|
|
Transcript Overview
| Name | Vigun08g034300.1 |
|---|
| Unique Name | Vigun08g034300.1_Vu_IT97K-499-35_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna unguiculata (cowpea) |
|---|
| Sequence length | 1134 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g034300.1_Vu_IT97K-499-35_v1.1 | Vigun08g034300.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
| Vigun08g034300.1 | Vigun08g034300.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g034300.1.v1.1.CDS.3 | Vigun08g034300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g034300.1.v1.1.CDS.2 | Vigun08g034300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun08g034300.1.v1.1.CDS.1 | Vigun08g034300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g034300.1.v1.1.three_prime_UTR.1 | Vigun08g034300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g034300.1.v1.1.five_prime_UTR.1 | Vigun08g034300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g034300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g034300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g034300.1; organism=Vigna unguiculata; type=mRNA; length=1134bp
AAAAGATGAAAACAAAGTGATGTAAGTTTAATTACGGGCTCGAAGATGGG
CCTTGCAACAAGTAAGTTGGGCCAGGCCCAAACCTCTCCGAACGCAAAAC
CCTAGAGAAACACGAAAGGTTAATGAATAATTGCACTAGAAACTGGATTG
GGTTGTTGCAGCTGAAGCAGAGAAGCATGGCGATTTTGCCTTCGCTTGCA
GTTCCATCAACTCCCATGTTTCGGGTAAAGCTGTTTCAATGCCAACCCTG
CCATTTCCACAGATGCTCAGAAATATACTTTCCCCGTCTAAGAAGTTATA
ATCGAACTAGATCATTCAAAGAATCAATGGCAGAGCATAATGAACCCAAT
GAGGTTAAGATGAAGATTGGAATCATGAGGGAGAAACTGAAAGGAACAAT
ACCAGTCTTTGTTCAAGAATTTCCTTGGAAAAAGGCTGAGCATATATTTC
TAGATAAACTGCTTAATCTCTCACAAGAGGCAGTGAAGTGGTCTCTTGTT
TTGTTTTTCATTTATAGCTTTGTATCAGACGTTGTATATACGTTGTCCAT
AAACCGTGAACTGATAATTCCTGTTGGCCTCTTTGCTGGCTGTCTTGTGG
CTGATTTCTTGAAGGAGATATCACAAGAATTGTTTCATAGATGTGAGGAG
AAGGTTTTGAAATGGCGTCTTCTGGGAATGTACTTCATCTTTGTGTTTGT
CAAGATCATGTCCTCATGGTTTGCAACAGTGCCTCGTGTATTTCTATTGC
ATGTCGCAAGTGGGGGACTGATGCAGGTTTTGTGGCATTGGAGAAATTTG
ATTGAAGATGCAAAGAACCAACAAGAAACGAGTAACTTCTCTAATTTGGA
GACTTCGTGATAGATGATGGATGGAAAAGTTAACTGCCACATCTGCAGAT
TTCCTTTTCTACGTGATAACTCCAGTTTTTGGTTTCTGCTGTTCTTCATG
AATATAATTCAAGTAATGCAATGCAACCAGCAGAGGAGCAAGTTATACTT
GTGCATCACCATTTATAGATGTTTTTATTTACTTTTAAATTAATAAAAAA
TCTATCAATAAAATAGGCGCACAAATTTCACTGAGACTAATTCTAATTTA
ATTTGGAAGCTCCTTTTCTTAATGCAAATTAAAT back to topprotein sequence of Vigun08g034300.1_Vu_IT97K-499-35_v1.1 >Vigun08g034300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g034300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g034300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=246bp
MNNCTRNWIGLLQLKQRSMAILPSLAVPSTPMFRVKLFQCQPCHFHRCSE
IYFPRLRSYNRTRSFKESMAEHNEPNEVKMKIGIMREKLKGTIPVFVQEF
PWKKAEHIFLDKLLNLSQEAVKWSLVLFFIYSFVSDVVYTLSINRELIIP
VGLFAGCLVADFLKEISQELFHRCEEKVLKWRLLGMYFIFVFVKIMSSWF
ATVPRVFLLHVASGGLMQVLWHWRNLIEDAKNQQETSNFSNLETS* back to topmRNA from alignment at Vu08:3200403..3202418- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g034300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g034300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g034300.1; organism=Vigna unguiculata; type=mRNA; length=2016bp; location=Sequence derived from: Vu08:3200403..3202418- (Vigna unguiculata
AAAAGATGAAAACAAAGTGATGTAAGTTTAATTACGGGCTCGAAGATGGG
CCTTGCAACAAGTAAGTTGGGCCAGGCCCAAACCTCTCCGAACGCAAAAC
CCTAGAGAAACACGAAAGGTTAATGAATAATTGCACTAGAAACTGGATTG
GGTTGTTGCAGCTGAAGCAGAGAAGCATGGCGATTTTGCCTTCGCTTGCA
GTTCCATCAACTCCCATGTTTCGGGTATGCTTTTATTACATTCCTTGATT
TCAACTAAAACATCGTCTCACGGGTAAATTACATTAAATGATGTCTTATA
TATGAATCAATATTCAGTTTCCTTTTTATTCTTAATTCGATCGAAATGAT
CCACACGTTTGTACTGAAGTCACCTTTAGTTTGTTGCATTGTGATGTTCT
TTGTGTATGAGGAAATTTGTGTGCTATCTATTTGAATGCGATTAAACAGG
AAATGATGTTTTTGGCACTGTGTTTTAGGACTACTATTATAGAAAGAGCA
ATTAGGACAAAGATTTTCTATGACTGAAATTTTTTTGATACTAGGGAGAT
ACCTGAGTTTTTTTCTTGGTAAATGATTGGTTTCAGAGGAAGAGTGTCAA
CATAAAACGGTTCAGAAGAGAAAGAAATAGTGAAAGACCAATTAAGTTGA
GAAACTACATAGGGGTGAGAAACTTTTAAGATTTGGCTTAAGGTGAACAA
TGGGTCCTGCTTTGATATGATGAGTAAACTTAACTGAAACGTGATGGATG
GAATTTGTTAAGCGTTTAATTTTGATACATTCGCAGTGCAAAGTTTTTCG
AAGAAGGTTACTCAATATTTTGTCTAAATTGGTTCTTATTAGTGTAAAAA
TGTTTGCTCTATATTTGTCACGATTCATGAGTAGCCTTCCAATTTTATAT
GGGGGGATTCCATTACAGTGAAGTTGCAGTCATTAAAATTTATGAAGTAT
GATATATAACGTAAGTGGCTGAAAGTTTCATTCATTTGTAGTAATTAGTT
TCCCTTCTTTTGTGTAGGTAAAGCTGTTTCAATGCCAACCCTGCCATTTC
CACAGATGCTCAGAAATATACTTTCCCCGTCTAAGAAGTTATAATCGAAC
TAGATCATTCAAAGAATCAATGGCAGAGCATAATGAACCCAATGAGGTTA
AGATGAAGATTGGAATCATGAGGGAGAAACTGAAAGGAACAATACCAGTC
TTTGTTCAAGAATTTCCTTGGAAAAAGGCTGAGCATATATTTCTAGATAA
ACTGCTTAATCTCTCACAAGAGGCAGTGAAGTGGTCTCTTGTTTTGTTTT
TCATTTATAGCTTTGTATCAGACGTTGTATATACGTTGTCCATAAACCGT
GAACTGATAATTCCTGTTGGCCTCTTTGCTGGCTGTCTTGTGGCTGATTT
CTTGAAGGAGATATCACAAGAATTGTTTCATAGATGTGAGGTATTATATT
TTGAATTTGTTGTGTATTTCATCATCAGCTCTGTGCTCAGTTGTTTTTCT
ACTTTTTCTCATGGATTTGTACTTGACAGGAGAAGGTTTTGAAATGGCGT
CTTCTGGGAATGTACTTCATCTTTGTGTTTGTCAAGATCATGTCCTCATG
GTTTGCAACAGTGCCTCGTGTATTTCTATTGCATGTCGCAAGTGGGGGAC
TGATGCAGGTTTTGTGGCATTGGAGAAATTTGATTGAAGATGCAAAGAAC
CAACAAGAAACGAGTAACTTCTCTAATTTGGAGACTTCGTGATAGATGAT
GGATGGAAAAGTTAACTGCCACATCTGCAGATTTCCTTTTCTACGTGATA
ACTCCAGTTTTTGGTTTCTGCTGTTCTTCATGAATATAATTCAAGTAATG
CAATGCAACCAGCAGAGGAGCAAGTTATACTTGTGCATCACCATTTATAG
ATGTTTTTATTTACTTTTAAATTAATAAAAAATCTATCAATAAAATAGGC
GCACAAATTTCACTGAGACTAATTCTAATTTAATTTGGAAGCTCCTTTTC
TTAATGCAAATTAAAT back to topCoding sequence (CDS) from alignment at Vu08:3200403..3202418- >Vigun08g034300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g034300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g034300.1; organism=Vigna unguiculata; type=CDS; length=738bp; location=Sequence derived from: Vu08:3200403..3202418- (Vigna unguiculata
ATGAATAATTGCACTAGAAACTGGATTGGGTTGTTGCAGCTGAAGCAGAG
AAGCATGGCGATTTTGCCTTCGCTTGCAGTTCCATCAACTCCCATGTTTC
GGGTAAAGCTGTTTCAATGCCAACCCTGCCATTTCCACAGATGCTCAGAA
ATATACTTTCCCCGTCTAAGAAGTTATAATCGAACTAGATCATTCAAAGA
ATCAATGGCAGAGCATAATGAACCCAATGAGGTTAAGATGAAGATTGGAA
TCATGAGGGAGAAACTGAAAGGAACAATACCAGTCTTTGTTCAAGAATTT
CCTTGGAAAAAGGCTGAGCATATATTTCTAGATAAACTGCTTAATCTCTC
ACAAGAGGCAGTGAAGTGGTCTCTTGTTTTGTTTTTCATTTATAGCTTTG
TATCAGACGTTGTATATACGTTGTCCATAAACCGTGAACTGATAATTCCT
GTTGGCCTCTTTGCTGGCTGTCTTGTGGCTGATTTCTTGAAGGAGATATC
ACAAGAATTGTTTCATAGATGTGAGGAGAAGGTTTTGAAATGGCGTCTTC
TGGGAATGTACTTCATCTTTGTGTTTGTCAAGATCATGTCCTCATGGTTT
GCAACAGTGCCTCGTGTATTTCTATTGCATGTCGCAAGTGGGGGACTGAT
GCAGGTTTTGTGGCATTGGAGAAATTTGATTGAAGATGCAAAGAACCAAC
AAGAAACGAGTAACTTCTCTAATTTGGAGACTTCGTGA back to top
|
