Transcript Overview
Name Vigun08g039800.1 Unique Name Vigun08g039800.1_Vu_IT97K-499-35_v1.1 Type mRNA Organism Vigna unguiculata (cowpea) Sequence length 1622
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun08g039800.1 Vigun08g039800.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun08g039800.1_Vu_IT97K-499-35_v1.1 Vigun08g039800.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun08g039800.1.v1.1.CDS.9 Vigun08g039800.1.v1.1.CDS.9_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun08g039800.1.v1.1.CDS.8 Vigun08g039800.1.v1.1.CDS.8_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun08g039800.1.v1.1.CDS.7 Vigun08g039800.1.v1.1.CDS.7_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun08g039800.1.v1.1.CDS.6 Vigun08g039800.1.v1.1.CDS.6_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun08g039800.1.v1.1.CDS.5 Vigun08g039800.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun08g039800.1.v1.1.CDS.4 Vigun08g039800.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun08g039800.1.v1.1.CDS.3 Vigun08g039800.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun08g039800.1.v1.1.CDS.2 Vigun08g039800.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS Vigun08g039800.1.v1.1.CDS.1 Vigun08g039800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun08g039800.1.v1.1.three_prime_UTR.1 Vigun08g039800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun08g039800.1.v1.1.five_prime_UTR.1 Vigun08g039800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
Homology
BLAST of Vigun08g039800.1 vs. DB:Swiss
Match:
NIPA9_ARATH (Probable magnesium transporter NIPA9 OS=Arabidopsis thaliana OX=3702 GN=At5g11960 PE=2 SV=1)
HSP 1 Score: 434.491 bits (1116), Expect = 3.115e-152
Identity = 247/343 (72.01%), Postives = 298/343 (86.88%), Query Frame = 1
Query: 1 MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYASNRTWVIGFLVDIFGALLMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAXXXXXXXXXXXEKHEVVALSIFRIPXXXXXXXXXXXXXNGWVRICKSQRREQEMMEYDVVEEIIYGLESGILFGMSSVISKMGFLFLDQGFPKLLAPLCILISVCCSGTGFYYQTRGLKHGRAIVVSTCAAVASILTGVLAGMFALGERLPSEPKARXXXXXXXXXXXXXXXXXXXSTRLVRFLSCS-SRQRRSNVDKNFGLRRTTSSRVREPSPSAIIQAATLNHLLSSSSKEK 1026
MWESI LT+AATAGNNIGK+LQKKGTIILPPLS KLKV+R+YA N+ W +GFL+DI GALLMLRALSLAPVSV+QPVSGCGLAILS+FSHFYLKEVMN DW+GIT+AG GTIGVGAGGE+ E +S+F++ LA VV ILF+LLN W+ I K QRREQE+ EY+VVEEIIYGLESGILFGM+SV+SKMGF+F++QGF + P+CI IS+CCSGTGF+YQTRGLKHGRAIVVSTCAAVASI+TGV+AGMFALGE+LP+ P RL LLLGWLLI++GV+LLV S+RL+R L S R R++++++ F +RRTTS ++ +PSA+IQAATL+HLLSS SK+K
Sbjct: 1 MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGALLMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGEEQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGILFGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMFALGEKLPTSPSGRLLLLLGWLLIMLGVVLLVTSSRLIRHLPRSFRRSRQTSLERGFNIRRTTSHTPKDTNPSAVIQAATLHHLLSSPSKDK 343
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
200 400 600 800 1000 1200 1400 1600 Expect = 7.2E-7 / Score = 28.6 Score = Score = Sequence PF05653 SSF103481 SSF103481
IPR Term IPR Description Source Source Term Source Description Alignment
IPR008521 Magnesium transporter NIPA PFAM PF05653 Mg_trans_NIPA coord: 11..283 None No IPR available SUPERFAMILY 103481 Multidrug resistance efflux transporter EmrE coord: 25..119 None No IPR available SUPERFAMILY 103481 Multidrug resistance efflux transporter EmrE coord: 193..285
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun08g039800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g039800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g039800.1; organism=Vigna unguiculata; type=mRNA; length=1622bp back to top protein sequence of Vigun08g039800.1_Vu_IT97K-499-35_v1.1
>Vigun08g039800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g039800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g039800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=344bp back to top mRNA from alignment at Vu08:3896278..3901244-
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g039800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g039800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g039800.1; organism=Vigna unguiculata; type=mRNA; length=4967bp; location=Sequence derived from: Vu08:3896278..3901244- (Vigna unguiculataAAATAATATTAACAAGAAATAGTGTAATTGGTAGCTTAGGTTACAGAACA
AATTGAAACTTGAAGTGGATAGTAACAGTCCAACAGATCGCGAAGGAGTT
AGCAACAGTGCAACAAAGAGGAAGGAAAGTTGAAAGATTTTTACACAGTG
GC ATGTGGGAATCTATTCTATTGACGGTGGCTGCCACCGCCGGCAACAAC
ATTGGAAAGATCCTTCAGAAGAAGGGCACTATCATTCTTCCTCCTCTTTC
TTTCAAACTCAAG GCATGTCTAAAGTTCCATTTTTTGTGTGTTTTAAATT
GGTATGATTTGGTTTCTCTAAAAGATCTCACCTTTTTTTGAATAAATTGC
CATTTGAAGCATGTGGGTGTCTTTGAATTTTTGAAATTGTTGTTAGTTTC
TATTGCTGCGTTTATTTGCTGTCGGTGTAAAATTTAACATTTTCCATCAA
TGTGTATGATTGAATGGTAATGGATGGATACCAAGATTACCTTCTTTGTC
CTTTTTTCATTTAAGATTATGTGGGCTTGTGGTGAACGTTTGGTTATTGG
TTCCTTTGTGTTTGCAGGTCATAAGGTCTTATGCTTCAAACAGAACCTGG
GTGATAGGTTTTCTAGTGGATATATTTGGGGCATTATTGATGTTAAGGGC
ATTGTCTTTGGCTCCA GTAAGTGGTGAAGGAAAAAAATTGACACTCAATT
TGAAGGGCTTTTTGTAATCCTCTCATCTAGTGTTTTGCTTAGGTTTTTGG
CAATGTTGTGGTGATTTTCTTATGTTAAATATGTTATAGGTCTCTGTAAT
CCAACCAGTTTCTGGCTGTGGACTAGCAATTCTATCAATTTTTTCCCATT
TTTATCTCAAGGAAGTTATGAATGCTGTTGATTGGGTTGGCATTACATTG
GCAGGTTTTGGCACAATAG GTAAAGTAAGTTTATATTTACCATAGAGCAT
TTTGTTTATTGTTTACCTTAATCTGCTTCATTTGAACTCCATGAAAAGCA
AGGTTGATGGGAGGGGAAGGGGATAACTTTGCAATAAAAGGGTGGACTGA
AATCAGGAAAACAAATTATAACTTTTTTATTGTTCATTCTGTTCATTTTG
ATTGAGAGATGATTTTTTTAGCTGTTGGGGTAGTTCAGAATTCAGATCTA
CATAGAATAAAGTGTTTGCTGTACGATTTATTTGTGTGAACTATTGTATT
AAACTCCTGTGTCTTGTGCACCTGAGCAATGGACTGAAAATTTCTGGAGT
TTTCCTCCTTCTTATTACATGGCTGCTCAGAAATCTAAGTTTGTGTTGCA
GGGTCATTGTGTTAATGTGTTTTTGTTTTTATGCGATACTAATTGGTTAA
ATGTTTTGCGCTTTTCTATGTTTAGGAGTTGGTGCTGGAGGTGAGAAGCA
TGAGGTGGTTGCTCTATCTATTTTTCGCATACCAGCGTTGGCATTTGTTG
TTTTCATCTTGTTT GTAGGTACCTTGTCTTATGAATCAACTTATTTTATA
GTCAAGTGCCTTTGTGATCACAGATATTTAGCATTCATATATCACTTGAT
TTTGATATAGTAACAATGTTGTGAGGAAATACTTGAAATCACTGTGAAAG
AAGCATAGTGGTATTCTAGTATTAATTGGAAGCCTATGTATGGTGTGGAT
GCCAAACATACATTTCGCCTTGAGTCTAATGTGTATAAATGCCAAGTATC
ATGCTTAATAAGACGCATATAATCCATGCATGAACTTGTATATATTTCTA
AAAATCACAATTCTTATTTGTATGAGAAAAATGTCATCTGATTACTTGAT
AAACTGTTTTTTACCACTTATTTTCACGAGATGTTATTTTCCTCTCTATC
TGGTGCATCTATGCTGAATTCTGATGCCGTCCTTAATGGATAATGTTATA
TATGTCTTTGAAGTAAAATTGCTATTTGATTGTGAGGTAATCAAATTTTC
ATAGTCATTTTCAGTAGAAGTTACTCTTTTGTTCTTGAAATCTATGCATG
TTATAGTCACCAACTTCCTTGCTAAGTCAATACAATGTGAGTGCATTTTG
CTGATATAGAATTTTTAGAAGACTATTTTTTACACTGCAATTTATTAATG
GTTTGCATATGATTTAATGATTTATCTGTATGAGATTATGAGTTCACCAA
TCACCTGTGCAATCAAGTGGTATTACTGCCTTCGAGACATTGTTTTTAAT
TTAATTGTTAGAAAAAGTTGTGCAGATACTGCTTAATGGATGGGTTCGAA
TATGCAAGAGTCAACGAAGAGAACAAGAAATG GTATTCATGATTTATCCA
TGTTGAAAAGCCTTTAGATTTACCTATTTATTTTCATCTAAAACACCAAC
GAATGGTGGTTTATGAGCCATGTTGTTTTGTGCTCTTTTATCACTTGACA
TTTTTAAGTTATACAGATGGAATATGATGTCGTTGAGGAAATCATCTATG
GCTTGGAATCTGGTATTTTGTTTGG GTACTTTTGTTTCCTTATTCACTCT
TTTTTGTGTATTCCATTCATTTTCAGATACTTCTCCCCTTTTCTTCTACA
TCAACTGCTTAAGACCAGGATGACTTCTGACAATTGAATTAACAGTTGTG
TGATGCAAACAATTAAGCGTTACATGGTTTGGAGTTTAGTATTATTATTT
TTGTGTGTCTTGGTAGTTTCATTTTTGGGATAAAAAAATGTTTTTTGGAG
AGAAAAGTGAGGAACGCAGTTAGAAGGATAATATATATGTGTTATGAAGG
GATTGATAACATCCAACACTTTTGTGCTTTGACATTTTGTTGGAGATTTT
ACATCGACTAAAGATCAGACCAAATAACAAGATATAAGTAGATGCAATTA
TCACCTTATAGGCCAATTTTGTAAGGTTAAGTTGAGCTTAAAGTATATTT
ATTAAGATGGTATTAGAGCCTATCTTAGTGAGGTTTGTGCGGCTTATCGT
ACCACCTGCTATCGAGTCATCATCAAACCACCCATTAATATTTAATCTCA
TGCTTGAGATGTCTAGTCTTTGGCGTTAGCGGGTGTGTTAGAAATCCCAT
ATCAACTAGAGATGAGGCCAAGTGACAATATATAAGAAAGATGAGTTTGG
TTTAAAATCTATTTCCTATTAAGTTCCACATCTTATTTTGAACTAAACCT
AACTTTTTATCGTTAAAAACTTGAAATTATGGCTAAACTCAAGCTTAATT
AGAAATTTAGATTTATTGAACACTATTGCTATTTGCATGACAGATAACAG
AACATTTACATAACTCTTACATTTGTTTACACCTAAATGCAGGATGTCAT
CTGTAATATCAAAGATGGGATTTCTATTCCTTGATCAAGGTTTTCCCAAG
CTGTTGGCTCCTTTGTGCATCCTGATCAGTGTCTGTTGTAGTGGCACAGG
CTTTTACTATCAG GTATTCTGAAGAGCACTTTTATATACTACTATCACAA
GAACCGTTACACCCTTGAGGCATGCCATGGAGGGAAATTAACCTGTTTCG
AACCACTGAGGAGCTTATCCAAGCCAAGTTCTACAGTGCCAATTTCAGAG
ATGATAAACTCTTTAAATAATCACTATCTTCCCTTCTCCTGCAGACACGA
GGTCTAAAGCATGGGAGGGCTATTGTAGTTTCTACATGTGCAGCTGTGGC
ATCAATTTTGACTGGTGTACTTGCTGGGATGTTTGCTTTGGGTGAGCGAC
TTCCTTCAGAACCGAAAGCTCGCCTCGCACTTCTTCTTGGATG GTAATAT
AAGATGTTATGCCTTGTGTTTTATTGGTTACTTTTTTCTTTCAGAACAAA
GGAAAAGGCAAATGAAAATGCATACCTTCCATTTTTTCTCTATACACAAT
AAATATGCATGCTAATCAAAGGAAAGAGAACTCAGGAGTACCTGAGTATT
CATGCTTTTGGAATGGTATGCAAGTTGATCTTTTAGGTTGAAAAAGTCCA
TAATATTCATGCTTTTGGAGTATTATGAGGTTCAATGACTAGATATAAGG
ACTAAGTCTCTTTAACTACAACAATGTTAGGATCCAATTGCAAGGTATAA
GTCCTGCATTGGGAGTATGGGATTCTGAGGTGGGATTTATGCCTTCCGAC
AGCTACAACTAGCTTTTGTTGTGATTCTCTAATGGTTCTTATCAATTTCC
TCCTCATTTCATAAAACAAGAATGAAACTGGGGTTCTCATCTTTGTTGAT
GTTACCAATGGATTTGAAACTATTTTAAGACTCTAATATCTAGTAATTCA
TGTTTCTCAAACAAAAATGAAAATATTCATGTTCTTATACATATGGAAAC
ACTGTGCTGCAGGCTACTTATTATTGTGGGTGTGATTTTACTTGTTGGTT
CAACACGGCTAGTGAGATTTCTTTCATGTTCTTCGAGACAAAGAAGAAGC
AATGTGGATAAGAATTTTGGCCTTAGAAGAACCACTTCTTCCCGGGTTAG
GGAACCAAGTCCAAGTGCTATCATTCAAGCAGCAACATTAAATCATTTAC
TATCATCATCTTCCAAAGAAAAAGCTTGA GATGACATGTGCTGGGTCATG
TTCCTTCATCCTTAGCAGAATGTCTGAGCATTAAGTTCCTTTCTAATCTG
ATTGACACGGGCAGGGTGTGTTGTACGAGTACAGTGGCTGCTTCATCAGA
GGATATTTTAGTGTGATCATTCATTTACGATTCCCACATTATGGATGAAA
TATGTGTTAACTTCTGAGGCCACCTTGTAGAAACTTTTCATGAACTTCCA
TTAATTTTTTTTCTTTTGTTTTCAAGGATTGTATACGACAGTGATGTGGA
TAGCATACCAAGTTGGGAGTACATAATTTGTTTTATTTGCATTGAAACAT
ATTTTGATGAAGAAAAGTTTATTCTTGTGTTTTTTGAAATTATAAAATTT
GTATCTTTATCAATAAATGTTGTAACAAAATTACATGATGTATTTTTCAA
TATATGTTTATCAATAG back to top Coding sequence (CDS) from alignment at Vu08:3896278..3901244-
>Vigun08g039800.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g039800.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g039800.1; organism=Vigna unguiculata; type=CDS; length=1032bp; location=Sequence derived from: Vu08:3896278..3901244- (Vigna unguiculata back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR008521 Mg_trans_NIPA
Vocabulary: Biological Process
Term Definition
GO:0015693 magnesium ion transport
Vocabulary: Molecular Function
Term Definition
GO:0015095 magnesium ion transmembrane transporter activity
Vocabulary: Cellular Component
Term Definition
GO:0016021 integral component of membrane
