVFDGGSLCEKACSYFVRKCGHKEAEHVGGSLNKKRDTTEDPMKEGHIPLKAGVECASPGKSVHANGTKEPINVPFETPTPSEEAFNADVESAGAEQVTSVGVPLSAVPSETANGKRIRKLASVVKHVQTKRRGRGRPAKVSHVVDRALDWVSGLEAAEPVSAVRSAAQEVYISNRRPVTDDEIKNALALAQASRTDDSLVV-VMRPSHVYKRFFVSMPNKWIGEHIAPMSQDVILRTEKGE-WVARYSYHNIRHTGGLTGGWKHFVLDNNLEEYDVCVFKPAGQMNESLVLGMTIFRVVEEIVP 1239
+ + +P +F+ L+ +P V+L SG W+ + + + + GW++FV+D+ ++ FLVF Y+ SQF V VF+ + +K ++ + H ++ K ++ E M I + + T++ + + +++ A+V + + S V S + N R +S + +K S + ++SG + + Q IS RRPVT+ E +AL A+ ++ + V +M S+VY FF+++P +++ E + ++ + L +G+ W Y Y++ R G +GGW F + NNLE++DVCVF+ + N + + I+RVV EI P
Sbjct: 43 ERMKIPSSFNQCLQNQPTGMVSLVDRSGNKWSAELTSDSEGFFFVHGWKEFVRDNSIQCGQFLVFTYDKRSQFSVTVFEPSGI-DKISTF---------SAHPSKNVIIKTESDEGGMVTAAITTEKMAPALKENNGITGKRTRDVDYLMEDRVVVFKKSSEANVCESSRRKRAGASAGKSKVTSTSHNSTRGSSCSSDEDNSSSK----------SPNPPFLMRFLSGEVSRRGRCVSKGQRQLTVISQRRPVTEAEKDHALQRAREFKSKNPFAVQIMMESYVYVGFFMNIPCEFVRECLPHTNKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDN----IKVHIYRVVPEITP 398
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: Y1235_ORYSJ (B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0723500 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.761e-24 Identity = 106/406 (26.11%), Postives = 167/406 (41.13%), Query Frame = 1 Query: 73 HFVQFLRTGYDQHLALPKTFSDNLK----------KKPPANVALKGPSGVTWNVAMVTRGDTLYLACGWEQFVKDHCLKENDFLVFKYNGESQFDVLVFDGGSLCEK-----ACSYFVRKCGHKEAEHVGGSLNKKRDTTEDPMKEGHIPLKAGVECASPGKSVHANGTKEPINVPFETPTPSEEAFNADVESAGAEQVTSVGVPLSAVPSETANGKRIRKLASVVKHVQTKRRGRGRPAKVSHVVDRALDWVSGLEAAEPVSAVRSAAQEVYISNRRPVTDDEIKNALALAQASRTDDSLVVV-MRPSHVYKRFFVSMPNKWIGEHIAPMSQDVILRTEKGE-WVARYSYHNIRHTGGLTGGWKHFVLDNNLEEYDVCVFKPAGQMNESLVLGMTIFRVVEEIVP 1239
HF + L + Q L +P F ++ K+ L+GPSG TW V + + + GW +FV+D L+E +F+VF+Y+G ++F +VFD + CE+ + S + R + KE + +A P + V ++ T EP + + ++E +P+ +P+ +A+ R ++ RRG + + D AL A+ P S R Y+S RR V E + A +A A R+ V+ M HVY F + P + +H+ DV+LR G+ W Y N R L+ GW F N LEE D CVF ++ + + IFRVVE VP
Sbjct: 20 HFFKVLVGDFKQRLKIPPNFCKHIPWEESRKAKGLKEASMAATLEGPSGRTWLVVIRRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDGNTRFTAMVFD-RTACEREDLMGGGGGDRPRKKRGRPRTAAASRDAARPKKDSVGKE-MVTYRASPSGGQPLQIVDSSWTPEPGSTAVKNEEDADE------------------LPVCELPASSASPPRHVPEGALDADGGAARRGAAKTRSLQD--DLAL-------ASIPPSIRRYKG---YVSRRRAVATAERQRATEIAHAFRSPLPYCVIRMSTMHVYYSFMMRFPTGFSRQHLPRERTDVVLRDPGGKVWSVLY-IPNTRDR--LSRGWCAFARGNCLEEGDYCVF----ELVAAAEFRVHIFRVVEPAVP 386
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: Y3221_ORYSJ (B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0622100 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.210e-23 Identity = 61/172 (35.47%), Postives = 92/172 (53.49%), Query Frame = 1 Query: 10 QNCNGCRSWEEDIYWSHF--QFQHFVQFLRTGYDQHLALPKTFSDNLKKKPPANVALKGPSGVTWNVAMVTRGDT--LYLACGWEQFVKDHCLKENDFLVFKYNGESQFDVLVFDGGSLCEKACSYFVRKCGHKEAEHVGGSLNKKRDTTEDPMKEGHI---PLKAGVECAS 504
+NC+ C+ W+E YWSH +HF+ ++ + + + +P F++N V LK PSG TW++ V DT L L GW++FV + ++END L+F+Y+G S FDVL+FD S CEKA +FV G E G+ RD ++ + + P K C S
Sbjct: 8 KNCSVCKEWQEHCYWSHMADDCKHFLTYMVGDFTESMIVPSRFANNFNGHISEVVNLKSPSGKTWSIG-VAYSDTGELVLRSGWKEFVDANGVQENDCLLFRYSGVSSFDVLIFD-PSGCEKASPHFVENRGFGREEKSAGAEGGGRDGDKNGHHQHQLEMTPHKNSSRCRS 177
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: Y3222_ORYSJ (B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0622200 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 6.376e-22 Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = 1 Query: 10 QNCNGCRSWEEDIYWSHF--QFQHFVQFLRTGYDQHLALPKTFSDNLKKKPPANVALKGPSGVTWNVAMV-TRGDTLYLACGWEQFVKDHCLKENDFLVFKYNG-ESQFDVLVFDGGSLCEKACSYFVRKCGHKEAEHVGGSLNKKRDTTEDP 456
+NC+ C+ W+E YWSH +HF++ + + + + +P F++N V L+ PSG TW++ + + L L GW++FV + ++E D L+F+Y+G S FDVL+FD S CEKA +FV G AE+ G+ R+ P
Sbjct: 8 KNCSVCKEWQEHCYWSHMADHSKHFLKHMVGDFTESMTVPARFANNFNGHISEEVNLRSPSGETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGDCLLFRYSGVSSSFDVLIFD-PSGCEKASPHFVGSHGFGRAENSAGAEQGGRNGRRTP 159
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.178e-20 Identity = 92/403 (22.83%), Postives = 157/403 (38.96%), Query Frame = 1 Query: 67 FQHFVQFLRTGYDQHLALPKTFSDNLKKKPPANVALKGPSGVTWNVAMVTRGDTLYLACGWEQFVKDHCLKENDFLVFKYNGESQFDVLVFD---------GGSLCEKACSYFVRKCGHKEAEHVGGSLNKKRDTTEDPMKEGHIPLKAGVECASPGKSVHANGTKEPINVPFETPTPSEEAFNADVESAGAEQVTSVGVPLSAVPSETANGKRIRKLASVVKHVQTKRRGRGR----PAKVSHVVDRALDWVSGLEAAEPVSAVRSAAQEVYISNRRPVTDDEIKNALALAQASR-TDDSLVVVMRPSHVYKRFFVSMPNKWIGEHIAPMSQDVILRTEKGEWVARYSYHNIRHTGGLTGGWKHFVLDNNLEEYDVCVFKPAGQMNESLVLGMTIFRVVEEI 1233
F H + F T ++ L +P F K + VAL P G W V + + ++ GW++FV + ++ L+F+Y G S F V +F+ L + A ++F R ++ E + P+ E +P G ++ I F P +EE P +P K+RGR + P +++ R D RS E + +R VT +E + A+ A+ T+ VV+RPS++Y+ + +P+ + ++++ +S + ++ + +W R Y R + GW F L+NNL E DVCVF+ VL +T FRV E +
Sbjct: 5 FFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSA-------------IQTLFTGPVKAEEP-----------------TPTPKIP---------------------KKRGRKKKNADPEEINSSAPRDDD-----------PENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCLYKAGR--AKFSQGWYEFTLENNLGEGDVCVFELL--RTRDFVLKVTAFRVNEYV 341
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: Y1223_ORYSJ (B3 domain-containing protein Os12g0592300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0592300 PE=2 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.421e-19 Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 1 Query: 1 MGVQNCNGCRSWEEDIYWSHFQFQH--FVQFLRTGYDQHLALPKTFSDNLKKKPPANVALKGPSGVTWNVAMVTRGDTLYLACGWEQFVKDHCLKENDFLVF----KYNGESQFDVLVFDGGSLCEKACSYFVRK 387
MG + C CR W+E Y H F + + + +++P+ +D + LK PSG TW V++ D L L GWE F K H L+END L F + NG FDVL+FD S CEK +F+ K
Sbjct: 1 MGEKGCESCREWQEHCYREHMDVSRIRFFRLMTGDFAHGISIPEKVADRFSGQITKGFNLKAPSGETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFD-ASGCEKVSCFFIGK 134
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: Y3622_ARATH (B3 domain-containing protein At3g06220 OS=Arabidopsis thaliana OX=3702 GN=At3g06220 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 6.861e-15 Identity = 41/132 (31.06%), Postives = 68/132 (51.52%), Query Frame = 1 Query: 70 QHFVQFLRTGYDQHLALPKTFSDNLKKKPPANVALKGPSGVTWNVAMVTRGDTLYLACGWEQFVKDHCLKENDFLVFKYNGESQFDVLVFDGGSLCEKACSYFVRKCGHKEAEHVGGSLNKKRDTTEDPMKE 465
+ + FL L +P+++ ++L ++ P L G G W VAM+++ + +YLA GWE FV D+ LK+ +FL F ++G ++V ++ GS E V + E+E SL D T P +E
Sbjct: 9 RFYTVFLSCVSSNSLLIPRSYYEHLPRRLPKTAILTGTGGRVWKVAMMSKREQVYLARGWENFVADNELKDGEFLTFVFDGYKSYEVSIYGRGSCKETRAVVHVEEIS-DESESDNDSLGSLVDVTPMPAEE 139
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: Y3440_ARATH (B3 domain-containing protein At4g34400 OS=Arabidopsis thaliana OX=3702 GN=At4g34400 PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 2.164e-13 Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 1 Query: 70 QHFVQFLRTGYDQHLALPKTFSDNLKKKPPANVALKGPSGVTWNVAMVTRGDTLYLACGWEQFVKDHCLKENDFLVFKYNGESQFDVLVFDGGSLCEK 363
+ F F+ + + +P ++ D++ + P V L+GP G +W VA + D + + GW +FV+D+ L + DFL F YNG F+V +F G C++
Sbjct: 15 RFFTVFVSHFSSEFMVIPVSYYDHIPHRFPKTVILRGPGGCSWKVATEIKDDEVLFSQGWPKFVRDNTLNDGDFLTFAYNGAHIFEVSIFRGYDACKE 112
BLAST of Vigun08g019900.1 vs. DB:Swiss
Match: Y1209_ORYSJ (B3 domain-containing protein LOC_Os12g40090 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0591500 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 6.215e-13 Identity = 54/168 (32.14%), Postives = 72/168 (42.86%), Query Frame = 1 Query: 76 FVQFLRTGYDQHLALPKTFSDNLKKKPPANVALKGPSGVTWNVAMVTRGDTLYLACGWEQFVKDHCLKENDFLVFKYNGESQ----FDVLVFDGGSLCEKACSYFVRKCGH---KEAEHVGGS-----LNKKRDTTEDPMKEGHIPLKAGVECASPGKSVHANGTKEP 543
F + + + +++P+ ++ + LK PSG TW V + D L L GWE F K H L+END L F NG FDVL+FD S CEK +F K K +GG L+ + T P P KA GK+ N KEP
Sbjct: 8 FFRLMTGDFAHGISIPEKVAEIFSGQITKGFNLKSPSGETWRVGVAKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSFDVLIFD-ASGCEKVSCFFTGKKNSYMCKNFNSIGGQVAGQYLSSDSEDTSTPSVLIGSPHKASTSKKLSGKT-KTNPRKEP 173 The following BLAST results are available for this feature:
BLAST of Vigun08g019900.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g019900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g019900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g019900.1; organism=Vigna unguiculata; type=mRNA; length=1885bpback to top protein sequence of Vigun08g019900.1_Vu_IT97K-499-35_v1.1 >Vigun08g019900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g019900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g019900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=437bpback to top mRNA from alignment at Vu08:1719744..1722924- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g019900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g019900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g019900.1; organism=Vigna unguiculata; type=mRNA; length=3181bp; location=Sequence derived from: Vu08:1719744..1722924- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:1719744..1722924- >Vigun08g019900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g019900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g019900.1; organism=Vigna unguiculata; type=CDS; length=1311bp; location=Sequence derived from: Vu08:1719744..1722924- (Vigna unguiculataback to top |